RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 KRI1Q8N9T8 703 aaKnown RBP13□□□□□ -0.33
VRK1-203ENST00000555067 PRR7Q8TB68 274 aa13□□□□□ -0.33
VRK1-203ENST00000555067 TIMP2P16035 220 aa12.99□□□□□ -0.33
VRK1-203ENST00000555067 KLF16Q9BXK1 252 aaPredicted RBP12.99□□□□□ -0.33
VRK1-203ENST00000555067 SPDYE5A6NIY4 337 aa12.97□□□□□ -0.33
VRK1-203ENST00000555067 VSIG8P0DPA2 414 aa12.97□□□□□ -0.33
VRK1-203ENST00000555067 ADH1CP00326 375 aa12.96□□□□□ -0.33
VRK1-203ENST00000555067 MTMR2Q13614 643 aa12.96□□□□□ -0.33
VRK1-203ENST00000555067 WDR4P57081 412 aaKnown RBP12.94□□□□□ -0.34
VRK1-203ENST00000555067 SCARF1Q14162 830 aa12.94□□□□□ -0.34
VRK1-203ENST00000555067 PURBQ96QR8 312 aaKnown RBP12.94□□□□□ -0.34
VRK1-203ENST00000555067 BARGINQ6ZT62 677 aa12.92□□□□□ -0.34
VRK1-203ENST00000555067 CDK15Q96Q40 435 aa12.92□□□□□ -0.34
VRK1-203ENST00000555067 ZMYND10O75800 440 aa12.91□□□□□ -0.34
VRK1-203ENST00000555067 GJA5P36382 358 aa12.91□□□□□ -0.34
VRK1-203ENST00000555067 LYPD8Q6UX82 237 aa12.91□□□□□ -0.34
VRK1-203ENST00000555067 LOC100996750A0A140TA64 210 aa12.9□□□□□ -0.34
VRK1-203ENST00000555067 SOBPA7XYQ1 873 aa12.9□□□□□ -0.34
VRK1-203ENST00000555067 AMHR2Q16671 573 aa12.9□□□□□ -0.34
VRK1-203ENST00000555067 FAM174AQ8TBP5 190 aa12.9□□□□□ -0.34
VRK1-203ENST00000555067 ZC3H15Q8WU90 426 aaKnown RBP12.9□□□□□ -0.34
VRK1-203ENST00000555067 KRTAP4-6Q9BYQ5 205 aa12.9□□□□□ -0.34
VRK1-203ENST00000555067 F12P00748 615 aaPredicted RBP12.87□□□□□ -0.35
VRK1-203ENST00000555067 FOXJ1Q92949 421 aa12.86□□□□□ -0.35
VRK1-203ENST00000555067 GIGYF2Q6Y7W6 1299 aaKnown RBP12.85□□□□□ -0.35
VRK1-203ENST00000555067 ZIC2O95409 532 aaPredicted RBP12.84□□□□□ -0.35
VRK1-203ENST00000555067 CTHP32929 405 aa12.84□□□□□ -0.35
VRK1-203ENST00000555067 TTLL12Q14166 644 aaPredicted RBP12.84□□□□□ -0.35
VRK1-203ENST00000555067 RSBN1LQ6PCB5 846 aaPredicted RBP12.84□□□□□ -0.35
VRK1-203ENST00000555067 ZFAND3Q9H8U3 227 aa12.84□□□□□ -0.35
VRK1-203ENST00000555067 CFAP99D6REC4 459 aa12.83□□□□□ -0.36
VRK1-203ENST00000555067 ITPKCQ96DU7 683 aa12.83□□□□□ -0.36
VRK1-203ENST00000555067 BEGAINQ9BUH8 593 aa12.83□□□□□ -0.36
VRK1-203ENST00000555067 NR3C2P08235 984 aa12.82□□□□□ -0.36
VRK1-203ENST00000555067 NR5A1Q13285 461 aa12.82□□□□□ -0.36
VRK1-203ENST00000555067 C4orf48Q5BLP8 95 aa12.82□□□□□ -0.36
VRK1-203ENST00000555067 TBC1D2Q9BYX2 928 aa12.82□□□□□ -0.36
VRK1-203ENST00000555067 MAP10Q9P2G4 905 aa12.82□□□□□ -0.36
VRK1-203ENST00000555067 PCDHB15Q9Y5E8 787 aa12.82□□□□□ -0.36
VRK1-203ENST00000555067 GRM5P41594 1212 aa12.81□□□□□ -0.36
VRK1-203ENST00000555067 SPTLC1O15269 473 aa12.8□□□□□ -0.36
VRK1-203ENST00000555067 DIXDC1Q155Q3 683 aa12.8□□□□□ -0.36
VRK1-203ENST00000555067 PPFIA3O75145 1194 aa12.79□□□□□ -0.36
VRK1-203ENST00000555067 HRCP23327 699 aa12.79□□□□□ -0.36
VRK1-203ENST00000555067 ARID5BQ14865 1188 aa12.79□□□□□ -0.36
VRK1-203ENST00000555067 MAN1A2O60476 641 aa12.78□□□□□ -0.36
VRK1-203ENST00000555067 KCNMA1Q12791 1236 aa12.78□□□□□ -0.36
VRK1-203ENST00000555067 GSK3AP49840 483 aa12.77□□□□□ -0.37
VRK1-203ENST00000555067 C6orf118Q5T5N4 469 aa12.77□□□□□ -0.37
VRK1-203ENST00000555067 MEIOBQ8N635 442 aa12.77□□□□□ -0.37
VRK1-203ENST00000555067 ZBTB3Q9H5J0 574 aa12.77□□□□□ -0.37
VRK1-203ENST00000555067 PRPF38BQ5VTL8 546 aaKnown RBP12.76□□□□□ -0.37
VRK1-203ENST00000555067 SOS2Q07890 1332 aaPredicted RBP12.75□□□□□ -0.37
VRK1-203ENST00000555067 BPHLQ86WA6 291 aaPredicted RBP12.75□□□□□ -0.37
VRK1-203ENST00000555067 LINC00528Q8N1L1 170 aa12.75□□□□□ -0.37
VRK1-203ENST00000555067 C1QTNF2Q9BXJ5 285 aa12.74□□□□□ -0.37
VRK1-203ENST00000555067 PER1O15534 1290 aaPredicted RBP12.73□□□□□ -0.37
VRK1-203ENST00000555067 SH3RF1Q7Z6J0 888 aa12.72□□□□□ -0.37
VRK1-203ENST00000555067 PARP9Q8IXQ6 854 aa12.72□□□□□ -0.37
VRK1-203ENST00000555067 AK7Q96M32 723 aa12.72□□□□□ -0.37
VRK1-203ENST00000555067 DNMT3LQ9UJW3 386 aa12.72□□□□□ -0.37
VRK1-203ENST00000555067 BMP2P12643 396 aa12.71□□□□□ -0.37
VRK1-203ENST00000555067 MAP4K5Q9Y4K4 846 aa12.71□□□□□ -0.37
VRK1-203ENST00000555067 AGERQ15109 404 aa12.7□□□□□ -0.38
VRK1-203ENST00000555067 RIC3Q7Z5B4 369 aa12.7□□□□□ -0.38
VRK1-203ENST00000555067 CABLES1Q8TDN4 633 aa12.7□□□□□ -0.38
VRK1-203ENST00000555067 TRIM66O15016 1216 aa12.69□□□□□ -0.38
VRK1-203ENST00000555067 UPP2O95045 317 aa12.69□□□□□ -0.38
VRK1-203ENST00000555067 KRT76Q01546 638 aa12.69□□□□□ -0.38
VRK1-203ENST00000555067 SUZ12Q15022 739 aaKnown RBP12.68□□□□□ -0.38
VRK1-203ENST00000555067 TRMT44Q8IYL2 757 aaKnown RBP12.68□□□□□ -0.38
VRK1-203ENST00000555067 SH3BP5LQ7L8J4 393 aa12.66□□□□□ -0.38
VRK1-203ENST00000555067 GPR161Q8N6U8 529 aaKnown RBP12.66□□□□□ -0.38
VRK1-203ENST00000555067 FSHRP23945 695 aa12.65□□□□□ -0.38
VRK1-203ENST00000555067 TUSC1Q2TAM9 212 aa12.65□□□□□ -0.38
VRK1-203ENST00000555067 ARMC2Q8NEN0 867 aa12.65□□□□□ -0.38
VRK1-203ENST00000555067 TSEN34Q9BSV6 310 aaKnown RBP12.65□□□□□ -0.38
VRK1-203ENST00000555067 KCTD17Q8N5Z5 321 aa12.64□□□□□ -0.39
VRK1-203ENST00000555067 EMILIN1Q9Y6C2 1016 aa12.63□□□□□ -0.39
VRK1-203ENST00000555067 SLC24A1O60721 1099 aa12.62□□□□□ -0.39
VRK1-203ENST00000555067 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.62□□□□□ -0.393e-7■□□□□ 10.2
VRK1-203ENST00000555067 LIMD1Q9UGP4 676 aa12.62□□□□□ -0.39
VRK1-203ENST00000555067 QPCTQ16769 361 aa12.61□□□□□ -0.39
VRK1-203ENST00000555067 CSPP1Q1MSJ5 1256 aa12.61□□□□□ -0.39
VRK1-203ENST00000555067 NBPF14Q5TI25 921 aa12.61□□□□□ -0.39
VRK1-203ENST00000555067 VASH1Q7L8A9 365 aaPredicted RBP12.61□□□□□ -0.39
VRK1-203ENST00000555067 CCDC116Q8IYX3 515 aa12.61□□□□□ -0.39
VRK1-203ENST00000555067 NANOS1Q8WY41 292 aaKnown RBP12.61□□□□□ -0.39
VRK1-203ENST00000555067 LILRB3O75022 631 aa12.6□□□□□ -0.39
VRK1-203ENST00000555067 CNTNAP3BQ96NU0 1288 aa12.6□□□□□ -0.39
VRK1-203ENST00000555067 CNTNAP3Q9BZ76 1288 aa12.6□□□□□ -0.39
VRK1-203ENST00000555067 TTLL8A6PVC2 850 aa12.59□□□□□ -0.39
VRK1-203ENST00000555067 PTSQ03393 145 aa12.59□□□□□ -0.39
VRK1-203ENST00000555067 MYSM1Q5VVJ2 828 aa12.59□□□□□ -0.39
VRK1-203ENST00000555067 BCANQ96GW7 911 aa12.59□□□□□ -0.39
VRK1-203ENST00000555067 ADAMTS8Q9UP79 889 aa12.59□□□□□ -0.39
VRK1-203ENST00000555067 RASSF7Q02833 373 aa12.58□□□□□ -0.4
VRK1-203ENST00000555067 PDE4DQ08499 809 aa12.58□□□□□ -0.4
VRK1-203ENST00000555067 TMEM151AQ8N4L1 468 aa12.58□□□□□ -0.4
VRK1-203ENST00000555067 SLC24A3Q9HC58 644 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms