RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 IQGAP1P46940 1657 aa17.8■□□□□ 0.44
RAPGEF3-216ENST00000547856 KANK1Q14678 1352 aa17.8■□□□□ 0.44
RAPGEF3-216ENST00000547856 PTMSP20962 102 aa17.8■□□□□ 0.44
RAPGEF3-216ENST00000547856 KIDINS220Q9ULH0 1771 aa17.8■□□□□ 0.44
RAPGEF3-216ENST00000547856 BAG4O95429 457 aaKnown RBP17.79■□□□□ 0.44
RAPGEF3-216ENST00000547856 PRIM1P49642 420 aaKnown RBP17.79■□□□□ 0.44
RAPGEF3-216ENST00000547856 ZSCAN23Q3MJ62 389 aa17.79■□□□□ 0.44
RAPGEF3-216ENST00000547856 CSPP1Q1MSJ5 1256 aa17.79■□□□□ 0.44
RAPGEF3-216ENST00000547856 MPNDQ8N594 471 aa17.79■□□□□ 0.44
RAPGEF3-216ENST00000547856 SNX21Q969T3 373 aa17.79■□□□□ 0.44
RAPGEF3-216ENST00000547856 STAC3Q96MF2 364 aa17.79■□□□□ 0.44
RAPGEF3-216ENST00000547856 NINLQ9Y2I6 1382 aa17.78■□□□□ 0.44
RAPGEF3-216ENST00000547856 IGSF3O75054 1194 aa17.78■□□□□ 0.44
RAPGEF3-216ENST00000547856 CHMP4BQ9H444 224 aaKnown RBP17.78■□□□□ 0.44
RAPGEF3-216ENST00000547856 GAS2L2Q8NHY3 880 aa17.78■□□□□ 0.44
RAPGEF3-216ENST00000547856 HS1BP3Q53T59 392 aa17.77■□□□□ 0.44
RAPGEF3-216ENST00000547856 RBM27Q9P2N5 1060 aaKnown RBP17.77■□□□□ 0.44
RAPGEF3-216ENST00000547856 UGGT1Q9NYU2 1555 aa17.77■□□□□ 0.44
RAPGEF3-216ENST00000547856 RBM25P49756 843 aaKnown RBP17.76■□□□□ 0.43
RAPGEF3-216ENST00000547856 FTSJ3Q8IY81 847 aaKnown RBP17.76■□□□□ 0.43
RAPGEF3-216ENST00000547856 ZMYM3Q14202 1370 aa17.76■□□□□ 0.43
RAPGEF3-216ENST00000547856 OSCARQ8IYS5 282 aa17.75■□□□□ 0.43
RAPGEF3-216ENST00000547856 RNF214Q8ND24 703 aa17.75■□□□□ 0.43
RAPGEF3-216ENST00000547856 NAP1L2Q9ULW6 460 aaPredicted RBP17.75■□□□□ 0.43
RAPGEF3-216ENST00000547856 PDLIM2Q96JY6 352 aa17.75■□□□□ 0.43
RAPGEF3-216ENST00000547856 SPDYE4A6NLX3 237 aa17.74■□□□□ 0.43
RAPGEF3-216ENST00000547856 K7ELQ4 463 aaPredicted RBP17.74■□□□□ 0.43
RAPGEF3-216ENST00000547856 ZNF445P59923 1031 aa17.74■□□□□ 0.43
RAPGEF3-216ENST00000547856 VGLL3A8MV65 326 aa17.74■□□□□ 0.43
RAPGEF3-216ENST00000547856 MVPQ14764 893 aaKnown RBP17.74■□□□□ 0.43
RAPGEF3-216ENST00000547856 ATP2B3Q16720 1220 aa17.74■□□□□ 0.43
RAPGEF3-216ENST00000547856 PTMAP06454 111 aaKnown RBP17.73■□□□□ 0.43
RAPGEF3-216ENST00000547856 SCAF11Q99590 1463 aaKnown RBP17.73■□□□□ 0.43
RAPGEF3-216ENST00000547856 KIF2CQ99661 725 aa17.73■□□□□ 0.43
RAPGEF3-216ENST00000547856 NPM1P06748 294 aaKnown RBP eCLIP17.72■□□□□ 0.43
RAPGEF3-216ENST00000547856 ZNF710Q8N1W2 664 aa17.72■□□□□ 0.43
RAPGEF3-216ENST00000547856 LNPKQ9C0E8 428 aa17.72■□□□□ 0.43
RAPGEF3-216ENST00000547856 ZNF518AQ6AHZ1 1483 aa17.72■□□□□ 0.43
RAPGEF3-216ENST00000547856 EFCAB6Q5THR3 1501 aa17.71■□□□□ 0.43
RAPGEF3-216ENST00000547856 PPRC1Q5VV67 1664 aaKnown RBP17.71■□□□□ 0.43
RAPGEF3-216ENST00000547856 CHAMP1Q96JM3 812 aa17.71■□□□□ 0.43
RAPGEF3-216ENST00000547856 PRPF40AO75400 957 aaKnown RBP17.71■□□□□ 0.43
RAPGEF3-216ENST00000547856 CCDC39Q9UFE4 941 aa17.71■□□□□ 0.43
RAPGEF3-216ENST00000547856 ITPRIPQ8IWB1 547 aa17.7■□□□□ 0.42
RAPGEF3-216ENST00000547856 KIF1BO60333 1816 aa17.7■□□□□ 0.42
RAPGEF3-216ENST00000547856 PKP1Q13835 747 aa17.7■□□□□ 0.42
RAPGEF3-216ENST00000547856 IBTKQ9P2D0 1353 aaPredicted RBP17.7■□□□□ 0.42
RAPGEF3-216ENST00000547856 CD109Q6YHK3 1445 aa17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 SYCE3A1L190 88 aa17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 ZBTB22O15209 634 aa17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 NEURL4Q96JN8 1562 aa17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 DZIP1LQ8IYY4 767 aaKnown RBP17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 GTPBP4Q9BZE4 634 aaKnown RBP17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 ADGRF5Q8IZF2 1346 aa17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 KIAA1210Q9ULL0 1709 aa17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 CFAP65Q6ZU64 1925 aaKnown RBP17.69■□□□□ 0.42
RAPGEF3-216ENST00000547856 CFAP70Q5T0N1 1121 aa17.68■□□□□ 0.42
RAPGEF3-216ENST00000547856 MYRIPQ8NFW9 859 aa17.68■□□□□ 0.42
RAPGEF3-216ENST00000547856 ZNF830Q96NB3 372 aaPredicted RBP17.68■□□□□ 0.42
RAPGEF3-216ENST00000547856 LMBRD1Q9NUN5 540 aa17.68■□□□□ 0.42
RAPGEF3-216ENST00000547856 MROH2AA6NES4 1674 aa17.68■□□□□ 0.42
RAPGEF3-216ENST00000547856 MAP3K4Q9Y6R4 1608 aa17.68■□□□□ 0.42
RAPGEF3-216ENST00000547856 PDIA4P13667 645 aaKnown RBP17.67■□□□□ 0.42
RAPGEF3-216ENST00000547856 TMEM51Q9NW97 253 aa17.67■□□□□ 0.42
RAPGEF3-216ENST00000547856 PIK3C2GO75747 1445 aa17.67■□□□□ 0.42
RAPGEF3-216ENST00000547856 ABCA6Q8N139 1617 aa17.67■□□□□ 0.42
RAPGEF3-216ENST00000547856 KIAA2012Q0VF49 1180 aa17.67■□□□□ 0.42
RAPGEF3-216ENST00000547856 ZKSCAN2Q63HK3 967 aa17.67■□□□□ 0.42
RAPGEF3-216ENST00000547856 C17orf53Q8N3J3 647 aaPredicted RBP17.67■□□□□ 0.42
RAPGEF3-216ENST00000547856 IFT172Q9UG01 1749 aa17.67■□□□□ 0.42
RAPGEF3-216ENST00000547856 KIF20AO95235 890 aa17.66■□□□□ 0.42
RAPGEF3-216ENST00000547856 POGZQ7Z3K3 1410 aa17.66■□□□□ 0.42
RAPGEF3-216ENST00000547856 MCM5P33992 734 aa17.66■□□□□ 0.42
RAPGEF3-216ENST00000547856 FOXD4L5Q5VV16 416 aaPredicted RBP17.66■□□□□ 0.42
RAPGEF3-216ENST00000547856 GPT2Q8TD30 523 aa17.66■□□□□ 0.42
RAPGEF3-216ENST00000547856 FOXD4L4Q8WXT5 416 aaPredicted RBP17.66■□□□□ 0.42
RAPGEF3-216ENST00000547856 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.66■□□□□ 0.42
RAPGEF3-216ENST00000547856 FRMPD1Q5SYB0 1578 aa17.66■□□□□ 0.42
RAPGEF3-216ENST00000547856 MAPK8IP2Q13387 824 aaPredicted RBP17.65■□□□□ 0.42
RAPGEF3-216ENST00000547856 PLCD3Q8N3E9 789 aa17.65■□□□□ 0.42
RAPGEF3-216ENST00000547856 TCP11L2Q8N4U5 519 aa17.65■□□□□ 0.42
RAPGEF3-216ENST00000547856 MYOM1P52179 1685 aa17.65■□□□□ 0.42
RAPGEF3-216ENST00000547856 LMTK2Q8IWU2 1503 aa17.65■□□□□ 0.42
RAPGEF3-216ENST00000547856 LETM1O95202 739 aaPredicted RBP17.65■□□□□ 0.42
RAPGEF3-216ENST00000547856 CGNQ9P2M7 1197 aaKnown RBP17.65■□□□□ 0.42
RAPGEF3-216ENST00000547856 MYOM2P54296 1465 aa17.65■□□□□ 0.42
RAPGEF3-216ENST00000547856 SYNMO15061 1565 aa17.64■□□□□ 0.42
RAPGEF3-216ENST00000547856 NSFL1CQ9UNZ2 370 aaKnown RBP17.64■□□□□ 0.41
RAPGEF3-216ENST00000547856 TMEM63CQ9P1W3 806 aa17.63■□□□□ 0.41
RAPGEF3-216ENST00000547856 CFAP74Q9C0B2 1584 aa17.63■□□□□ 0.41
RAPGEF3-216ENST00000547856 CDCA8Q53HL2 280 aa17.63■□□□□ 0.41
RAPGEF3-216ENST00000547856 GGT6Q6P531 493 aa17.63■□□□□ 0.41
RAPGEF3-216ENST00000547856 MLH3Q9UHC1 1453 aa17.63■□□□□ 0.41
RAPGEF3-216ENST00000547856 AK9Q5TCS8 1911 aa17.62■□□□□ 0.41
RAPGEF3-216ENST00000547856 HDAC1Q13547 482 aaPredicted RBP17.62■□□□□ 0.41
RAPGEF3-216ENST00000547856 SMC4Q9NTJ3 1288 aa17.62■□□□□ 0.41
RAPGEF3-216ENST00000547856 ASXL1Q8IXJ9 1541 aa17.62■□□□□ 0.41
RAPGEF3-216ENST00000547856 CLEC17AQ6ZS10 378 aa17.62■□□□□ 0.41
RAPGEF3-216ENST00000547856 TSR2Q969E8 191 aaKnown RBP17.62■□□□□ 0.41
RAPGEF3-216ENST00000547856 HECW2Q9P2P5 1572 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms