RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ANKRD36BQ8N2N9 1353 aa19.01■□□□□ 0.63
PTCH1-213ENST00000546820 TTC21AQ8NDW8 1320 aa19■□□□□ 0.63
PTCH1-213ENST00000546820 TTC21BQ7Z4L5 1316 aa19■□□□□ 0.63
PTCH1-213ENST00000546820 A0A1W2PP64 1363 aa18.99■□□□□ 0.63
PTCH1-213ENST00000546820 NUTM2BA6NNL0 878 aaPredicted RBP18.99■□□□□ 0.63
PTCH1-213ENST00000546820 NUTM2EB1AL46 878 aaPredicted RBP18.99■□□□□ 0.63
PTCH1-213ENST00000546820 HAP1P54257 671 aaPredicted RBP18.99■□□□□ 0.63
PTCH1-213ENST00000546820 NLRP13Q86W25 1043 aa18.99■□□□□ 0.63
PTCH1-213ENST00000546820 NUTM2AQ8IVF1 878 aaPredicted RBP18.99■□□□□ 0.63
PTCH1-213ENST00000546820 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.98■□□□□ 0.63
PTCH1-213ENST00000546820 CD163L1Q9NR16 1453 aa18.97■□□□□ 0.63
PTCH1-213ENST00000546820 CCDC7Q96M83 1385 aa18.97■□□□□ 0.63
PTCH1-213ENST00000546820 AKAP12Q02952 1782 aa18.97■□□□□ 0.63
PTCH1-213ENST00000546820 NLRP6P59044 892 aa18.97■□□□□ 0.63
PTCH1-213ENST00000546820 SHPRHQ149N8 1683 aa18.97■□□□□ 0.63
PTCH1-213ENST00000546820 EDC4Q6P2E9 1401 aaKnown RBP18.97■□□□□ 0.63
PTCH1-213ENST00000546820 WASHC2AQ641Q2 1341 aa18.97■□□□□ 0.63
PTCH1-213ENST00000546820 PANK3Q9H999 370 aa18.96■□□□□ 0.63
PTCH1-213ENST00000546820 SSH2Q76I76 1423 aa18.96■□□□□ 0.63
PTCH1-213ENST00000546820 TRPM3Q9HCF6 1732 aaPredicted RBP18.96■□□□□ 0.63
PTCH1-213ENST00000546820 PLEKHG5O94827 1062 aa18.95■□□□□ 0.62
PTCH1-213ENST00000546820 MEX3CQ5U5Q3 659 aaKnown RBP18.95■□□□□ 0.62
PTCH1-213ENST00000546820 NUTM2GQ5VZR2 741 aa18.95■□□□□ 0.62
PTCH1-213ENST00000546820 CABLES1Q8TDN4 633 aa18.93■□□□□ 0.62
PTCH1-213ENST00000546820 CARD14Q9BXL6 1004 aa18.93■□□□□ 0.62
PTCH1-213ENST00000546820 ALS2Q96Q42 1657 aa18.92■□□□□ 0.62
PTCH1-213ENST00000546820 MON2Q7Z3U7 1717 aa18.92■□□□□ 0.62
PTCH1-213ENST00000546820 ADAMTS2O95450 1211 aa18.91■□□□□ 0.62
PTCH1-213ENST00000546820 KNSTRNQ9Y448 316 aa18.91■□□□□ 0.62
PTCH1-213ENST00000546820 COL22A1Q8NFW1 1626 aaPredicted RBP18.91■□□□□ 0.62
PTCH1-213ENST00000546820 MYOM1P52179 1685 aa18.9■□□□□ 0.62
PTCH1-213ENST00000546820 NME9Q86XW9 330 aa18.9■□□□□ 0.62
PTCH1-213ENST00000546820 KCNH5Q8NCM2 988 aa18.9■□□□□ 0.62
PTCH1-213ENST00000546820 CGNL1Q0VF96 1302 aa18.9■□□□□ 0.62
PTCH1-213ENST00000546820 GCP02774 474 aa18.89■□□□□ 0.61
PTCH1-213ENST00000546820 COG3Q96JB2 828 aa18.89■□□□□ 0.61
PTCH1-213ENST00000546820 FYB1O15117 783 aa18.88■□□□□ 0.61
PTCH1-213ENST00000546820 NGLY1Q96IV0 654 aa18.88■□□□□ 0.61
PTCH1-213ENST00000546820 USP31Q70CQ4 1352 aa18.88■□□□□ 0.61
PTCH1-213ENST00000546820 NSD3Q9BZ95 1437 aa18.88■□□□□ 0.61
PTCH1-213ENST00000546820 USP19O94966 1318 aa18.87■□□□□ 0.61
PTCH1-213ENST00000546820 MED1Q15648 1581 aaPredicted RBP18.86■□□□□ 0.61
PTCH1-213ENST00000546820 NRKQ7Z2Y5 1582 aa18.86■□□□□ 0.61
PTCH1-213ENST00000546820 ZNF316A6NFI3 1004 aaPredicted RBP18.86■□□□□ 0.61
PTCH1-213ENST00000546820 ZRANB1Q9UGI0 708 aa18.86■□□□□ 0.61
PTCH1-213ENST00000546820 C8orf37Q96NL8 207 aa18.85■□□□□ 0.61
PTCH1-213ENST00000546820 PHF23Q9BUL5 403 aaPredicted RBP18.85■□□□□ 0.61
PTCH1-213ENST00000546820 GGNBP2Q9H3C7 697 aa18.85■□□□□ 0.61
PTCH1-213ENST00000546820 ZC3H6P61129 1189 aaKnown RBP18.84■□□□□ 0.61
PTCH1-213ENST00000546820 PIK3C2AO00443 1686 aa18.83■□□□□ 0.61
PTCH1-213ENST00000546820 LRP6O75581 1613 aa18.83■□□□□ 0.61
PTCH1-213ENST00000546820 PRDM11Q9NQV5 511 aa18.83■□□□□ 0.6
PTCH1-213ENST00000546820 FAM83GA6ND36 823 aa18.82■□□□□ 0.6
PTCH1-213ENST00000546820 SOX12O15370 315 aa18.82■□□□□ 0.6
PTCH1-213ENST00000546820 PER1O15534 1290 aaPredicted RBP18.82■□□□□ 0.6
PTCH1-213ENST00000546820 ZNF772Q68DY9 489 aaPredicted RBP18.8■□□□□ 0.6
PTCH1-213ENST00000546820 CPDO75976 1380 aa18.8■□□□□ 0.6
PTCH1-213ENST00000546820 NSD2O96028 1365 aa18.8■□□□□ 0.6
PTCH1-213ENST00000546820 ZBTB7CA1YPR0 619 aa18.79■□□□□ 0.6
PTCH1-213ENST00000546820 DDX10Q13206 875 aaKnown RBP18.79■□□□□ 0.6
PTCH1-213ENST00000546820 FNBP4Q8N3X1 1017 aaPredicted RBP18.79■□□□□ 0.6
PTCH1-213ENST00000546820 OVOS2A0A0J9YW53 1432 aa18.79■□□□□ 0.6
PTCH1-213ENST00000546820 OVOS2Q6IE36 1432 aa18.79■□□□□ 0.6
PTCH1-213ENST00000546820 KIAA0232Q92628 1395 aa18.79■□□□□ 0.6
PTCH1-213ENST00000546820 AFF2P51816 1311 aa18.78■□□□□ 0.6
PTCH1-213ENST00000546820 MORC1Q86VD1 984 aa18.78■□□□□ 0.6
PTCH1-213ENST00000546820 SLIT3O75094 1523 aa18.78■□□□□ 0.6
PTCH1-213ENST00000546820 CHRNA2Q15822 529 aa18.77■□□□□ 0.6
PTCH1-213ENST00000546820 AMER1Q5JTC6 1135 aaPredicted RBP18.77■□□□□ 0.6
PTCH1-213ENST00000546820 ARHGEF25Q86VW2 580 aa18.77■□□□□ 0.6
PTCH1-213ENST00000546820 USP21Q9UK80 565 aa18.77■□□□□ 0.6
PTCH1-213ENST00000546820 PHRF1Q9P1Y6 1649 aaKnown RBP18.77■□□□□ 0.6
PTCH1-213ENST00000546820 ABCA3Q99758 1704 aa18.77■□□□□ 0.59
PTCH1-213ENST00000546820 CRYBG1Q9Y4K1 1723 aa18.77■□□□□ 0.59
PTCH1-213ENST00000546820 EVA1CP58658 441 aa18.76■□□□□ 0.59
PTCH1-213ENST00000546820 MARF1Q9Y4F3 1742 aaKnown RBP18.76■□□□□ 0.59
PTCH1-213ENST00000546820 KIF20BQ96Q89 1820 aa18.76■□□□□ 0.59
PTCH1-213ENST00000546820 USP54Q70EL1 1684 aa18.76■□□□□ 0.59
PTCH1-213ENST00000546820 UNC5CLQ8IV45 518 aa18.75■□□□□ 0.59
PTCH1-213ENST00000546820 BTG4Q9NY30 223 aa18.75■□□□□ 0.59
PTCH1-213ENST00000546820 AATKQ6ZMQ8 1374 aa18.74■□□□□ 0.59
PTCH1-213ENST00000546820 NPC1L1Q9UHC9 1359 aa18.73■□□□□ 0.59
PTCH1-213ENST00000546820 AMPHP49418 695 aa18.73■□□□□ 0.59
PTCH1-213ENST00000546820 CC2D1BQ5T0F9 858 aaKnown RBP18.73■□□□□ 0.59
PTCH1-213ENST00000546820 QTRT2Q9H974 415 aaKnown RBP18.73■□□□□ 0.59
PTCH1-213ENST00000546820 COL14A1Q05707 1796 aaKnown RBP18.73■□□□□ 0.59
PTCH1-213ENST00000546820 TNNT2P45379 298 aaPredicted RBP18.72■□□□□ 0.59
PTCH1-213ENST00000546820 TRPC5Q9UL62 973 aaPredicted RBP18.72■□□□□ 0.59
PTCH1-213ENST00000546820 FBLN1P23142 703 aa18.71■□□□□ 0.59
PTCH1-213ENST00000546820 CNGB1Q14028 1251 aaPredicted RBP18.71■□□□□ 0.59
PTCH1-213ENST00000546820 SLIT2O94813 1529 aa18.7■□□□□ 0.58
PTCH1-213ENST00000546820 NFAT5O94916 1531 aa18.7■□□□□ 0.58
PTCH1-213ENST00000546820 IP6K1Q92551 441 aa18.7■□□□□ 0.58
PTCH1-213ENST00000546820 STRN4Q9NRL3 753 aa18.7■□□□□ 0.58
PTCH1-213ENST00000546820 RGS17Q9UGC6 210 aaPredicted RBP18.7■□□□□ 0.58
PTCH1-213ENST00000546820 MAP3K19Q56UN5 1328 aa18.7■□□□□ 0.58
PTCH1-213ENST00000546820 RRS1Q15050 365 aaKnown RBP18.69■□□□□ 0.58
PTCH1-213ENST00000546820 CCDC9Q9Y3X0 531 aaKnown RBP18.69■□□□□ 0.58
PTCH1-213ENST00000546820 PPM1GO15355 546 aaPredicted RBP18.68■□□□□ 0.58
PTCH1-213ENST00000546820 VPS72Q15906 364 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms