RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 DMRT2Q9Y5R5 561 aa16.87■□□□□ 0.29
VIPAS39-206ENST00000553888 PDE3BQ13370 1112 aa16.87■□□□□ 0.29
VIPAS39-206ENST00000553888 NEUROD2Q15784 382 aa16.87■□□□□ 0.29
VIPAS39-206ENST00000553888 TOPAZ1Q8N9V7 1692 aa16.87■□□□□ 0.29
VIPAS39-206ENST00000553888 ZNF521Q96K83 1311 aa16.87■□□□□ 0.29
VIPAS39-206ENST00000553888 CFAP53Q96M91 514 aa16.86■□□□□ 0.29
VIPAS39-206ENST00000553888 SPINK5Q9NQ38 1064 aaPredicted RBP16.86■□□□□ 0.29
VIPAS39-206ENST00000553888 PPM1GO15355 546 aaPredicted RBP16.86■□□□□ 0.29
VIPAS39-206ENST00000553888 ANKLE2Q86XL3 938 aa16.86■□□□□ 0.29
VIPAS39-206ENST00000553888 EDC4Q6P2E9 1401 aaKnown RBP16.85■□□□□ 0.29
VIPAS39-206ENST00000553888 PMFBP1Q8TBY8 1022 aa16.85■□□□□ 0.29
VIPAS39-206ENST00000553888 PTCH1Q13635 1447 aa16.85■□□□□ 0.29
VIPAS39-206ENST00000553888 U2AF1L5P0DN76 240 aaPredicted RBP16.85■□□□□ 0.29
VIPAS39-206ENST00000553888 U2AF1Q01081 240 aaKnown RBP eCLIP16.85■□□□□ 0.29
VIPAS39-206ENST00000553888 RCAN3Q9UKA8 241 aa16.85■□□□□ 0.29
VIPAS39-206ENST00000553888 COL3A1P02461 1466 aaPredicted RBP16.85■□□□□ 0.29
VIPAS39-206ENST00000553888 RNF123Q5XPI4 1314 aa16.85■□□□□ 0.29
VIPAS39-206ENST00000553888 ACEP12821 1306 aa16.84■□□□□ 0.29
VIPAS39-206ENST00000553888 U2SURPO15042 1029 aaKnown RBP16.84■□□□□ 0.29
VIPAS39-206ENST00000553888 CHD2O14647 1828 aaKnown RBP16.83■□□□□ 0.29
VIPAS39-206ENST00000553888 EMILIN1Q9Y6C2 1016 aa16.82■□□□□ 0.28
VIPAS39-206ENST00000553888 GOLGA2Q08379 1002 aa16.82■□□□□ 0.28
VIPAS39-206ENST00000553888 NCBP3Q53F19 620 aaKnown RBP16.82■□□□□ 0.28
VIPAS39-206ENST00000553888 DUSP27Q5VZP5 1158 aa16.82■□□□□ 0.28
VIPAS39-206ENST00000553888 POLKQ9UBT6 870 aa16.82■□□□□ 0.28
VIPAS39-206ENST00000553888 B4GALNT3Q6L9W6 998 aa16.81■□□□□ 0.28
VIPAS39-206ENST00000553888 TCP11L2Q8N4U5 519 aa16.81■□□□□ 0.28
VIPAS39-206ENST00000553888 NRKQ7Z2Y5 1582 aa16.81■□□□□ 0.28
VIPAS39-206ENST00000553888 PLIN1O60240 522 aa16.8■□□□□ 0.28
VIPAS39-206ENST00000553888 RUNDC1Q96C34 613 aa16.8■□□□□ 0.28
VIPAS39-206ENST00000553888 IQSEC2Q5JU85 1478 aa16.8■□□□□ 0.28
VIPAS39-206ENST00000553888 RRS1Q15050 365 aaKnown RBP16.8■□□□□ 0.28
VIPAS39-206ENST00000553888 NALCNQ8IZF0 1738 aa16.8■□□□□ 0.28
VIPAS39-206ENST00000553888 RRP1P56182 461 aaKnown RBP16.8■□□□□ 0.28
VIPAS39-206ENST00000553888 SLFN5Q08AF3 891 aa16.79■□□□□ 0.28
VIPAS39-206ENST00000553888 TTC21BQ7Z4L5 1316 aa16.78■□□□□ 0.28
VIPAS39-206ENST00000553888 PLEKHG3A1L390 1219 aa16.78■□□□□ 0.28
VIPAS39-206ENST00000553888 WWC1Q8IX03 1113 aa16.78■□□□□ 0.28
VIPAS39-206ENST00000553888 SOX12O15370 315 aa16.77■□□□□ 0.28
VIPAS39-206ENST00000553888 COG3Q96JB2 828 aa16.77■□□□□ 0.28
VIPAS39-206ENST00000553888 PPP4R2Q9NY27 417 aa16.77■□□□□ 0.28
VIPAS39-206ENST00000553888 ZNF692Q9BU19 519 aaPredicted RBP16.77■□□□□ 0.27
VIPAS39-206ENST00000553888 USP6P35125 1406 aa16.77■□□□□ 0.27
VIPAS39-206ENST00000553888 DIAPH1O60610 1272 aaKnown RBP16.76■□□□□ 0.27
VIPAS39-206ENST00000553888 NPHP4O75161 1426 aaPredicted RBP16.76■□□□□ 0.27
VIPAS39-206ENST00000553888 RTN4Q9NQC3 1192 aaKnown RBP16.76■□□□□ 0.27
VIPAS39-206ENST00000553888 PNPLA6Q8IY17 1366 aa16.76■□□□□ 0.27
VIPAS39-206ENST00000553888 FMN2Q9NZ56 1722 aa16.76■□□□□ 0.27
VIPAS39-206ENST00000553888 PIK3R4Q99570 1358 aa16.75■□□□□ 0.27
VIPAS39-206ENST00000553888 NGDNQ8NEJ9 315 aaKnown RBP16.74■□□□□ 0.27
VIPAS39-206ENST00000553888 PLEKHF1Q96S99 279 aa16.74■□□□□ 0.27
VIPAS39-206ENST00000553888 TRMT2AQ8IZ69 625 aaKnown RBP16.73■□□□□ 0.27
VIPAS39-206ENST00000553888 HMOX1P09601 288 aa16.73■□□□□ 0.27
VIPAS39-206ENST00000553888 EXOC6Q8TAG9 804 aa16.73■□□□□ 0.27
VIPAS39-206ENST00000553888 ERICH6BQ5W0A0 696 aa16.72■□□□□ 0.27
VIPAS39-206ENST00000553888 LRRC7Q96NW7 1537 aa16.71■□□□□ 0.27
VIPAS39-206ENST00000553888 NUTM2GQ5VZR2 741 aa16.71■□□□□ 0.27
VIPAS39-206ENST00000553888 SSH2Q76I76 1423 aa16.71■□□□□ 0.27
VIPAS39-206ENST00000553888 C20orf194Q5TEA3 1177 aa16.71■□□□□ 0.27
VIPAS39-206ENST00000553888 OVOS2A0A0J9YW53 1432 aa16.7■□□□□ 0.26
VIPAS39-206ENST00000553888 OVOS2Q6IE36 1432 aa16.7■□□□□ 0.26
VIPAS39-206ENST00000553888 E9PSI1 815 aa16.7■□□□□ 0.26
VIPAS39-206ENST00000553888 HSPA2P54652 639 aa16.7■□□□□ 0.26
VIPAS39-206ENST00000553888 PHF23Q9BUL5 403 aaPredicted RBP16.69■□□□□ 0.26
VIPAS39-206ENST00000553888 PIK3C2AO00443 1686 aa16.69■□□□□ 0.26
VIPAS39-206ENST00000553888 PEAK1Q9H792 1746 aa16.69■□□□□ 0.26
VIPAS39-206ENST00000553888 AATKQ6ZMQ8 1374 aa16.69■□□□□ 0.26
VIPAS39-206ENST00000553888 CDK12Q9NYV4 1490 aaPredicted RBP16.68■□□□□ 0.26
VIPAS39-206ENST00000553888 PRKAR2BP31323 418 aa16.68■□□□□ 0.26
VIPAS39-206ENST00000553888 IL13P35225 146 aa16.68■□□□□ 0.26
VIPAS39-206ENST00000553888 TMPOP42166 694 aaKnown RBP16.68■□□□□ 0.26
VIPAS39-206ENST00000553888 C14orf37Q86TY3 774 aa16.68■□□□□ 0.26
VIPAS39-206ENST00000553888 MAPK8IP3Q9UPT6 1336 aa16.68■□□□□ 0.26
VIPAS39-206ENST00000553888 BCAR3O75815 825 aa16.67■□□□□ 0.26
VIPAS39-206ENST00000553888 RSPH6AQ9H0K4 717 aa16.67■□□□□ 0.26
VIPAS39-206ENST00000553888 PHACTR3Q96KR7 559 aa16.67■□□□□ 0.26
VIPAS39-206ENST00000553888 TRIM35Q9UPQ4 493 aa16.67■□□□□ 0.26
VIPAS39-206ENST00000553888 TSHZ2Q9NRE2 1034 aa16.66■□□□□ 0.26
VIPAS39-206ENST00000553888 ANKARQ7Z5J8 1434 aa16.66■□□□□ 0.26
VIPAS39-206ENST00000553888 PAK3O75914 559 aaPredicted RBP16.66■□□□□ 0.26
VIPAS39-206ENST00000553888 NGEFQ8N5V2 710 aa16.66■□□□□ 0.26
VIPAS39-206ENST00000553888 CRBNQ96SW2 442 aa16.66■□□□□ 0.26
VIPAS39-206ENST00000553888 MARF1Q9Y4F3 1742 aaKnown RBP16.65■□□□□ 0.26
VIPAS39-206ENST00000553888 ADGRL3Q9HAR2 1447 aa16.65■□□□□ 0.26
VIPAS39-206ENST00000553888 RIPK4P57078 832 aa16.65■□□□□ 0.26
VIPAS39-206ENST00000553888 HSP90AB2PQ58FF8 381 aa16.65■□□□□ 0.26
VIPAS39-206ENST00000553888 KLHL34Q8N239 644 aa16.64■□□□□ 0.25
VIPAS39-206ENST00000553888 TSR2Q969E8 191 aaKnown RBP16.64■□□□□ 0.25
VIPAS39-206ENST00000553888 CCDC136Q96JN2 1154 aa16.64■□□□□ 0.25
VIPAS39-206ENST00000553888 STRCP1A6NGW2 1772 aa16.64■□□□□ 0.25
VIPAS39-206ENST00000553888 CCDC27Q2M243 656 aa16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 ESCO1Q5FWF5 840 aa16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 PHF8Q9UPP1 1060 aa16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 FCHSD2O94868 740 aa16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 NLRP6P59044 892 aa16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 EIF4A2Q14240 407 aaKnown RBP16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 AEBP1Q8IUX7 1158 aa16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 WDR63Q8IWG1 891 aa16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 TTC21AQ8NDW8 1320 aa16.63■□□□□ 0.25
VIPAS39-206ENST00000553888 DLG5Q8TDM6 1919 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms