RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 C8orf37Q96NL8 207 aa22.4■■□□□ 1.18
CHMP1A-204ENST00000547687 MYOM1P52179 1685 aa22.4■■□□□ 1.18
CHMP1A-204ENST00000547687 ANKARQ7Z5J8 1434 aa22.39■■□□□ 1.18
CHMP1A-204ENST00000547687 COL22A1Q8NFW1 1626 aaPredicted RBP22.39■■□□□ 1.17
CHMP1A-204ENST00000547687 CDK19Q9BWU1 502 aa22.38■■□□□ 1.17
CHMP1A-204ENST00000547687 KTN1Q86UP2 1357 aaKnown RBP22.37■■□□□ 1.17
CHMP1A-204ENST00000547687 PSME1Q06323 249 aa22.36■■□□□ 1.17
CHMP1A-204ENST00000547687 RALBP1Q15311 655 aa22.36■■□□□ 1.17
CHMP1A-204ENST00000547687 AFF2P51816 1311 aa22.36■■□□□ 1.17
CHMP1A-204ENST00000547687 ITSN1Q15811 1721 aa22.36■■□□□ 1.17
CHMP1A-204ENST00000547687 LMOD2Q6P5Q4 547 aa22.36■■□□□ 1.17
CHMP1A-204ENST00000547687 ATP7BP35670 1465 aa22.36■■□□□ 1.17
CHMP1A-204ENST00000547687 NUDT16Q96DE0 195 aaKnown RBP22.35■■□□□ 1.17
CHMP1A-204ENST00000547687 SPATA31A3Q5VYP0 1347 aa22.35■■□□□ 1.17
CHMP1A-204ENST00000547687 EVC2Q86UK5 1308 aa22.34■■□□□ 1.17
CHMP1A-204ENST00000547687 MARF1Q9Y4F3 1742 aaKnown RBP22.33■■□□□ 1.17
CHMP1A-204ENST00000547687 TRPM3Q9HCF6 1732 aaPredicted RBP22.33■■□□□ 1.17
CHMP1A-204ENST00000547687 CABLES1Q8TDN4 633 aa22.33■■□□□ 1.16
CHMP1A-204ENST00000547687 FKBP8Q14318 412 aa22.32■■□□□ 1.16
CHMP1A-204ENST00000547687 NGLY1Q96IV0 654 aa22.32■■□□□ 1.16
CHMP1A-204ENST00000547687 TOPAZ1Q8N9V7 1692 aa22.32■■□□□ 1.16
CHMP1A-204ENST00000547687 TNS3Q68CZ2 1445 aa22.31■■□□□ 1.16
CHMP1A-204ENST00000547687 NEFLP07196 543 aa22.31■■□□□ 1.16
CHMP1A-204ENST00000547687 NGDNQ8NEJ9 315 aaKnown RBP22.31■■□□□ 1.16
CHMP1A-204ENST00000547687 TMC1Q8TDI8 760 aa22.31■■□□□ 1.16
CHMP1A-204ENST00000547687 CABP2Q9NPB3 220 aa22.31■■□□□ 1.16
CHMP1A-204ENST00000547687 MYBBP1AQ9BQG0 1328 aaKnown RBP22.31■■□□□ 1.16
CHMP1A-204ENST00000547687 SRPK2P78362 688 aaKnown RBP22.3■■□□□ 1.16
CHMP1A-204ENST00000547687 ZNF772Q68DY9 489 aaPredicted RBP22.3■■□□□ 1.16
CHMP1A-204ENST00000547687 ZBED9Q6R2W3 1325 aa22.3■■□□□ 1.16
CHMP1A-204ENST00000547687 CC2D1BQ5T0F9 858 aaKnown RBP22.28■■□□□ 1.16
CHMP1A-204ENST00000547687 PUS7Q96PZ0 661 aaKnown RBP22.28■■□□□ 1.16
CHMP1A-204ENST00000547687 KNSTRNQ9Y448 316 aa22.28■■□□□ 1.16
CHMP1A-204ENST00000547687 ABCA3Q99758 1704 aa22.28■■□□□ 1.16
CHMP1A-204ENST00000547687 PNISRQ8TF01 805 aaKnown RBP22.28■■□□□ 1.16
CHMP1A-204ENST00000547687 PAK3O75914 559 aaPredicted RBP22.27■■□□□ 1.16
CHMP1A-204ENST00000547687 BRD4O60885 1362 aaPredicted RBP22.27■■□□□ 1.16
CHMP1A-204ENST00000547687 ALS2Q96Q42 1657 aa22.27■■□□□ 1.16
CHMP1A-204ENST00000547687 SLC12A5Q9H2X9 1139 aa22.26■■□□□ 1.15
CHMP1A-204ENST00000547687 SBNO1A3KN83 1393 aa22.26■■□□□ 1.15
CHMP1A-204ENST00000547687 PARD3Q8TEW0 1356 aa22.26■■□□□ 1.15
CHMP1A-204ENST00000547687 CCDC61Q9Y6R9 512 aa22.24■■□□□ 1.15
CHMP1A-204ENST00000547687 ACEP12821 1306 aa22.24■■□□□ 1.15
CHMP1A-204ENST00000547687 HAP1P54257 671 aaPredicted RBP22.24■■□□□ 1.15
CHMP1A-204ENST00000547687 AMER1Q5JTC6 1135 aaPredicted RBP22.23■■□□□ 1.15
CHMP1A-204ENST00000547687 CARD14Q9BXL6 1004 aa22.23■■□□□ 1.15
CHMP1A-204ENST00000547687 QTRT2Q9H974 415 aaKnown RBP22.23■■□□□ 1.15
CHMP1A-204ENST00000547687 PPIP5K1Q6PFW1 1433 aa22.23■■□□□ 1.15
CHMP1A-204ENST00000547687 USP21Q9UK80 565 aa22.23■■□□□ 1.15
CHMP1A-204ENST00000547687 ARHGEF10O15013 1369 aa22.22■■□□□ 1.15
CHMP1A-204ENST00000547687 RXRBP28702 533 aa22.21■■□□□ 1.15
CHMP1A-204ENST00000547687 NUTM2GQ5VZR2 741 aa22.21■■□□□ 1.15
CHMP1A-204ENST00000547687 NLRP13Q86W25 1043 aa22.21■■□□□ 1.15
CHMP1A-204ENST00000547687 CABP1Q9NZU7 370 aa22.19■■□□□ 1.14
CHMP1A-204ENST00000547687 POLR3AO14802 1390 aaPredicted RBP22.19■■□□□ 1.14
CHMP1A-204ENST00000547687 PLEKHG3A1L390 1219 aa22.18■■□□□ 1.14
CHMP1A-204ENST00000547687 FNBP4Q8N3X1 1017 aaPredicted RBP22.18■■□□□ 1.14
CHMP1A-204ENST00000547687 ATAD2Q6PL18 1390 aa22.18■■□□□ 1.14
CHMP1A-204ENST00000547687 CRYBG1Q9Y4K1 1723 aa22.18■■□□□ 1.14
CHMP1A-204ENST00000547687 BCL9LQ86UU0 1499 aa22.17■■□□□ 1.14
CHMP1A-204ENST00000547687 PLCH1Q4KWH8 1693 aa22.17■■□□□ 1.14
CHMP1A-204ENST00000547687 NPC1L1Q9UHC9 1359 aa22.16■■□□□ 1.14
CHMP1A-204ENST00000547687 EP400Q96L91 3159 aa22.16■■□□□ 1.14
CHMP1A-204ENST00000547687 NSD3Q9BZ95 1437 aa22.15■■□□□ 1.14
CHMP1A-204ENST00000547687 ANKRD36BQ8N2N9 1353 aa22.15■■□□□ 1.14
CHMP1A-204ENST00000547687 NINLQ9Y2I6 1382 aa22.15■■□□□ 1.14
CHMP1A-204ENST00000547687 RBM6P78332 1123 aaKnown RBP22.13■■□□□ 1.13
CHMP1A-204ENST00000547687 FAM83GA6ND36 823 aa22.13■■□□□ 1.13
CHMP1A-204ENST00000547687 TRPC5Q9UL62 973 aaPredicted RBP22.13■■□□□ 1.13
CHMP1A-204ENST00000547687 RGS12O14924 1447 aa22.12■■□□□ 1.13
CHMP1A-204ENST00000547687 SLIT2O94813 1529 aa22.12■■□□□ 1.13
CHMP1A-204ENST00000547687 ATRNO75882 1429 aa22.12■■□□□ 1.13
CHMP1A-204ENST00000547687 PHRF1Q9P1Y6 1649 aaKnown RBP22.12■■□□□ 1.13
CHMP1A-204ENST00000547687 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.11■■□□□ 1.13
CHMP1A-204ENST00000547687 A0A1W2PP64 1363 aa22.1■■□□□ 1.13
CHMP1A-204ENST00000547687 ABTB2Q8N961 1025 aa22.1■■□□□ 1.13
CHMP1A-204ENST00000547687 AKAP12Q02952 1782 aa22.1■■□□□ 1.13
CHMP1A-204ENST00000547687 UNC5CLQ8IV45 518 aa22.09■■□□□ 1.13
CHMP1A-204ENST00000547687 CD163L1Q9NR16 1453 aa22.09■■□□□ 1.13
CHMP1A-204ENST00000547687 NWD2Q9ULI1 1742 aa22.08■■□□□ 1.13
CHMP1A-204ENST00000547687 PPP2R1AP30153 589 aa22.07■■□□□ 1.12
CHMP1A-204ENST00000547687 USP6P35125 1406 aa22.07■■□□□ 1.12
CHMP1A-204ENST00000547687 ZC3H6P61129 1189 aaKnown RBP22.07■■□□□ 1.12
CHMP1A-204ENST00000547687 TERF2IPQ9NYB0 399 aa22.07■■□□□ 1.12
CHMP1A-204ENST00000547687 SMG6Q86US8 1419 aaKnown RBP22.07■■□□□ 1.12
CHMP1A-204ENST00000547687 CDK12Q9NYV4 1490 aaPredicted RBP22.06■■□□□ 1.12
CHMP1A-204ENST00000547687 CHRNA2Q15822 529 aa22.06■■□□□ 1.12
CHMP1A-204ENST00000547687 GLI3P10071 1580 aa22.05■■□□□ 1.12
CHMP1A-204ENST00000547687 NRAPQ86VF7 1730 aa22.05■■□□□ 1.12
CHMP1A-204ENST00000547687 CGNL1Q0VF96 1302 aa22.05■■□□□ 1.12
CHMP1A-204ENST00000547687 COL14A1Q05707 1796 aaKnown RBP22.05■■□□□ 1.12
CHMP1A-204ENST00000547687 BTG4Q9NY30 223 aa22.05■■□□□ 1.12
CHMP1A-204ENST00000547687 PIK3C2AO00443 1686 aa22.05■■□□□ 1.12
CHMP1A-204ENST00000547687 KIAA0232Q92628 1395 aa22.05■■□□□ 1.12
CHMP1A-204ENST00000547687 GJD4Q96KN9 370 aaPredicted RBP22.04■■□□□ 1.12
CHMP1A-204ENST00000547687 CCDC9Q9Y3X0 531 aaKnown RBP22.04■■□□□ 1.12
CHMP1A-204ENST00000547687 PRDM11Q9NQV5 511 aa22.04■■□□□ 1.12
CHMP1A-204ENST00000547687 NUDCQ9Y266 331 aa22.04■■□□□ 1.12
CHMP1A-204ENST00000547687 NRKQ7Z2Y5 1582 aa22.03■■□□□ 1.12
CHMP1A-204ENST00000547687 SENP3-EIF4A1A0A087X0R7 540 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms