RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 USP32Q8NFA0 1604 aa12.35□□□□□ -0.43
USP28-215ENST00000545608 ADGRB2O60241 1585 aa12.35□□□□□ -0.43
USP28-215ENST00000545608 VPS72Q15906 364 aa12.34□□□□□ -0.43
USP28-215ENST00000545608 GLI3P10071 1580 aa12.34□□□□□ -0.43
USP28-215ENST00000545608 GPRASP1Q5JY77 1395 aa12.33□□□□□ -0.44
USP28-215ENST00000545608 NGDNQ8NEJ9 315 aaKnown RBP12.33□□□□□ -0.44
USP28-215ENST00000545608 EIF3AQ14152 1382 aaKnown RBP12.32□□□□□ -0.44
USP28-215ENST00000545608 ONECUT3O60422 494 aaPredicted RBP12.32□□□□□ -0.44
USP28-215ENST00000545608 CCDC125Q86Z20 511 aa12.32□□□□□ -0.44
USP28-215ENST00000545608 SEPT12Q8IYM1 358 aa12.32□□□□□ -0.44
USP28-215ENST00000545608 NUDT16Q96DE0 195 aaKnown RBP12.32□□□□□ -0.44
USP28-215ENST00000545608 CCDC9Q9Y3X0 531 aaKnown RBP12.32□□□□□ -0.44
USP28-215ENST00000545608 TULP4Q9NRJ4 1543 aa12.32□□□□□ -0.44
USP28-215ENST00000545608 NBPF1Q3BBV0 1214 aa12.31□□□□□ -0.44
USP28-215ENST00000545608 CDK19Q9BWU1 502 aa12.31□□□□□ -0.44
USP28-215ENST00000545608 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.31□□□□□ -0.44
USP28-215ENST00000545608 PAK3O75914 559 aaPredicted RBP12.3□□□□□ -0.44
USP28-215ENST00000545608 BTG4Q9NY30 223 aa12.3□□□□□ -0.44
USP28-215ENST00000545608 MKRN4PQ13434 485 aaPredicted RBP12.29□□□□□ -0.44
USP28-215ENST00000545608 SPINK5Q9NQ38 1064 aaPredicted RBP12.29□□□□□ -0.44
USP28-215ENST00000545608 TRPM3Q9HCF6 1732 aaPredicted RBP12.28□□□□□ -0.44
USP28-215ENST00000545608 RNF39Q9H2S5 420 aa12.28□□□□□ -0.44
USP28-215ENST00000545608 ZRANB1Q9UGI0 708 aa12.28□□□□□ -0.44
USP28-215ENST00000545608 ATP7BP35670 1465 aa12.27□□□□□ -0.44
USP28-215ENST00000545608 CAPN15O75808 1086 aa12.27□□□□□ -0.45
USP28-215ENST00000545608 POLA2Q14181 598 aa12.27□□□□□ -0.45
USP28-215ENST00000545608 FAM98CQ17RN3 349 aaKnown RBP12.27□□□□□ -0.45
USP28-215ENST00000545608 KRT27Q7Z3Y8 459 aa12.27□□□□□ -0.45
USP28-215ENST00000545608 DEFB132Q7Z7B7 95 aa12.27□□□□□ -0.45
USP28-215ENST00000545608 CCDC61Q9Y6R9 512 aa12.27□□□□□ -0.45
USP28-215ENST00000545608 ABCA3Q99758 1704 aa12.27□□□□□ -0.45
USP28-215ENST00000545608 BLMP54132 1417 aaPredicted RBP12.27□□□□□ -0.45
USP28-215ENST00000545608 ALS2Q96Q42 1657 aa12.26□□□□□ -0.45
USP28-215ENST00000545608 NBPF8Q3BBV2 869 aa12.26□□□□□ -0.45
USP28-215ENST00000545608 NUTM2GQ5VZR2 741 aa12.26□□□□□ -0.45
USP28-215ENST00000545608 ACEP12821 1306 aa12.26□□□□□ -0.45
USP28-215ENST00000545608 PLCH1Q4KWH8 1693 aa12.26□□□□□ -0.45
USP28-215ENST00000545608 ARHGEF28Q8N1W1 1705 aaKnown RBP12.25□□□□□ -0.45
USP28-215ENST00000545608 A0A0G2JS52 829 aa12.25□□□□□ -0.45
USP28-215ENST00000545608 PLEKHG3A1L390 1219 aa12.25□□□□□ -0.45
USP28-215ENST00000545608 MYT1Q01538 1121 aa12.25□□□□□ -0.45
USP28-215ENST00000545608 PRDM11Q9NQV5 511 aa12.25□□□□□ -0.45
USP28-215ENST00000545608 NWD2Q9ULI1 1742 aa12.25□□□□□ -0.45
USP28-215ENST00000545608 POLR3AO14802 1390 aaPredicted RBP12.24□□□□□ -0.45
USP28-215ENST00000545608 ZC3H6P61129 1189 aaKnown RBP12.24□□□□□ -0.45
USP28-215ENST00000545608 CHRNA2Q15822 529 aa12.24□□□□□ -0.45
USP28-215ENST00000545608 SPATA31A5Q5VU36 1347 aa12.24□□□□□ -0.45
USP28-215ENST00000545608 SPATA31A7Q8IWB4 1347 aa12.24□□□□□ -0.45
USP28-215ENST00000545608 BRWD3Q6RI45 1802 aa12.23□□□□□ -0.45
USP28-215ENST00000545608 KIAA0232Q92628 1395 aa12.23□□□□□ -0.45
USP28-215ENST00000545608 SF3B2Q13435 895 aaKnown RBP12.23□□□□□ -0.45
USP28-215ENST00000545608 L3MBTL2Q969R5 705 aa12.23□□□□□ -0.45
USP28-215ENST00000545608 SIN3AQ96ST3 1273 aa12.23□□□□□ -0.45
USP28-215ENST00000545608 CABP2Q9NPB3 220 aa12.23□□□□□ -0.45
USP28-215ENST00000545608 CENPJQ9HC77 1338 aaPredicted RBP12.22□□□□□ -0.45
USP28-215ENST00000545608 SRPK2P78362 688 aaKnown RBP12.22□□□□□ -0.45
USP28-215ENST00000545608 C1QBPQ07021 282 aaKnown RBP12.22□□□□□ -0.45
USP28-215ENST00000545608 FAM182BQ5T319 152 aa12.22□□□□□ -0.45
USP28-215ENST00000545608 NRAPQ86VF7 1730 aa12.22□□□□□ -0.45
USP28-215ENST00000545608 COL14A1Q05707 1796 aaKnown RBP12.21□□□□□ -0.45
USP28-215ENST00000545608 ABTB2Q8N961 1025 aa12.21□□□□□ -0.45
USP28-215ENST00000545608 KIAA1210Q9ULL0 1709 aa12.2□□□□□ -0.46
USP28-215ENST00000545608 PROM2Q8N271 834 aa12.2□□□□□ -0.46
USP28-215ENST00000545608 STRN4Q9NRL3 753 aa12.2□□□□□ -0.46
USP28-215ENST00000545608 CRYBG1Q9Y4K1 1723 aa12.2□□□□□ -0.46
USP28-215ENST00000545608 SPATA31A1Q5TZJ5 1347 aa12.19□□□□□ -0.46
USP28-215ENST00000545608 NEUROD1Q13562 356 aa12.19□□□□□ -0.46
USP28-215ENST00000545608 CABP1Q9NZU7 370 aa12.19□□□□□ -0.46
USP28-215ENST00000545608 PPIP5K1Q6PFW1 1433 aa12.19□□□□□ -0.46
USP28-215ENST00000545608 ITSN1Q15811 1721 aa12.18□□□□□ -0.46
USP28-215ENST00000545608 BAG6P46379 1132 aa12.18□□□□□ -0.46
USP28-215ENST00000545608 EVA1CP58658 441 aa12.18□□□□□ -0.46
USP28-215ENST00000545608 ZBTB12Q9Y330 459 aaPredicted RBP12.18□□□□□ -0.46
USP28-215ENST00000545608 USP19O94966 1318 aa12.17□□□□□ -0.46
USP28-215ENST00000545608 TOPAZ1Q8N9V7 1692 aa12.17□□□□□ -0.46
USP28-215ENST00000545608 GCP02774 474 aa12.17□□□□□ -0.46
USP28-215ENST00000545608 EN1Q05925 392 aaPredicted RBP12.17□□□□□ -0.46
USP28-215ENST00000545608 NLRP13Q86W25 1043 aa12.17□□□□□ -0.46
USP28-215ENST00000545608 USP35Q9P2H5 1018 aa12.17□□□□□ -0.46
USP28-215ENST00000545608 LARP1Q6PKG0 1096 aaKnown RBP12.16□□□□□ -0.46
USP28-215ENST00000545608 SSH2Q76I76 1423 aa12.15□□□□□ -0.46
USP28-215ENST00000545608 CPDO75976 1380 aa12.15□□□□□ -0.46
USP28-215ENST00000545608 PHRF1Q9P1Y6 1649 aaKnown RBP12.15□□□□□ -0.47
USP28-215ENST00000545608 EP400Q96L91 3159 aa12.14□□□□□ -0.47
USP28-215ENST00000545608 THSD7AQ9UPZ6 1657 aa12.14□□□□□ -0.47
USP28-215ENST00000545608 CAMTA1Q9Y6Y1 1673 aa12.14□□□□□ -0.47
USP28-215ENST00000545608 PSDA5PKW4 1024 aaPredicted RBP12.14□□□□□ -0.47
USP28-215ENST00000545608 NLRP6P59044 892 aa12.14□□□□□ -0.47
USP28-215ENST00000545608 BARGINQ6ZT62 677 aa12.14□□□□□ -0.47
USP28-215ENST00000545608 EVC2Q86UK5 1308 aa12.13□□□□□ -0.47
USP28-215ENST00000545608 USP6P35125 1406 aa12.13□□□□□ -0.47
USP28-215ENST00000545608 TRIM37O94972 964 aa12.13□□□□□ -0.47
USP28-215ENST00000545608 VASPP50552 380 aaPredicted RBP12.13□□□□□ -0.47
USP28-215ENST00000545608 FAM196AQ6ZSG2 479 aa12.13□□□□□ -0.47
USP28-215ENST00000545608 TCP11L2Q8N4U5 519 aa12.13□□□□□ -0.47
USP28-215ENST00000545608 BRD4O60885 1362 aaPredicted RBP12.13□□□□□ -0.47
USP28-215ENST00000545608 NRKQ7Z2Y5 1582 aa12.13□□□□□ -0.47
USP28-215ENST00000545608 ZBTB7CA1YPR0 619 aa12.12□□□□□ -0.47
USP28-215ENST00000545608 EZH2Q15910 746 aaKnown RBP12.12□□□□□ -0.47
USP28-215ENST00000545608 ROCK2O75116 1388 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms