RNA–Protein interactions for RNA: ENST00000545046.5

CHFR-224, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 2,186 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-224ENST00000545046 WWC1Q8IX03 1113 aa21.8■■□□□ 1.08
CHFR-224ENST00000545046 COL3A1P02461 1466 aaPredicted RBP21.79■■□□□ 1.08
CHFR-224ENST00000545046 IQSEC2Q5JU85 1478 aa21.79■■□□□ 1.08
CHFR-224ENST00000545046 MAP2P11137 1827 aaKnown RBP21.78■■□□□ 1.08
CHFR-224ENST00000545046 PRR36Q9H6K5 1346 aa21.77■■□□□ 1.08
CHFR-224ENST00000545046 NCKAP5LQ9HCH0 1330 aa21.77■■□□□ 1.08
CHFR-224ENST00000545046 U2SURPO15042 1029 aaKnown RBP21.77■■□□□ 1.08
CHFR-224ENST00000545046 NEUROD2Q15784 382 aa21.77■■□□□ 1.08
CHFR-224ENST00000545046 NCBP3Q53F19 620 aaKnown RBP21.77■■□□□ 1.08
CHFR-224ENST00000545046 NKTRP30414 1462 aaKnown RBP21.77■■□□□ 1.08
CHFR-224ENST00000545046 DIAPH1O60610 1272 aaKnown RBP21.76■■□□□ 1.07
CHFR-224ENST00000545046 EXOC6Q8TAG9 804 aa21.76■■□□□ 1.07
CHFR-224ENST00000545046 SPINK5Q9NQ38 1064 aaPredicted RBP21.76■■□□□ 1.07
CHFR-224ENST00000545046 ADAMTSL3P82987 1691 aa21.76■■□□□ 1.07
CHFR-224ENST00000545046 PTCH1Q13635 1447 aa21.76■■□□□ 1.07
CHFR-224ENST00000545046 RRP7AQ9Y3A4 280 aaKnown RBP21.75■■□□□ 1.07
CHFR-224ENST00000545046 PNPLA6Q8IY17 1366 aa21.75■■□□□ 1.07
CHFR-224ENST00000545046 TOPAZ1Q8N9V7 1692 aa21.75■■□□□ 1.07
CHFR-224ENST00000545046 PLIN1O60240 522 aa21.75■■□□□ 1.07
CHFR-224ENST00000545046 CCDC27Q2M243 656 aa21.74■■□□□ 1.07
CHFR-224ENST00000545046 NME9Q86XW9 330 aa21.74■■□□□ 1.07
CHFR-224ENST00000545046 WDR63Q8IWG1 891 aa21.74■■□□□ 1.07
CHFR-224ENST00000545046 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.74■■□□□ 1.07
CHFR-224ENST00000545046 COG3Q96JB2 828 aa21.73■■□□□ 1.07
CHFR-224ENST00000545046 PNNQ9H307 717 aaKnown RBP21.73■■□□□ 1.07
CHFR-224ENST00000545046 PHF23Q9BUL5 403 aaPredicted RBP21.72■■□□□ 1.07
CHFR-224ENST00000545046 POLKQ9UBT6 870 aa21.72■■□□□ 1.07
CHFR-224ENST00000545046 DMRT2Q9Y5R5 561 aa21.72■■□□□ 1.07
CHFR-224ENST00000545046 SETD1BQ9UPS6 1966 aaKnown RBP21.72■■□□□ 1.07
CHFR-224ENST00000545046 ZNF142P52746 1687 aaPredicted RBP21.72■■□□□ 1.07
CHFR-224ENST00000545046 PLEKHG3A1L390 1219 aa21.71■■□□□ 1.07
CHFR-224ENST00000545046 XRN1Q8IZH2 1706 aaKnown RBP21.71■■□□□ 1.07
CHFR-224ENST00000545046 PPM1GO15355 546 aaPredicted RBP21.71■■□□□ 1.07
CHFR-224ENST00000545046 PIK3R4Q99570 1358 aa21.7■■□□□ 1.07
CHFR-224ENST00000545046 ANKLE2Q86XL3 938 aa21.7■■□□□ 1.06
CHFR-224ENST00000545046 MAPK8IP3Q9UPT6 1336 aa21.7■■□□□ 1.06
CHFR-224ENST00000545046 NUTM2FA1L443 756 aa21.7■■□□□ 1.06
CHFR-224ENST00000545046 ACEP12821 1306 aa21.69■■□□□ 1.06
CHFR-224ENST00000545046 PLEKHF1Q96S99 279 aa21.69■■□□□ 1.06
CHFR-224ENST00000545046 AATKQ6ZMQ8 1374 aa21.69■■□□□ 1.06
CHFR-224ENST00000545046 ZRANB1Q9UGI0 708 aa21.68■■□□□ 1.06
CHFR-224ENST00000545046 FBLN1P23142 703 aa21.67■■□□□ 1.06
CHFR-224ENST00000545046 NRKQ7Z2Y5 1582 aa21.66■■□□□ 1.06
CHFR-224ENST00000545046 CRBNQ96SW2 442 aa21.66■■□□□ 1.06
CHFR-224ENST00000545046 TTC21BQ7Z4L5 1316 aa21.66■■□□□ 1.06
CHFR-224ENST00000545046 FCHSD2O94868 740 aa21.65■■□□□ 1.06
CHFR-224ENST00000545046 EMILIN1Q9Y6C2 1016 aa21.65■■□□□ 1.06
CHFR-224ENST00000545046 TMPOP42166 694 aaKnown RBP21.64■■□□□ 1.06
CHFR-224ENST00000545046 RGPD8O14715 1765 aaPredicted RBP21.64■■□□□ 1.05
CHFR-224ENST00000545046 CDK12Q9NYV4 1490 aaPredicted RBP21.64■■□□□ 1.05
CHFR-224ENST00000545046 MYH16Q9H6N6 1097 aa21.64■■□□□ 1.05
CHFR-224ENST00000545046 USP6P35125 1406 aa21.64■■□□□ 1.05
CHFR-224ENST00000545046 NEFMP07197 916 aa21.63■■□□□ 1.05
CHFR-224ENST00000545046 KCNA6P17658 529 aa21.63■■□□□ 1.05
CHFR-224ENST00000545046 CHD2O14647 1828 aaKnown RBP21.63■■□□□ 1.05
CHFR-224ENST00000545046 C20orf194Q5TEA3 1177 aa21.62■■□□□ 1.05
CHFR-224ENST00000545046 RBM19Q9Y4C8 960 aaKnown RBP21.6■■□□□ 1.05
CHFR-224ENST00000545046 BCAR3O75815 825 aa21.6■■□□□ 1.05
CHFR-224ENST00000545046 NGDNQ8NEJ9 315 aaKnown RBP21.59■■□□□ 1.05
CHFR-224ENST00000545046 PMFBP1Q8TBY8 1022 aa21.59■■□□□ 1.05
CHFR-224ENST00000545046 LRRC7Q96NW7 1537 aa21.59■■□□□ 1.05
CHFR-224ENST00000545046 IL13P35225 146 aa21.58■■□□□ 1.05
CHFR-224ENST00000545046 RIPK4P57078 832 aa21.58■■□□□ 1.05
CHFR-224ENST00000545046 RRS1Q15050 365 aaKnown RBP21.58■■□□□ 1.05
CHFR-224ENST00000545046 RSPH6AQ9H0K4 717 aa21.58■■□□□ 1.05
CHFR-224ENST00000545046 ANKARQ7Z5J8 1434 aa21.58■■□□□ 1.05
CHFR-224ENST00000545046 TTC21AQ8NDW8 1320 aa21.58■■□□□ 1.05
CHFR-224ENST00000545046 TRIM35Q9UPQ4 493 aa21.58■■□□□ 1.04
CHFR-224ENST00000545046 FMN2Q9NZ56 1722 aa21.57■■□□□ 1.04
CHFR-224ENST00000545046 PRKAR2BP31323 418 aa21.57■■□□□ 1.04
CHFR-224ENST00000545046 OVOS2A0A0J9YW53 1432 aa21.57■■□□□ 1.04
CHFR-224ENST00000545046 OVOS2Q6IE36 1432 aa21.57■■□□□ 1.04
CHFR-224ENST00000545046 NALCNQ8IZF0 1738 aa21.56■■□□□ 1.04
CHFR-224ENST00000545046 SSH2Q76I76 1423 aa21.56■■□□□ 1.04
CHFR-224ENST00000545046 IL16Q14005 1332 aa21.55■■□□□ 1.04
CHFR-224ENST00000545046 HMOX1P09601 288 aa21.54■■□□□ 1.04
CHFR-224ENST00000545046 CANXP27824 592 aaKnown RBP21.53■■□□□ 1.04
CHFR-224ENST00000545046 RARSP54136 660 aaKnown RBP21.53■■□□□ 1.04
CHFR-224ENST00000545046 CT47B1P0C2W7 299 aaPredicted RBP21.52■■□□□ 1.04
CHFR-224ENST00000545046 PDE3AQ14432 1141 aa21.52■■□□□ 1.04
CHFR-224ENST00000545046 NPHP4O75161 1426 aaPredicted RBP21.52■■□□□ 1.03
CHFR-224ENST00000545046 USP31Q70CQ4 1352 aa21.51■■□□□ 1.03
CHFR-224ENST00000545046 FANCIQ9NVI1 1328 aa21.5■■□□□ 1.03
CHFR-224ENST00000545046 NFE2L2Q16236 605 aa21.5■■□□□ 1.03
CHFR-224ENST00000545046 TSR2Q969E8 191 aaKnown RBP21.48■■□□□ 1.03
CHFR-224ENST00000545046 PHACTR3Q96KR7 559 aa21.48■■□□□ 1.03
CHFR-224ENST00000545046 FRAT1Q92837 279 aaPredicted RBP21.48■■□□□ 1.03
CHFR-224ENST00000545046 CALD1Q05682 793 aaKnown RBP21.46■■□□□ 1.03
CHFR-224ENST00000545046 EXOSC9Q06265 439 aaKnown RBP21.46■■□□□ 1.03
CHFR-224ENST00000545046 EIF4A2Q14240 407 aaKnown RBP21.46■■□□□ 1.03
CHFR-224ENST00000545046 PIK3C2AO00443 1686 aa21.46■■□□□ 1.03
CHFR-224ENST00000545046 PEAK1Q9H792 1746 aa21.45■■□□□ 1.02
CHFR-224ENST00000545046 DLG5Q8TDM6 1919 aa21.45■■□□□ 1.02
CHFR-224ENST00000545046 SOX12O15370 315 aa21.44■■□□□ 1.02
CHFR-224ENST00000545046 LMOD3Q0VAK6 560 aa21.44■■□□□ 1.02
CHFR-224ENST00000545046 ADGRL3Q9HAR2 1447 aa21.43■■□□□ 1.02
CHFR-224ENST00000545046 NLRP6P59044 892 aa21.43■■□□□ 1.02
CHFR-224ENST00000545046 PHF8Q9UPP1 1060 aa21.43■■□□□ 1.02
CHFR-224ENST00000545046 TCERG1O14776 1098 aaKnown RBP21.42■■□□□ 1.02
CHFR-224ENST00000545046 HSP90AB2PQ58FF8 381 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms