RNA–Protein interactions for RNA: ENST00000555961.1

NEK9-208, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-208ENST00000555961 CTHP32929 405 aa4.11□□□□□ -1.75
NEK9-208ENST00000555961 PRR7Q8TB68 274 aa4.11□□□□□ -1.75
NEK9-208ENST00000555961 AK7Q96M32 723 aa4.11□□□□□ -1.75
NEK9-208ENST00000555961 ATP13A2Q9NQ11 1180 aa4.11□□□□□ -1.75
NEK9-208ENST00000555961 PCDHGC3Q9UN70 934 aa4.11□□□□□ -1.75
NEK9-208ENST00000555961 PLEKHG3A1L390 1219 aa4.1□□□□□ -1.75
NEK9-208ENST00000555961 GJA5P36382 358 aa4.1□□□□□ -1.75
NEK9-208ENST00000555961 SKOR1P84550 965 aa4.1□□□□□ -1.75
NEK9-208ENST00000555961 TBC1D2Q9BYX2 928 aa4.1□□□□□ -1.75
NEK9-208ENST00000555961 UNC93B1Q9H1C4 597 aa4.1□□□□□ -1.75
NEK9-208ENST00000555961 DACH1Q9UI36 760 aa4.1□□□□□ -1.75
NEK9-208ENST00000555961 KCNH2Q12809 1159 aa4.09□□□□□ -1.75
NEK9-208ENST00000555961 LINC01559Q495D7 138 aa4.09□□□□□ -1.75
NEK9-208ENST00000555961 DESI1Q6ICB0 168 aa4.09□□□□□ -1.75
NEK9-208ENST00000555961 TMEM151AQ8N4L1 468 aa4.09□□□□□ -1.75
NEK9-208ENST00000555961 HPS1Q92902 700 aa4.09□□□□□ -1.75
NEK9-208ENST00000555961 ZBTB3Q9H5J0 574 aa4.09□□□□□ -1.75
NEK9-208ENST00000555961 EVA1BQ9NVM1 165 aa4.09□□□□□ -1.75
NEK9-208ENST00000555961 TRIM66O15016 1216 aa4.08□□□□□ -1.76
NEK9-208ENST00000555961 CAPN5O15484 640 aaPredicted RBP4.08□□□□□ -1.76
NEK9-208ENST00000555961 VARSP26640 1264 aaKnown RBP4.08□□□□□ -1.76
NEK9-208ENST00000555961 SH3BP2P78314 561 aa4.08□□□□□ -1.76
NEK9-208ENST00000555961 KCNMA1Q12791 1236 aa4.08□□□□□ -1.76
NEK9-208ENST00000555961 PTCRAQ6ISU1 281 aaPredicted RBP4.08□□□□□ -1.76
NEK9-208ENST00000555961 RSBN1LQ6PCB5 846 aaPredicted RBP4.08□□□□□ -1.76
NEK9-208ENST00000555961 PARP9Q8IXQ6 854 aa4.08□□□□□ -1.76
NEK9-208ENST00000555961 TSC1Q92574 1164 aa4.08□□□□□ -1.76
NEK9-208ENST00000555961 TRIM47Q96LD4 638 aa4.08□□□□□ -1.76
NEK9-208ENST00000555961 NUTM2BA6NNL0 878 aaPredicted RBP4.07□□□□□ -1.76
NEK9-208ENST00000555961 NUTM2EB1AL46 878 aaPredicted RBP4.07□□□□□ -1.76
NEK9-208ENST00000555961 AGERQ15109 404 aa4.07□□□□□ -1.76
NEK9-208ENST00000555961 CSPP1Q1MSJ5 1256 aa4.07□□□□□ -1.76
NEK9-208ENST00000555961 NUTM2DQ5VT03 806 aaPredicted RBP4.07□□□□□ -1.76
NEK9-208ENST00000555961 PRPF38BQ5VTL8 546 aaKnown RBP4.07□□□□□ -1.76
NEK9-208ENST00000555961 RIC3Q7Z5B4 369 aa4.07□□□□□ -1.76
NEK9-208ENST00000555961 NUTM2AQ8IVF1 878 aaPredicted RBP4.07□□□□□ -1.76
NEK9-208ENST00000555961 ZNF511Q8NB15 262 aa4.07□□□□□ -1.76
NEK9-208ENST00000555961 FAM174AQ8TBP5 190 aa4.07□□□□□ -1.76
NEK9-208ENST00000555961 SLC16A10Q8TF71 515 aa4.07□□□□□ -1.76
NEK9-208ENST00000555961 BAP1Q92560 729 aa4.07□□□□□ -1.76
NEK9-208ENST00000555961 SPTLC1O15269 473 aa4.06□□□□□ -1.76
NEK9-208ENST00000555961 SNRPBP14678 240 aaKnown RBP4.06□□□□□ -1.76
NEK9-208ENST00000555961 SCARF1Q14162 830 aa4.06□□□□□ -1.76
NEK9-208ENST00000555961 LYPD8Q6UX82 237 aa4.06□□□□□ -1.76
NEK9-208ENST00000555961 ARMC2Q8NEN0 867 aa4.06□□□□□ -1.76
NEK9-208ENST00000555961 HELBQ8NG08 1087 aaPredicted RBP4.06□□□□□ -1.76
NEK9-208ENST00000555961 TLL2Q9Y6L7 1015 aa4.06□□□□□ -1.76
NEK9-208ENST00000555961 SIAH2O43255 324 aa4.05□□□□□ -1.76
NEK9-208ENST00000555961 HRCP23327 699 aa4.05□□□□□ -1.76
NEK9-208ENST00000555961 PDE4DQ08499 809 aa4.05□□□□□ -1.76
NEK9-208ENST00000555961 NNTQ13423 1086 aa4.05□□□□□ -1.76
NEK9-208ENST00000555961 ARID5BQ14865 1188 aa4.05□□□□□ -1.76
NEK9-208ENST00000555961 ATP1B4Q9UN42 357 aaPredicted RBP4.05□□□□□ -1.76
NEK9-208ENST00000555961 CFAP99D6REC4 459 aa4.04□□□□□ -1.76
NEK9-208ENST00000555961 TERTO14746 1132 aaKnown RBP4.04□□□□□ -1.76
NEK9-208ENST00000555961 GDF11O95390 407 aa4.04□□□□□ -1.76
NEK9-208ENST00000555961 ADH1CP00326 375 aa4.04□□□□□ -1.76
NEK9-208ENST00000555961 NBPF14Q5TI25 921 aa4.04□□□□□ -1.76
NEK9-208ENST00000555961 BPHLQ86WA6 291 aaPredicted RBP4.04□□□□□ -1.76
NEK9-208ENST00000555961 CABLES1Q8TDN4 633 aa4.04□□□□□ -1.76
NEK9-208ENST00000555961 RSPH6AQ9H0K4 717 aa4.04□□□□□ -1.76
NEK9-208ENST00000555961 PCDHB15Q9Y5E8 787 aa4.04□□□□□ -1.76
NEK9-208ENST00000555961 UPP2O95045 317 aa4.03□□□□□ -1.76
NEK9-208ENST00000555961 BMP1P13497 986 aa4.03□□□□□ -1.76
NEK9-208ENST00000555961 WDR4P57081 412 aaKnown RBP4.03□□□□□ -1.76
NEK9-208ENST00000555961 MPNDQ8N594 471 aa4.03□□□□□ -1.76
NEK9-208ENST00000555961 MAP10Q9P2G4 905 aa4.03□□□□□ -1.76
NEK9-208ENST00000555961 IGHA1P01876 353 aa4.02□□□□□ -1.77
NEK9-208ENST00000555961 CLK2P49760 499 aaKnown RBP4.02□□□□□ -1.77
NEK9-208ENST00000555961 TUSC1Q2TAM9 212 aa4.02□□□□□ -1.77
NEK9-208ENST00000555961 LCE2CQ5TA81 110 aa4.02□□□□□ -1.77
NEK9-208ENST00000555961 MYSM1Q5VVJ2 828 aa4.02□□□□□ -1.77
NEK9-208ENST00000555961 Q8N3U1 123 aa4.02□□□□□ -1.77
NEK9-208ENST00000555961 SLC24A3Q9HC58 644 aa4.02□□□□□ -1.77
NEK9-208ENST00000555961 F12P00748 615 aaPredicted RBP4.01□□□□□ -1.77
NEK9-208ENST00000555961 NR5A1Q13285 461 aa4.01□□□□□ -1.77
NEK9-208ENST00000555961 MRPL14Q6P1L8 145 aaKnown RBP4.01□□□□□ -1.77
NEK9-208ENST00000555961 TRIM46Q7Z4K8 759 aa4.01□□□□□ -1.77
NEK9-208ENST00000555961 NPAS3Q8IXF0 933 aa4.01□□□□□ -1.77
NEK9-208ENST00000555961 FOXJ1Q92949 421 aa4.01□□□□□ -1.77
NEK9-208ENST00000555961 IRF7Q92985 503 aa4.01□□□□□ -1.77
NEK9-208ENST00000555961 NXF1Q9UBU9 619 aaKnown RBP4.01□□□□□ -1.77
NEK9-208ENST00000555961 LIMD1Q9UGP4 676 aa4.01□□□□□ -1.77
NEK9-208ENST00000555961 LILRB3O75022 631 aa4□□□□□ -1.77
NEK9-208ENST00000555961 ZIC2O95409 532 aaPredicted RBP4□□□□□ -1.77
NEK9-208ENST00000555961 TIMP2P16035 220 aa4□□□□□ -1.77
NEK9-208ENST00000555961 GPAT2Q6NUI2 795 aa4□□□□□ -1.77
NEK9-208ENST00000555961 VASH1Q7L8A9 365 aaPredicted RBP4□□□□□ -1.77
NEK9-208ENST00000555961 PNMA1Q8ND90 353 aa4□□□□□ -1.77
NEK9-208ENST00000555961 GPKOWQ92917 476 aaPredicted RBP eCLIP4□□□□□ -1.77
NEK9-208ENST00000555961 ZFP42Q96MM3 310 aa4□□□□□ -1.77
NEK9-208ENST00000555961 CDK15Q96Q40 435 aa4□□□□□ -1.77
NEK9-208ENST00000555961 POLR3EQ9NVU0 708 aa4□□□□□ -1.77
NEK9-208ENST00000555961 MAGEB6P1A0A0J9YX57 407 aa3.99□□□□□ -1.77
NEK9-208ENST00000555961 PER1O15534 1290 aaPredicted RBP3.99□□□□□ -1.77
NEK9-208ENST00000555961 MAN1A2O60476 641 aa3.99□□□□□ -1.77
NEK9-208ENST00000555961 FSHRP23945 695 aa3.99□□□□□ -1.77
NEK9-208ENST00000555961 QPCTQ16769 361 aa3.99□□□□□ -1.77
NEK9-208ENST00000555961 PURBQ96QR8 312 aaKnown RBP3.99□□□□□ -1.77
NEK9-208ENST00000555961 BMP2P12643 396 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms