RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 NUTM2FA1L443 756 aa18.45■□□□□ 0.54
HOXC11-202ENST00000546378 CFAP53Q96M91 514 aa18.45■□□□□ 0.54
HOXC11-202ENST00000546378 DTNBO60941 627 aa18.45■□□□□ 0.54
HOXC11-202ENST00000546378 WAPLQ7Z5K2 1190 aa18.45■□□□□ 0.54
HOXC11-202ENST00000546378 NOB1Q9ULX3 412 aaKnown RBP18.45■□□□□ 0.54
HOXC11-202ENST00000546378 TRPM1Q7Z4N2 1603 aa18.44■□□□□ 0.54
HOXC11-202ENST00000546378 SLC26A8Q96RN1 970 aa18.43■□□□□ 0.54
HOXC11-202ENST00000546378 LMTK2Q8IWU2 1503 aa18.43■□□□□ 0.54
HOXC11-202ENST00000546378 HSP90AA2PQ14568 343 aaPredicted RBP18.43■□□□□ 0.54
HOXC11-202ENST00000546378 ZKSCAN2Q63HK3 967 aa18.43■□□□□ 0.54
HOXC11-202ENST00000546378 NKTRP30414 1462 aaKnown RBP18.41■□□□□ 0.54
HOXC11-202ENST00000546378 TXNDC2Q86VQ3 553 aa18.41■□□□□ 0.54
HOXC11-202ENST00000546378 PPP6R1Q9UPN7 881 aa18.41■□□□□ 0.54
HOXC11-202ENST00000546378 TMEM57Q8N5G2 664 aa18.41■□□□□ 0.54
HOXC11-202ENST00000546378 RUNDC1Q96C34 613 aa18.41■□□□□ 0.54
HOXC11-202ENST00000546378 SSH1Q8WYL5 1049 aa18.41■□□□□ 0.54
HOXC11-202ENST00000546378 BCL11BQ9C0K0 894 aaPredicted RBP18.41■□□□□ 0.54
HOXC11-202ENST00000546378 TBC1D32Q96NH3 1257 aa18.4■□□□□ 0.54
HOXC11-202ENST00000546378 KIF13AQ9H1H9 1805 aa18.39■□□□□ 0.54
HOXC11-202ENST00000546378 RIPK4P57078 832 aa18.39■□□□□ 0.53
HOXC11-202ENST00000546378 ZNF428Q96B54 188 aa18.39■□□□□ 0.53
HOXC11-202ENST00000546378 TRIM27P14373 513 aa18.38■□□□□ 0.53
HOXC11-202ENST00000546378 PDE3AQ14432 1141 aa18.38■□□□□ 0.53
HOXC11-202ENST00000546378 CAMSAP1Q5T5Y3 1602 aa18.38■□□□□ 0.53
HOXC11-202ENST00000546378 KIF1BO60333 1816 aa18.38■□□□□ 0.53
HOXC11-202ENST00000546378 PLCB2Q00722 1185 aa18.38■□□□□ 0.53
HOXC11-202ENST00000546378 MADDQ8WXG6 1647 aa18.37■□□□□ 0.53
HOXC11-202ENST00000546378 CHMP5Q9NZZ3 219 aa18.37■□□□□ 0.53
HOXC11-202ENST00000546378 BLMP54132 1417 aaPredicted RBP18.37■□□□□ 0.53
HOXC11-202ENST00000546378 ARHGAP31Q2M1Z3 1444 aa18.37■□□□□ 0.53
HOXC11-202ENST00000546378 ERVK-7P63135 1459 aa18.36■□□□□ 0.53
HOXC11-202ENST00000546378 UBE2Q2Q8WVN8 375 aa18.36■□□□□ 0.53
HOXC11-202ENST00000546378 ZMYM4Q5VZL5 1548 aa18.36■□□□□ 0.53
HOXC11-202ENST00000546378 TNRQ92752 1358 aa18.36■□□□□ 0.53
HOXC11-202ENST00000546378 ZNF521Q96K83 1311 aa18.36■□□□□ 0.53
HOXC11-202ENST00000546378 MVPQ14764 893 aaKnown RBP18.36■□□□□ 0.53
HOXC11-202ENST00000546378 RNF214Q8ND24 703 aa18.36■□□□□ 0.53
HOXC11-202ENST00000546378 DDX49Q9Y6V7 483 aaKnown RBP18.36■□□□□ 0.53
HOXC11-202ENST00000546378 SYNMO15061 1565 aa18.35■□□□□ 0.53
HOXC11-202ENST00000546378 GRPEL1Q9HAV7 217 aa18.35■□□□□ 0.53
HOXC11-202ENST00000546378 EVC2Q86UK5 1308 aa18.35■□□□□ 0.53
HOXC11-202ENST00000546378 NSD3Q9BZ95 1437 aa18.35■□□□□ 0.53
HOXC11-202ENST00000546378 MROH2AA6NES4 1674 aa18.35■□□□□ 0.53
HOXC11-202ENST00000546378 HDGFP51858 240 aaKnown RBP18.34■□□□□ 0.53
HOXC11-202ENST00000546378 ATAD2Q6PL18 1390 aa18.34■□□□□ 0.53
HOXC11-202ENST00000546378 SIGLEC1Q9BZZ2 1709 aa18.34■□□□□ 0.53
HOXC11-202ENST00000546378 ADGRB3O60242 1522 aa18.34■□□□□ 0.53
HOXC11-202ENST00000546378 CD2BP2O95400 341 aaKnown RBP18.34■□□□□ 0.53
HOXC11-202ENST00000546378 SSFA2P28290 1259 aa18.34■□□□□ 0.53
HOXC11-202ENST00000546378 PIK3C2GO75747 1445 aa18.34■□□□□ 0.53
HOXC11-202ENST00000546378 ANP32BQ92688 251 aaKnown RBP18.33■□□□□ 0.53
HOXC11-202ENST00000546378 TNPO1Q92973 898 aaKnown RBP18.33■□□□□ 0.53
HOXC11-202ENST00000546378 DCTN1Q14203 1278 aa18.33■□□□□ 0.52
HOXC11-202ENST00000546378 MCTP1Q6DN14 999 aa18.33■□□□□ 0.52
HOXC11-202ENST00000546378 GAS2L3Q86XJ1 694 aa18.33■□□□□ 0.52
HOXC11-202ENST00000546378 FAM13BQ9NYF5 915 aa18.33■□□□□ 0.52
HOXC11-202ENST00000546378 RIMS2Q9UQ26 1411 aa18.33■□□□□ 0.52
HOXC11-202ENST00000546378 EID1Q9Y6B2 187 aa18.33■□□□□ 0.52
HOXC11-202ENST00000546378 MYOM2P54296 1465 aa18.31■□□□□ 0.52
HOXC11-202ENST00000546378 LTKP29376 864 aa18.31■□□□□ 0.52
HOXC11-202ENST00000546378 NECTIN2Q92692 538 aa18.31■□□□□ 0.52
HOXC11-202ENST00000546378 CLTCQ00610 1675 aaKnown RBP18.31■□□□□ 0.52
HOXC11-202ENST00000546378 ANTXR1Q9H6X2 564 aa18.31■□□□□ 0.52
HOXC11-202ENST00000546378 RBM33Q96EV2 1170 aaKnown RBP18.3■□□□□ 0.52
HOXC11-202ENST00000546378 CAVIN1Q6NZI2 390 aaKnown RBP18.3■□□□□ 0.52
HOXC11-202ENST00000546378 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.3■□□□□ 0.52
HOXC11-202ENST00000546378 CDK19Q9BWU1 502 aa18.3■□□□□ 0.52
HOXC11-202ENST00000546378 GLIPR1L2Q4G1C9 344 aa18.29■□□□□ 0.52
HOXC11-202ENST00000546378 ESPNB1AK53 854 aa18.29■□□□□ 0.52
HOXC11-202ENST00000546378 TSHZ3Q63HK5 1081 aa18.29■□□□□ 0.52
HOXC11-202ENST00000546378 ERBB4Q15303 1308 aa18.29■□□□□ 0.52
HOXC11-202ENST00000546378 C16orf71Q8IYS4 520 aaPredicted RBP18.28■□□□□ 0.52
HOXC11-202ENST00000546378 CABP1Q9NZU7 370 aa18.28■□□□□ 0.52
HOXC11-202ENST00000546378 SMARCA5O60264 1052 aaPredicted RBP18.27■□□□□ 0.52
HOXC11-202ENST00000546378 NCKAP5LQ9HCH0 1330 aa18.27■□□□□ 0.52
HOXC11-202ENST00000546378 ARHGEF40Q8TER5 1519 aa18.27■□□□□ 0.52
HOXC11-202ENST00000546378 SLC4A10Q6U841 1118 aa18.27■□□□□ 0.52
HOXC11-202ENST00000546378 ZMYND15Q9H091 742 aa18.27■□□□□ 0.52
HOXC11-202ENST00000546378 PKNOX2Q96KN3 472 aa18.27■□□□□ 0.51
HOXC11-202ENST00000546378 RBM27Q9P2N5 1060 aaKnown RBP18.26■□□□□ 0.51
HOXC11-202ENST00000546378 AGLP35573 1532 aa18.26■□□□□ 0.51
HOXC11-202ENST00000546378 ATF7IPQ6VMQ6 1270 aa18.26■□□□□ 0.51
HOXC11-202ENST00000546378 R3HCC1Q9Y3T6 440 aaKnown RBP18.25■□□□□ 0.51
HOXC11-202ENST00000546378 FAM83GA6ND36 823 aa18.25■□□□□ 0.51
HOXC11-202ENST00000546378 DNTTIP2Q5QJE6 756 aaKnown RBP18.25■□□□□ 0.51
HOXC11-202ENST00000546378 A2ML1A8K2U0 1454 aa18.24■□□□□ 0.51
HOXC11-202ENST00000546378 PKP1Q13835 747 aa18.24■□□□□ 0.51
HOXC11-202ENST00000546378 TSPYL6Q8N831 410 aa18.24■□□□□ 0.51
HOXC11-202ENST00000546378 LARP6Q9BRS8 491 aaKnown RBP18.24■□□□□ 0.51
HOXC11-202ENST00000546378 PIK3C2BO00750 1634 aa18.24■□□□□ 0.51
HOXC11-202ENST00000546378 MSNP26038 577 aaKnown RBP18.24■□□□□ 0.51
HOXC11-202ENST00000546378 PRKAR2BP31323 418 aa18.24■□□□□ 0.51
HOXC11-202ENST00000546378 MRE11P49959 708 aa18.24■□□□□ 0.51
HOXC11-202ENST00000546378 KRT24Q2M2I5 525 aa18.24■□□□□ 0.51
HOXC11-202ENST00000546378 TRMT2AQ8IZ69 625 aaKnown RBP18.24■□□□□ 0.51
HOXC11-202ENST00000546378 GBP4Q96PP9 640 aa18.24■□□□□ 0.51
HOXC11-202ENST00000546378 METP08581 1390 aa18.23■□□□□ 0.51
HOXC11-202ENST00000546378 YTHDC2Q9H6S0 1430 aaKnown RBP18.23■□□□□ 0.51
HOXC11-202ENST00000546378 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.23■□□□□ 0.51
HOXC11-202ENST00000546378 PTMAP06454 111 aaKnown RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms