RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 ABCA3Q99758 1704 aa18.33■□□□□ 0.52
LINC00643-202ENST00000553426 A0A0G2JS52 829 aa18.33■□□□□ 0.52
LINC00643-202ENST00000553426 SRPK2P78362 688 aaKnown RBP18.33■□□□□ 0.52
LINC00643-202ENST00000553426 MYT1Q01538 1121 aa18.33■□□□□ 0.52
LINC00643-202ENST00000553426 L3MBTL2Q969R5 705 aa18.33■□□□□ 0.52
LINC00643-202ENST00000553426 GLI3P10071 1580 aa18.33■□□□□ 0.52
LINC00643-202ENST00000553426 PLCH1Q4KWH8 1693 aa18.32■□□□□ 0.52
LINC00643-202ENST00000553426 ALS2Q96Q42 1657 aa18.32■□□□□ 0.52
LINC00643-202ENST00000553426 PRDM11Q9NQV5 511 aa18.32■□□□□ 0.52
LINC00643-202ENST00000553426 ACEP12821 1306 aa18.31■□□□□ 0.52
LINC00643-202ENST00000553426 NBPF8Q3BBV2 869 aa18.31■□□□□ 0.52
LINC00643-202ENST00000553426 PLEKHG3A1L390 1219 aa18.3■□□□□ 0.52
LINC00643-202ENST00000553426 ONECUT3O60422 494 aaPredicted RBP18.3■□□□□ 0.52
LINC00643-202ENST00000553426 NEUROD1Q13562 356 aa18.3■□□□□ 0.52
LINC00643-202ENST00000553426 POLR3AO14802 1390 aaPredicted RBP18.3■□□□□ 0.52
LINC00643-202ENST00000553426 SF3B2Q13435 895 aaKnown RBP18.29■□□□□ 0.52
LINC00643-202ENST00000553426 SIN3AQ96ST3 1273 aa18.29■□□□□ 0.52
LINC00643-202ENST00000553426 COL14A1Q05707 1796 aaKnown RBP18.29■□□□□ 0.52
LINC00643-202ENST00000553426 BRWD3Q6RI45 1802 aa18.28■□□□□ 0.52
LINC00643-202ENST00000553426 KRT27Q7Z3Y8 459 aa18.28■□□□□ 0.52
LINC00643-202ENST00000553426 ABTB2Q8N961 1025 aa18.27■□□□□ 0.52
LINC00643-202ENST00000553426 BLMP54132 1417 aaPredicted RBP18.26■□□□□ 0.51
LINC00643-202ENST00000553426 FAM98CQ17RN3 349 aaKnown RBP18.26■□□□□ 0.51
LINC00643-202ENST00000553426 NUTM2GQ5VZR2 741 aa18.26■□□□□ 0.51
LINC00643-202ENST00000553426 CABP2Q9NPB3 220 aa18.26■□□□□ 0.51
LINC00643-202ENST00000553426 PPIP5K1Q6PFW1 1433 aa18.25■□□□□ 0.51
LINC00643-202ENST00000553426 DEFB132Q7Z7B7 95 aa18.25■□□□□ 0.51
LINC00643-202ENST00000553426 ROCK2O75116 1388 aaKnown RBP18.24■□□□□ 0.51
LINC00643-202ENST00000553426 KIAA0232Q92628 1395 aa18.24■□□□□ 0.51
LINC00643-202ENST00000553426 TOPAZ1Q8N9V7 1692 aa18.24■□□□□ 0.51
LINC00643-202ENST00000553426 EVC2Q86UK5 1308 aa18.23■□□□□ 0.51
LINC00643-202ENST00000553426 ZC3H6P61129 1189 aaKnown RBP18.23■□□□□ 0.51
LINC00643-202ENST00000553426 NLRP13Q86W25 1043 aa18.23■□□□□ 0.51
LINC00643-202ENST00000553426 NRAPQ86VF7 1730 aa18.23■□□□□ 0.51
LINC00643-202ENST00000553426 SPATA31A5Q5VU36 1347 aa18.23■□□□□ 0.51
LINC00643-202ENST00000553426 SPATA31A7Q8IWB4 1347 aa18.23■□□□□ 0.51
LINC00643-202ENST00000553426 BRD4O60885 1362 aaPredicted RBP18.22■□□□□ 0.51
LINC00643-202ENST00000553426 EVA1CP58658 441 aa18.22■□□□□ 0.51
LINC00643-202ENST00000553426 CHRNA2Q15822 529 aa18.22■□□□□ 0.51
LINC00643-202ENST00000553426 CRYBG1Q9Y4K1 1723 aa18.21■□□□□ 0.51
LINC00643-202ENST00000553426 STRN4Q9NRL3 753 aa18.21■□□□□ 0.51
LINC00643-202ENST00000553426 CABP1Q9NZU7 370 aa18.21■□□□□ 0.51
LINC00643-202ENST00000553426 QRICH2Q9H0J4 1663 aa18.21■□□□□ 0.51
LINC00643-202ENST00000553426 TRPM1Q7Z4N2 1603 aa18.18■□□□□ 0.5
LINC00643-202ENST00000553426 PHRF1Q9P1Y6 1649 aaKnown RBP18.18■□□□□ 0.5
LINC00643-202ENST00000553426 SPATA31A1Q5TZJ5 1347 aa18.18■□□□□ 0.5
LINC00643-202ENST00000553426 LRP5O75197 1615 aa18.17■□□□□ 0.5
LINC00643-202ENST00000553426 BAG6P46379 1132 aa18.17■□□□□ 0.5
LINC00643-202ENST00000553426 USP19O94966 1318 aa18.17■□□□□ 0.5
LINC00643-202ENST00000553426 GCP02774 474 aa18.16■□□□□ 0.5
LINC00643-202ENST00000553426 NLRP6P59044 892 aa18.16■□□□□ 0.5
LINC00643-202ENST00000553426 CPDO75976 1380 aa18.16■□□□□ 0.5
LINC00643-202ENST00000553426 ZNF692Q9BU19 519 aaPredicted RBP18.15■□□□□ 0.5
LINC00643-202ENST00000553426 USP35Q9P2H5 1018 aa18.15■□□□□ 0.5
LINC00643-202ENST00000553426 USP6P35125 1406 aa18.15■□□□□ 0.5
LINC00643-202ENST00000553426 TONSLQ96HA7 1378 aa18.14■□□□□ 0.49
LINC00643-202ENST00000553426 SSH2Q76I76 1423 aa18.13■□□□□ 0.49
LINC00643-202ENST00000553426 NRKQ7Z2Y5 1582 aa18.13■□□□□ 0.49
LINC00643-202ENST00000553426 ZBTB7CA1YPR0 619 aa18.12■□□□□ 0.49
LINC00643-202ENST00000553426 PSDA5PKW4 1024 aaPredicted RBP18.12■□□□□ 0.49
LINC00643-202ENST00000553426 BARGINQ6ZT62 677 aa18.12■□□□□ 0.49
LINC00643-202ENST00000553426 CARD11Q9BXL7 1154 aa18.12■□□□□ 0.49
LINC00643-202ENST00000553426 PDE3BQ13370 1112 aa18.11■□□□□ 0.49
LINC00643-202ENST00000553426 FAM196AQ6ZSG2 479 aa18.11■□□□□ 0.49
LINC00643-202ENST00000553426 TCP11L2Q8N4U5 519 aa18.11■□□□□ 0.49
LINC00643-202ENST00000553426 THSD7AQ9UPZ6 1657 aa18.1■□□□□ 0.49
LINC00643-202ENST00000553426 FAM182BQ5T319 152 aa18.1■□□□□ 0.49
LINC00643-202ENST00000553426 LARP1Q6PKG0 1096 aaKnown RBP18.1■□□□□ 0.49
LINC00643-202ENST00000553426 THRAP3Q9Y2W1 955 aaKnown RBP18.1■□□□□ 0.49
LINC00643-202ENST00000553426 CAMTA1Q9Y6Y1 1673 aa18.09■□□□□ 0.49
LINC00643-202ENST00000553426 TTC21BQ7Z4L5 1316 aa18.08■□□□□ 0.49
LINC00643-202ENST00000553426 TRIM26Q12899 539 aaPredicted RBP18.08■□□□□ 0.48
LINC00643-202ENST00000553426 KCNH5Q8NCM2 988 aa18.08■□□□□ 0.48
LINC00643-202ENST00000553426 SBNO2Q9Y2G9 1366 aa18.07■□□□□ 0.48
LINC00643-202ENST00000553426 TTC21AQ8NDW8 1320 aa18.07■□□□□ 0.48
LINC00643-202ENST00000553426 AATKQ6ZMQ8 1374 aa18.06■□□□□ 0.48
LINC00643-202ENST00000553426 EN1Q05925 392 aaPredicted RBP18.06■□□□□ 0.48
LINC00643-202ENST00000553426 LMO7Q8WWI1 1683 aa18.06■□□□□ 0.48
LINC00643-202ENST00000553426 KTN1Q86UP2 1357 aaKnown RBP18.05■□□□□ 0.48
LINC00643-202ENST00000553426 RGPD1P0DJD0 1748 aa18.05■□□□□ 0.48
LINC00643-202ENST00000553426 COL5A2P05997 1499 aaPredicted RBP18.05■□□□□ 0.48
LINC00643-202ENST00000553426 SLIT3O75094 1523 aa18.04■□□□□ 0.48
LINC00643-202ENST00000553426 C11orf95C9JLR9 678 aaPredicted RBP18.04■□□□□ 0.48
LINC00643-202ENST00000553426 TRIM37O94972 964 aa18.04■□□□□ 0.48
LINC00643-202ENST00000553426 TOM1L2Q6ZVM7 507 aa18.04■□□□□ 0.48
LINC00643-202ENST00000553426 TMC1Q8TDI8 760 aa18.04■□□□□ 0.48
LINC00643-202ENST00000553426 CRB1P82279 1406 aa18.04■□□□□ 0.48
LINC00643-202ENST00000553426 SOX12O15370 315 aa18.02■□□□□ 0.48
LINC00643-202ENST00000553426 CPSF1Q10570 1443 aaKnown RBP18.02■□□□□ 0.48
LINC00643-202ENST00000553426 HDGFL2Q7Z4V5 671 aaPredicted RBP18.02■□□□□ 0.48
LINC00643-202ENST00000553426 PIK3C2AO00443 1686 aa18.02■□□□□ 0.47
LINC00643-202ENST00000553426 DISP2A7MBM2 1401 aa18.01■□□□□ 0.47
LINC00643-202ENST00000553426 SLC24A1O60721 1099 aa18.01■□□□□ 0.47
LINC00643-202ENST00000553426 APBA3O96018 575 aa18.01■□□□□ 0.47
LINC00643-202ENST00000553426 ARHGEF25Q86VW2 580 aa18.01■□□□□ 0.47
LINC00643-202ENST00000553426 AKAP12Q02952 1782 aa18■□□□□ 0.47
LINC00643-202ENST00000553426 CSB-PGBD3P0DP91 1061 aa18■□□□□ 0.47
LINC00643-202ENST00000553426 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18■□□□□ 0.47
LINC00643-202ENST00000553426 TERF2IPQ9NYB0 399 aa18■□□□□ 0.47
LINC00643-202ENST00000553426 CDCA7Q9BWT1 371 aaPredicted RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms