RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PRR36Q9H6K5 1346 aa34.74■■■■□ 3.15
CCDC88C-205ENST00000553403 XRN1Q8IZH2 1706 aaKnown RBP34.74■■■■□ 3.15
CCDC88C-205ENST00000553403 RUNDC1Q96C34 613 aa34.73■■■■□ 3.15
CCDC88C-205ENST00000553403 ZNF692Q9BU19 519 aaPredicted RBP34.73■■■■□ 3.15
CCDC88C-205ENST00000553403 COL3A1P02461 1466 aaPredicted RBP34.72■■■■□ 3.15
CCDC88C-205ENST00000553403 ITSN1Q15811 1721 aa34.71■■■■□ 3.15
CCDC88C-205ENST00000553403 TOPAZ1Q8N9V7 1692 aa34.71■■■■□ 3.15
CCDC88C-205ENST00000553403 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.7■■■■□ 3.14
CCDC88C-205ENST00000553403 RRP1P56182 461 aaKnown RBP34.69■■■■□ 3.14
CCDC88C-205ENST00000553403 ANKLE2Q86XL3 938 aa34.68■■■■□ 3.14
CCDC88C-205ENST00000553403 IQSEC2Q5JU85 1478 aa34.68■■■■□ 3.14
CCDC88C-205ENST00000553403 SLFN5Q08AF3 891 aa34.67■■■■□ 3.14
CCDC88C-205ENST00000553403 NCBP3Q53F19 620 aaKnown RBP34.67■■■■□ 3.14
CCDC88C-205ENST00000553403 DUSP27Q5VZP5 1158 aa34.67■■■■□ 3.14
CCDC88C-205ENST00000553403 PNPLA6Q8IY17 1366 aa34.67■■■■□ 3.14
CCDC88C-205ENST00000553403 PLEKHG3A1L390 1219 aa34.66■■■■□ 3.14
CCDC88C-205ENST00000553403 TRMT2AQ8IZ69 625 aaKnown RBP34.66■■■■□ 3.14
CCDC88C-205ENST00000553403 U2AF1L5P0DN76 240 aaPredicted RBP34.61■■■■□ 3.13
CCDC88C-205ENST00000553403 U2AF1Q01081 240 aaKnown RBP eCLIP34.61■■■■□ 3.13
CCDC88C-205ENST00000553403 E9PSI1 815 aa34.6■■■■□ 3.13
CCDC88C-205ENST00000553403 AATKQ6ZMQ8 1374 aa34.59■■■■□ 3.13
CCDC88C-205ENST00000553403 NME9Q86XW9 330 aa34.59■■■■□ 3.13
CCDC88C-205ENST00000553403 TCP11L2Q8N4U5 519 aa34.59■■■■□ 3.13
CCDC88C-205ENST00000553403 WWC1Q8IX03 1113 aa34.57■■■■□ 3.13
CCDC88C-205ENST00000553403 NRKQ7Z2Y5 1582 aa34.57■■■■□ 3.12
CCDC88C-205ENST00000553403 CCDC27Q2M243 656 aa34.57■■■■□ 3.12
CCDC88C-205ENST00000553403 PHF23Q9BUL5 403 aaPredicted RBP34.57■■■■□ 3.12
CCDC88C-205ENST00000553403 POLKQ9UBT6 870 aa34.57■■■■□ 3.12
CCDC88C-205ENST00000553403 DIAPH1O60610 1272 aaKnown RBP34.56■■■■□ 3.12
CCDC88C-205ENST00000553403 ACEP12821 1306 aa34.55■■■■□ 3.12
CCDC88C-205ENST00000553403 COG3Q96JB2 828 aa34.55■■■■□ 3.12
CCDC88C-205ENST00000553403 NKTRP30414 1462 aaKnown RBP34.54■■■■□ 3.12
CCDC88C-205ENST00000553403 KCNA6P17658 529 aa34.54■■■■□ 3.12
CCDC88C-205ENST00000553403 USP6P35125 1406 aa34.52■■■■□ 3.12
CCDC88C-205ENST00000553403 CHD2O14647 1828 aaKnown RBP34.52■■■■□ 3.12
CCDC88C-205ENST00000553403 ANKARQ7Z5J8 1434 aa34.52■■■■□ 3.12
CCDC88C-205ENST00000553403 TTC21BQ7Z4L5 1316 aa34.51■■■■□ 3.12
CCDC88C-205ENST00000553403 U2SURPO15042 1029 aaKnown RBP34.5■■■■□ 3.11
CCDC88C-205ENST00000553403 WDR63Q8IWG1 891 aa34.5■■■■□ 3.11
CCDC88C-205ENST00000553403 PNNQ9H307 717 aaKnown RBP34.5■■■■□ 3.11
CCDC88C-205ENST00000553403 ZNF335Q9H4Z2 1342 aaPredicted RBP34.5■■■■□ 3.11
CCDC88C-205ENST00000553403 MAP2P11137 1827 aaKnown RBP34.5■■■■□ 3.11
CCDC88C-205ENST00000553403 SPINK5Q9NQ38 1064 aaPredicted RBP34.5■■■■□ 3.11
CCDC88C-205ENST00000553403 PLEKHF1Q96S99 279 aa34.49■■■■□ 3.11
CCDC88C-205ENST00000553403 LTBP4Q8N2S1 1624 aa34.48■■■■□ 3.11
CCDC88C-205ENST00000553403 CDK12Q9NYV4 1490 aaPredicted RBP34.48■■■■□ 3.11
CCDC88C-205ENST00000553403 ZRANB1Q9UGI0 708 aa34.47■■■■□ 3.11
CCDC88C-205ENST00000553403 SSH2Q76I76 1423 aa34.47■■■■□ 3.11
CCDC88C-205ENST00000553403 NUTM2FA1L443 756 aa34.47■■■■□ 3.11
CCDC88C-205ENST00000553403 B4GALNT3Q6L9W6 998 aa34.47■■■■□ 3.11
CCDC88C-205ENST00000553403 NPHP4O75161 1426 aaPredicted RBP34.45■■■■□ 3.11
CCDC88C-205ENST00000553403 RRP7AQ9Y3A4 280 aaKnown RBP34.44■■■■□ 3.1
CCDC88C-205ENST00000553403 FMN2Q9NZ56 1722 aa34.44■■■■□ 3.1
CCDC88C-205ENST00000553403 OVOS2A0A0J9YW53 1432 aa34.43■■■■□ 3.1
CCDC88C-205ENST00000553403 OVOS2Q6IE36 1432 aa34.43■■■■□ 3.1
CCDC88C-205ENST00000553403 TTC21AQ8NDW8 1320 aa34.43■■■■□ 3.1
CCDC88C-205ENST00000553403 NEUROD2Q15784 382 aa34.42■■■■□ 3.1
CCDC88C-205ENST00000553403 FCHSD2O94868 740 aa34.41■■■■□ 3.1
CCDC88C-205ENST00000553403 FBLN1P23142 703 aa34.41■■■■□ 3.1
CCDC88C-205ENST00000553403 EMILIN1Q9Y6C2 1016 aa34.41■■■■□ 3.1
CCDC88C-205ENST00000553403 MAPK8IP3Q9UPT6 1336 aa34.4■■■■□ 3.1
CCDC88C-205ENST00000553403 PPM1GO15355 546 aaPredicted RBP34.39■■■■□ 3.1
CCDC88C-205ENST00000553403 TSHZ2Q9NRE2 1034 aa34.38■■■■□ 3.09
CCDC88C-205ENST00000553403 GOLGA6L2Q8N9W4 650 aaPredicted RBP34.38■■■■□ 3.09
CCDC88C-205ENST00000553403 RGPD8O14715 1765 aaPredicted RBP34.37■■■■□ 3.09
CCDC88C-205ENST00000553403 TMPOP42166 694 aaKnown RBP34.37■■■■□ 3.09
CCDC88C-205ENST00000553403 CCDC136Q96JN2 1154 aa34.37■■■■□ 3.09
CCDC88C-205ENST00000553403 NALCNQ8IZF0 1738 aa34.36■■■■□ 3.09
CCDC88C-205ENST00000553403 EXOC6Q8TAG9 804 aa34.36■■■■□ 3.09
CCDC88C-205ENST00000553403 USP31Q70CQ4 1352 aa34.36■■■■□ 3.09
CCDC88C-205ENST00000553403 IL13P35225 146 aa34.35■■■■□ 3.09
CCDC88C-205ENST00000553403 NGDNQ8NEJ9 315 aaKnown RBP34.35■■■■□ 3.09
CCDC88C-205ENST00000553403 PMFBP1Q8TBY8 1022 aa34.35■■■■□ 3.09
CCDC88C-205ENST00000553403 PLIN1O60240 522 aa34.34■■■■□ 3.09
CCDC88C-205ENST00000553403 RSPH6AQ9H0K4 717 aa34.33■■■■□ 3.09
CCDC88C-205ENST00000553403 LRRC7Q96NW7 1537 aa34.32■■■■□ 3.08
CCDC88C-205ENST00000553403 RRS1Q15050 365 aaKnown RBP34.31■■■■□ 3.08
CCDC88C-205ENST00000553403 MYH16Q9H6N6 1097 aa34.3■■■■□ 3.08
CCDC88C-205ENST00000553403 ADGRL3Q9HAR2 1447 aa34.29■■■■□ 3.08
CCDC88C-205ENST00000553403 NWD1Q149M9 1564 aa34.28■■■■□ 3.08
CCDC88C-205ENST00000553403 NEFMP07197 916 aa34.28■■■■□ 3.08
CCDC88C-205ENST00000553403 IL16Q14005 1332 aa34.27■■■■□ 3.08
CCDC88C-205ENST00000553403 TRIM35Q9UPQ4 493 aa34.27■■■■□ 3.08
CCDC88C-205ENST00000553403 PRKAR2BP31323 418 aa34.25■■■■□ 3.07
CCDC88C-205ENST00000553403 CRBNQ96SW2 442 aa34.25■■■■□ 3.07
CCDC88C-205ENST00000553403 UBAP1LF5GYI3 381 aa34.24■■■■□ 3.07
CCDC88C-205ENST00000553403 RIPK4P57078 832 aa34.23■■■■□ 3.07
CCDC88C-205ENST00000553403 PIK3C2AO00443 1686 aa34.2■■■■□ 3.07
CCDC88C-205ENST00000553403 USP54Q70EL1 1684 aa34.2■■■■□ 3.06
CCDC88C-205ENST00000553403 C20orf194Q5TEA3 1177 aa34.19■■■■□ 3.06
CCDC88C-205ENST00000553403 CT47B1P0C2W7 299 aaPredicted RBP34.18■■■■□ 3.06
CCDC88C-205ENST00000553403 NFE2L2Q16236 605 aa34.18■■■■□ 3.06
CCDC88C-205ENST00000553403 PHF8Q9UPP1 1060 aa34.18■■■■□ 3.06
CCDC88C-205ENST00000553403 BCAR3O75815 825 aa34.17■■■■□ 3.06
CCDC88C-205ENST00000553403 HMOX1P09601 288 aa34.17■■■■□ 3.06
CCDC88C-205ENST00000553403 PEAK1Q9H792 1746 aa34.16■■■■□ 3.06
CCDC88C-205ENST00000553403 EIF4A2Q14240 407 aaKnown RBP34.15■■■■□ 3.06
CCDC88C-205ENST00000553403 RARSP54136 660 aaKnown RBP34.13■■■■□ 3.05
CCDC88C-205ENST00000553403 FANCIQ9NVI1 1328 aa34.13■■■■□ 3.05
CCDC88C-205ENST00000553403 SBNO1A3KN83 1393 aa34.12■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms