RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 QRICH2Q9H0J4 1663 aa21.64■■□□□ 1.05
SHMT2-204ENST00000553324 RBM6P78332 1123 aaKnown RBP21.64■■□□□ 1.05
SHMT2-204ENST00000553324 ZNF692Q9BU19 519 aaPredicted RBP21.64■■□□□ 1.05
SHMT2-204ENST00000553324 ATAD2Q6PL18 1390 aa21.63■■□□□ 1.05
SHMT2-204ENST00000553324 PUS7Q96PZ0 661 aaKnown RBP21.63■■□□□ 1.05
SHMT2-204ENST00000553324 PLEKHG5O94827 1062 aa21.62■■□□□ 1.05
SHMT2-204ENST00000553324 ABTB2Q8N961 1025 aa21.61■■□□□ 1.05
SHMT2-204ENST00000553324 ST20-MTHFSA0A0A6YYL1 179 aa21.6■■□□□ 1.05
SHMT2-204ENST00000553324 UNC5CLQ8IV45 518 aa21.6■■□□□ 1.05
SHMT2-204ENST00000553324 NLRP13Q86W25 1043 aa21.58■■□□□ 1.05
SHMT2-204ENST00000553324 TRPM3Q9HCF6 1732 aaPredicted RBP21.57■■□□□ 1.04
SHMT2-204ENST00000553324 TOPAZ1Q8N9V7 1692 aa21.56■■□□□ 1.04
SHMT2-204ENST00000553324 FAM83GA6ND36 823 aa21.56■■□□□ 1.04
SHMT2-204ENST00000553324 BCL9LQ86UU0 1499 aa21.56■■□□□ 1.04
SHMT2-204ENST00000553324 TESK2Q96S53 571 aa21.55■■□□□ 1.04
SHMT2-204ENST00000553324 CDK12Q9NYV4 1490 aaPredicted RBP21.55■■□□□ 1.04
SHMT2-204ENST00000553324 GJD4Q96KN9 370 aaPredicted RBP21.54■■□□□ 1.04
SHMT2-204ENST00000553324 SLIT2O94813 1529 aa21.54■■□□□ 1.04
SHMT2-204ENST00000553324 USP6P35125 1406 aa21.54■■□□□ 1.04
SHMT2-204ENST00000553324 ALS2Q96Q42 1657 aa21.53■■□□□ 1.04
SHMT2-204ENST00000553324 NUTM2GQ5VZR2 741 aa21.53■■□□□ 1.04
SHMT2-204ENST00000553324 TMC1Q8TDI8 760 aa21.53■■□□□ 1.04
SHMT2-204ENST00000553324 ATRNO75882 1429 aa21.53■■□□□ 1.04
SHMT2-204ENST00000553324 USP47Q96K76 1375 aa21.52■■□□□ 1.04
SHMT2-204ENST00000553324 TMF1P82094 1093 aa21.52■■□□□ 1.04
SHMT2-204ENST00000553324 NLRP6P59044 892 aa21.51■■□□□ 1.03
SHMT2-204ENST00000553324 CDCA8Q53HL2 280 aa21.51■■□□□ 1.03
SHMT2-204ENST00000553324 HDGFL2Q7Z4V5 671 aaPredicted RBP21.51■■□□□ 1.03
SHMT2-204ENST00000553324 PRDM11Q9NQV5 511 aa21.51■■□□□ 1.03
SHMT2-204ENST00000553324 VPS72Q15906 364 aa21.5■■□□□ 1.03
SHMT2-204ENST00000553324 TERF2IPQ9NYB0 399 aa21.5■■□□□ 1.03
SHMT2-204ENST00000553324 TTC21AQ8NDW8 1320 aa21.5■■□□□ 1.03
SHMT2-204ENST00000553324 CPSF1Q10570 1443 aaKnown RBP21.49■■□□□ 1.03
SHMT2-204ENST00000553324 GCP02774 474 aa21.49■■□□□ 1.03
SHMT2-204ENST00000553324 BTG4Q9NY30 223 aa21.49■■□□□ 1.03
SHMT2-204ENST00000553324 TTC21BQ7Z4L5 1316 aa21.49■■□□□ 1.03
SHMT2-204ENST00000553324 MARF1Q9Y4F3 1742 aaKnown RBP21.49■■□□□ 1.03
SHMT2-204ENST00000553324 KTN1Q86UP2 1357 aaKnown RBP21.48■■□□□ 1.03
SHMT2-204ENST00000553324 SSH2Q76I76 1423 aa21.48■■□□□ 1.03
SHMT2-204ENST00000553324 SLC12A5Q9H2X9 1139 aa21.48■■□□□ 1.03
SHMT2-204ENST00000553324 USP19O94966 1318 aa21.48■■□□□ 1.03
SHMT2-204ENST00000553324 NINLQ9Y2I6 1382 aa21.48■■□□□ 1.03
SHMT2-204ENST00000553324 ZC3H6P61129 1189 aaKnown RBP21.47■■□□□ 1.03
SHMT2-204ENST00000553324 CCDC9Q9Y3X0 531 aaKnown RBP21.46■■□□□ 1.03
SHMT2-204ENST00000553324 KIAA0232Q92628 1395 aa21.46■■□□□ 1.03
SHMT2-204ENST00000553324 KCNH5Q8NCM2 988 aa21.44■■□□□ 1.02
SHMT2-204ENST00000553324 CPDO75976 1380 aa21.44■■□□□ 1.02
SHMT2-204ENST00000553324 RGS12O14924 1447 aa21.42■■□□□ 1.02
SHMT2-204ENST00000553324 EVA1CP58658 441 aa21.42■■□□□ 1.02
SHMT2-204ENST00000553324 ABCA3Q99758 1704 aa21.41■■□□□ 1.02
SHMT2-204ENST00000553324 ONECUT3O60422 494 aaPredicted RBP21.41■■□□□ 1.02
SHMT2-204ENST00000553324 EIF4G2P78344 907 aaKnown RBP eCLIP21.41■■□□□ 1.02
SHMT2-204ENST00000553324 CHRNA2Q15822 529 aa21.41■■□□□ 1.02
SHMT2-204ENST00000553324 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.4■■□□□ 1.02
SHMT2-204ENST00000553324 COL14A1Q05707 1796 aaKnown RBP21.4■■□□□ 1.02
SHMT2-204ENST00000553324 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.4■■□□□ 1.02
SHMT2-204ENST00000553324 NWD2Q9ULI1 1742 aa21.4■■□□□ 1.02
SHMT2-204ENST00000553324 EDC4Q6P2E9 1401 aaKnown RBP21.38■■□□□ 1.01
SHMT2-204ENST00000553324 UPF1Q92900 1129 aaKnown RBP eCLIP21.37■■□□□ 1.01
SHMT2-204ENST00000553324 CD163L1Q9NR16 1453 aa21.37■■□□□ 1.01
SHMT2-204ENST00000553324 A0A1W2PP64 1363 aa21.36■■□□□ 1.01
SHMT2-204ENST00000553324 SPATA31A5Q5VU36 1347 aa21.36■■□□□ 1.01
SHMT2-204ENST00000553324 SPATA31A7Q8IWB4 1347 aa21.36■■□□□ 1.01
SHMT2-204ENST00000553324 CRYBG1Q9Y4K1 1723 aa21.36■■□□□ 1.01
SHMT2-204ENST00000553324 SEPT12Q8IYM1 358 aa21.36■■□□□ 1.01
SHMT2-204ENST00000553324 STRN4Q9NRL3 753 aa21.36■■□□□ 1.01
SHMT2-204ENST00000553324 USP31Q70CQ4 1352 aa21.36■■□□□ 1.01
SHMT2-204ENST00000553324 PLCH1Q4KWH8 1693 aa21.34■■□□□ 1.01
SHMT2-204ENST00000553324 PHRF1Q9P1Y6 1649 aaKnown RBP21.34■■□□□ 1.01
SHMT2-204ENST00000553324 ARHGEF25Q86VW2 580 aa21.34■■□□□ 1.01
SHMT2-204ENST00000553324 AATKQ6ZMQ8 1374 aa21.34■■□□□ 1.01
SHMT2-204ENST00000553324 ANKRD36BQ8N2N9 1353 aa21.34■■□□□ 1.01
SHMT2-204ENST00000553324 AKAP12Q02952 1782 aa21.33■■□□□ 1.01
SHMT2-204ENST00000553324 ZBTB7CA1YPR0 619 aa21.33■■□□□ 1.01
SHMT2-204ENST00000553324 NME9Q86XW9 330 aa21.33■■□□□ 1.01
SHMT2-204ENST00000553324 SLIT3O75094 1523 aa21.33■■□□□ 1
SHMT2-204ENST00000553324 NRKQ7Z2Y5 1582 aa21.32■■□□□ 1
SHMT2-204ENST00000553324 FAM98CQ17RN3 349 aaKnown RBP21.32■■□□□ 1
SHMT2-204ENST00000553324 SPATA31A1Q5TZJ5 1347 aa21.31■■□□□ 1
SHMT2-204ENST00000553324 A0A0G2JS52 829 aa21.31■■□□□ 1
SHMT2-204ENST00000553324 HSPA5P11021 654 aaKnown RBP21.31■■□□□ 1
SHMT2-204ENST00000553324 MYT1Q01538 1121 aa21.31■■□□□ 1
SHMT2-204ENST00000553324 GLI3P10071 1580 aa21.31■■□□□ 1
SHMT2-204ENST00000553324 SOX12O15370 315 aa21.3■■□□□ 1
SHMT2-204ENST00000553324 CCDC125Q86Z20 511 aa21.3■■□□□ 1
SHMT2-204ENST00000553324 THRAP3Q9Y2W1 955 aaKnown RBP21.3■■□□□ 1
SHMT2-204ENST00000553324 PIK3C2AO00443 1686 aa21.3■■□□□ 1
SHMT2-204ENST00000553324 KRT27Q7Z3Y8 459 aa21.29■■□□□ 1
SHMT2-204ENST00000553324 COG3Q96JB2 828 aa21.29■■□□□ 1
SHMT2-204ENST00000553324 ZRANB1Q9UGI0 708 aa21.29■■□□□ 1
SHMT2-204ENST00000553324 LARP1Q6PKG0 1096 aaKnown RBP21.28■■□□□ 1
SHMT2-204ENST00000553324 BARGINQ6ZT62 677 aa21.28■■□□□ 1
SHMT2-204ENST00000553324 MON2Q7Z3U7 1717 aa21.28■■□□□ 1
SHMT2-204ENST00000553324 CAMTA1Q9Y6Y1 1673 aa21.28■■□□□ 1
SHMT2-204ENST00000553324 TCP11L2Q8N4U5 519 aa21.27■■□□□ 1
SHMT2-204ENST00000553324 USP35Q9P2H5 1018 aa21.27■■□□□ 1
SHMT2-204ENST00000553324 NRAPQ86VF7 1730 aa21.26■□□□□ 0.99
SHMT2-204ENST00000553324 AXIN2Q9Y2T1 843 aa21.25■□□□□ 0.99
SHMT2-204ENST00000553324 FYB1O15117 783 aa21.23■□□□□ 0.99
SHMT2-204ENST00000553324 TOM1L2Q6ZVM7 507 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms