RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 TOPAZ1Q8N9V7 1692 aa17.73■□□□□ 0.43
PTCH1-215ENST00000547672 TTC21BQ7Z4L5 1316 aa17.72■□□□□ 0.43
PTCH1-215ENST00000547672 DIAPH1O60610 1272 aaKnown RBP17.72■□□□□ 0.43
PTCH1-215ENST00000547672 NEFMP07197 916 aa17.72■□□□□ 0.43
PTCH1-215ENST00000547672 SUPT16HQ9Y5B9 1047 aaKnown RBP17.72■□□□□ 0.43
PTCH1-215ENST00000547672 C14orf37Q86TY3 774 aa17.71■□□□□ 0.43
PTCH1-215ENST00000547672 USP6P35125 1406 aa17.71■□□□□ 0.43
PTCH1-215ENST00000547672 NCOA3Q9Y6Q9 1424 aa17.71■□□□□ 0.43
PTCH1-215ENST00000547672 PNPLA6Q8IY17 1366 aa17.7■□□□□ 0.42
PTCH1-215ENST00000547672 PROSER2Q86WR7 435 aaPredicted RBP17.7■□□□□ 0.42
PTCH1-215ENST00000547672 ADGRL3Q9HAR2 1447 aa17.7■□□□□ 0.42
PTCH1-215ENST00000547672 U2AF1L5P0DN76 240 aaPredicted RBP17.69■□□□□ 0.42
PTCH1-215ENST00000547672 U2AF1Q01081 240 aaKnown RBP eCLIP17.69■□□□□ 0.42
PTCH1-215ENST00000547672 GOLGA2Q08379 1002 aa17.69■□□□□ 0.42
PTCH1-215ENST00000547672 FKBP8Q14318 412 aa17.69■□□□□ 0.42
PTCH1-215ENST00000547672 NKTRP30414 1462 aaKnown RBP17.69■□□□□ 0.42
PTCH1-215ENST00000547672 NWD1Q149M9 1564 aa17.68■□□□□ 0.42
PTCH1-215ENST00000547672 NME9Q86XW9 330 aa17.68■□□□□ 0.42
PTCH1-215ENST00000547672 FMN2Q9NZ56 1722 aa17.68■□□□□ 0.42
PTCH1-215ENST00000547672 NUTM2FA1L443 756 aa17.67■□□□□ 0.42
PTCH1-215ENST00000547672 APAF1O14727 1248 aa17.67■□□□□ 0.42
PTCH1-215ENST00000547672 C19orf44Q9H6X5 657 aa17.67■□□□□ 0.42
PTCH1-215ENST00000547672 POLKQ9UBT6 870 aa17.67■□□□□ 0.42
PTCH1-215ENST00000547672 FCHSD2O94868 740 aa17.66■□□□□ 0.42
PTCH1-215ENST00000547672 CCDC27Q2M243 656 aa17.66■□□□□ 0.42
PTCH1-215ENST00000547672 PHF8Q9UPP1 1060 aa17.66■□□□□ 0.42
PTCH1-215ENST00000547672 SALL2Q9Y467 1007 aaPredicted RBP17.66■□□□□ 0.42
PTCH1-215ENST00000547672 USP31Q70CQ4 1352 aa17.65■□□□□ 0.42
PTCH1-215ENST00000547672 SSH2Q76I76 1423 aa17.64■□□□□ 0.42
PTCH1-215ENST00000547672 E9PSI1 815 aa17.64■□□□□ 0.41
PTCH1-215ENST00000547672 U2SURPO15042 1029 aaKnown RBP17.64■□□□□ 0.41
PTCH1-215ENST00000547672 CCDC146Q8IYE0 955 aa17.64■□□□□ 0.41
PTCH1-215ENST00000547672 PMFBP1Q8TBY8 1022 aa17.64■□□□□ 0.41
PTCH1-215ENST00000547672 MAPK8IP3Q9UPT6 1336 aa17.64■□□□□ 0.41
PTCH1-215ENST00000547672 WDR63Q8IWG1 891 aa17.63■□□□□ 0.41
PTCH1-215ENST00000547672 SHPRHQ149N8 1683 aa17.63■□□□□ 0.41
PTCH1-215ENST00000547672 PPM1GO15355 546 aaPredicted RBP17.62■□□□□ 0.41
PTCH1-215ENST00000547672 TCP11L2Q8N4U5 519 aa17.62■□□□□ 0.41
PTCH1-215ENST00000547672 RCAN3Q9UKA8 241 aa17.62■□□□□ 0.41
PTCH1-215ENST00000547672 MAP2P11137 1827 aaKnown RBP17.62■□□□□ 0.41
PTCH1-215ENST00000547672 ZNF521Q96K83 1311 aa17.62■□□□□ 0.41
PTCH1-215ENST00000547672 CDK12Q9NYV4 1490 aaPredicted RBP17.62■□□□□ 0.41
PTCH1-215ENST00000547672 ATF3P18847 181 aa17.61■□□□□ 0.41
PTCH1-215ENST00000547672 PSME1Q06323 249 aa17.61■□□□□ 0.41
PTCH1-215ENST00000547672 DMRT2Q9Y5R5 561 aa17.61■□□□□ 0.41
PTCH1-215ENST00000547672 NRKQ7Z2Y5 1582 aa17.61■□□□□ 0.41
PTCH1-215ENST00000547672 ESCO1Q5FWF5 840 aa17.6■□□□□ 0.41
PTCH1-215ENST00000547672 RNF123Q5XPI4 1314 aa17.6■□□□□ 0.41
PTCH1-215ENST00000547672 KIF24Q5T7B8 1368 aa17.6■□□□□ 0.41
PTCH1-215ENST00000547672 NALCNQ8IZF0 1738 aa17.6■□□□□ 0.41
PTCH1-215ENST00000547672 COL3A1P02461 1466 aaPredicted RBP17.59■□□□□ 0.41
PTCH1-215ENST00000547672 OVOS2A0A0J9YW53 1432 aa17.59■□□□□ 0.41
PTCH1-215ENST00000547672 DCCP43146 1447 aa17.59■□□□□ 0.41
PTCH1-215ENST00000547672 OVOS2Q6IE36 1432 aa17.59■□□□□ 0.41
PTCH1-215ENST00000547672 SLFN5Q08AF3 891 aa17.59■□□□□ 0.41
PTCH1-215ENST00000547672 RGPD8O14715 1765 aaPredicted RBP17.58■□□□□ 0.41
PTCH1-215ENST00000547672 NLRP6P59044 892 aa17.58■□□□□ 0.4
PTCH1-215ENST00000547672 WWC1Q8IX03 1113 aa17.58■□□□□ 0.4
PTCH1-215ENST00000547672 CALD1Q05682 793 aaKnown RBP17.57■□□□□ 0.4
PTCH1-215ENST00000547672 CADPS2Q86UW7 1296 aa17.57■□□□□ 0.4
PTCH1-215ENST00000547672 TRMT2AQ8IZ69 625 aaKnown RBP17.57■□□□□ 0.4
PTCH1-215ENST00000547672 ABTB2Q8N961 1025 aa17.57■□□□□ 0.4
PTCH1-215ENST00000547672 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.57■□□□□ 0.4
PTCH1-215ENST00000547672 IL13P35225 146 aa17.56■□□□□ 0.4
PTCH1-215ENST00000547672 ZRANB1Q9UGI0 708 aa17.56■□□□□ 0.4
PTCH1-215ENST00000547672 LRRC7Q96NW7 1537 aa17.56■□□□□ 0.4
PTCH1-215ENST00000547672 PAK3O75914 559 aaPredicted RBP17.55■□□□□ 0.4
PTCH1-215ENST00000547672 KCNH5Q8NCM2 988 aa17.55■□□□□ 0.4
PTCH1-215ENST00000547672 CDCA7LQ96GN5 454 aa17.55■□□□□ 0.4
PTCH1-215ENST00000547672 PLEKHF1Q96S99 279 aa17.55■□□□□ 0.4
PTCH1-215ENST00000547672 MYH16Q9H6N6 1097 aa17.55■□□□□ 0.4
PTCH1-215ENST00000547672 EMILIN1Q9Y6C2 1016 aa17.55■□□□□ 0.4
PTCH1-215ENST00000547672 LMOD3Q0VAK6 560 aa17.54■□□□□ 0.4
PTCH1-215ENST00000547672 DUSP27Q5VZP5 1158 aa17.54■□□□□ 0.4
PTCH1-215ENST00000547672 PPP4R2Q9NY27 417 aa17.54■□□□□ 0.4
PTCH1-215ENST00000547672 IL16Q14005 1332 aa17.53■□□□□ 0.4
PTCH1-215ENST00000547672 LMTK3Q96Q04 1460 aa17.53■□□□□ 0.4
PTCH1-215ENST00000547672 TMPOP42166 694 aaKnown RBP17.53■□□□□ 0.4
PTCH1-215ENST00000547672 HSPA2P54652 639 aa17.53■□□□□ 0.4
PTCH1-215ENST00000547672 SBNO1A3KN83 1393 aa17.53■□□□□ 0.4
PTCH1-215ENST00000547672 MSH6P52701 1360 aa17.53■□□□□ 0.4
PTCH1-215ENST00000547672 KIF1AQ12756 1690 aa17.52■□□□□ 0.4
PTCH1-215ENST00000547672 SENP3-EIF4A1A0A087X0R7 540 aa17.52■□□□□ 0.4
PTCH1-215ENST00000547672 AMPHP49418 695 aa17.52■□□□□ 0.4
PTCH1-215ENST00000547672 RRS1Q15050 365 aaKnown RBP17.52■□□□□ 0.4
PTCH1-215ENST00000547672 FLT4P35916 1363 aa17.52■□□□□ 0.39
PTCH1-215ENST00000547672 IQSEC2Q5JU85 1478 aa17.51■□□□□ 0.39
PTCH1-215ENST00000547672 CT47B1P0C2W7 299 aaPredicted RBP17.51■□□□□ 0.39
PTCH1-215ENST00000547672 NEUROD2Q15784 382 aa17.51■□□□□ 0.39
PTCH1-215ENST00000547672 USP54Q70EL1 1684 aa17.51■□□□□ 0.39
PTCH1-215ENST00000547672 TMEM94Q12767 1356 aa17.51■□□□□ 0.39
PTCH1-215ENST00000547672 RSPH6AQ9H0K4 717 aa17.5■□□□□ 0.39
PTCH1-215ENST00000547672 RRP1P56182 461 aaKnown RBP17.49■□□□□ 0.39
PTCH1-215ENST00000547672 RIPK4P57078 832 aa17.49■□□□□ 0.39
PTCH1-215ENST00000547672 RBM33Q96EV2 1170 aaKnown RBP17.49■□□□□ 0.39
PTCH1-215ENST00000547672 C1orf167Q5SNV9 1468 aa17.49■□□□□ 0.39
PTCH1-215ENST00000547672 PRKAR2BP31323 418 aa17.48■□□□□ 0.39
PTCH1-215ENST00000547672 NFE2L2Q16236 605 aa17.48■□□□□ 0.39
PTCH1-215ENST00000547672 FBLN1P23142 703 aa17.47■□□□□ 0.39
PTCH1-215ENST00000547672 KRT28Q7Z3Y7 464 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms