RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ATAD2Q6PL18 1390 aa17.43■□□□□ 0.38
VPS33A-208ENST00000543633 TNNT2P45379 298 aaPredicted RBP17.43■□□□□ 0.38
VPS33A-208ENST00000543633 KIF20BQ96Q89 1820 aa17.42■□□□□ 0.38
VPS33A-208ENST00000543633 U2AF1L5P0DN76 240 aaPredicted RBP17.42■□□□□ 0.38
VPS33A-208ENST00000543633 U2AF1Q01081 240 aaKnown RBP eCLIP17.42■□□□□ 0.38
VPS33A-208ENST00000543633 L1TD1Q5T7N2 865 aaKnown RBP17.42■□□□□ 0.38
VPS33A-208ENST00000543633 FTSJ3Q8IY81 847 aaKnown RBP17.42■□□□□ 0.38
VPS33A-208ENST00000543633 FAM43AQ8N2R8 423 aa17.42■□□□□ 0.38
VPS33A-208ENST00000543633 RTN4Q9NQC3 1192 aaKnown RBP17.42■□□□□ 0.38
VPS33A-208ENST00000543633 DDX19BQ9UMR2 479 aa17.42■□□□□ 0.38
VPS33A-208ENST00000543633 A0A1W2PP64 1363 aa17.4■□□□□ 0.38
VPS33A-208ENST00000543633 MLECQ14165 292 aa17.4■□□□□ 0.38
VPS33A-208ENST00000543633 TMEM132EQ6IEE7 984 aa17.4■□□□□ 0.38
VPS33A-208ENST00000543633 PLEKHF1Q96S99 279 aa17.4■□□□□ 0.38
VPS33A-208ENST00000543633 TBC1D2Q9BYX2 928 aa17.4■□□□□ 0.38
VPS33A-208ENST00000543633 TNNQ9UQP3 1299 aa17.4■□□□□ 0.38
VPS33A-208ENST00000543633 PNNQ9H307 717 aaKnown RBP17.4■□□□□ 0.38
VPS33A-208ENST00000543633 PTPRMP28827 1452 aa17.39■□□□□ 0.38
VPS33A-208ENST00000543633 KIF16BQ96L93 1317 aa17.39■□□□□ 0.37
VPS33A-208ENST00000543633 BCL2L13Q9BXK5 485 aa17.38■□□□□ 0.37
VPS33A-208ENST00000543633 TMPOP42166 694 aaKnown RBP17.38■□□□□ 0.37
VPS33A-208ENST00000543633 FBXO31Q5XUX0 539 aaPredicted RBP17.38■□□□□ 0.37
VPS33A-208ENST00000543633 SMC4Q9NTJ3 1288 aa17.38■□□□□ 0.37
VPS33A-208ENST00000543633 SMC5Q8IY18 1101 aa17.37■□□□□ 0.37
VPS33A-208ENST00000543633 TMEM131LA2VDJ0 1609 aa17.37■□□□□ 0.37
VPS33A-208ENST00000543633 PNPLA6Q8IY17 1366 aa17.37■□□□□ 0.37
VPS33A-208ENST00000543633 PPIP5K1Q6PFW1 1433 aa17.37■□□□□ 0.37
VPS33A-208ENST00000543633 SPATA31D1Q6ZQQ2 1576 aa17.37■□□□□ 0.37
VPS33A-208ENST00000543633 IDI1Q13907 227 aa17.37■□□□□ 0.37
VPS33A-208ENST00000543633 ATF7IPQ6VMQ6 1270 aa17.37■□□□□ 0.37
VPS33A-208ENST00000543633 SLKQ9H2G2 1235 aaPredicted RBP17.37■□□□□ 0.37
VPS33A-208ENST00000543633 SLC52A1Q9NWF4 448 aa17.37■□□□□ 0.37
VPS33A-208ENST00000543633 ZNF428Q96B54 188 aa17.36■□□□□ 0.37
VPS33A-208ENST00000543633 POGKQ9P215 609 aa17.36■□□□□ 0.37
VPS33A-208ENST00000543633 MYO5BQ9ULV0 1848 aa17.36■□□□□ 0.37
VPS33A-208ENST00000543633 CD163L1Q9NR16 1453 aa17.36■□□□□ 0.37
VPS33A-208ENST00000543633 TRIM27P14373 513 aa17.35■□□□□ 0.37
VPS33A-208ENST00000543633 ALDH1L2Q3SY69 923 aa17.35■□□□□ 0.37
VPS33A-208ENST00000543633 TRIM35Q9UPQ4 493 aa17.35■□□□□ 0.37
VPS33A-208ENST00000543633 EXOSC9Q06265 439 aaKnown RBP17.35■□□□□ 0.37
VPS33A-208ENST00000543633 ANO8Q9HCE9 1232 aaPredicted RBP17.35■□□□□ 0.37
VPS33A-208ENST00000543633 TERF2IPQ9NYB0 399 aa17.35■□□□□ 0.37
VPS33A-208ENST00000543633 IPO8O15397 1037 aaKnown RBP17.34■□□□□ 0.37
VPS33A-208ENST00000543633 BRPF1P55201 1214 aaPredicted RBP17.34■□□□□ 0.37
VPS33A-208ENST00000543633 C22orf23Q9BZE7 217 aa17.34■□□□□ 0.37
VPS33A-208ENST00000543633 CHMP5Q9NZZ3 219 aa17.34■□□□□ 0.37
VPS33A-208ENST00000543633 NCOA3Q9Y6Q9 1424 aa17.34■□□□□ 0.37
VPS33A-208ENST00000543633 SSH1Q8WYL5 1049 aa17.33■□□□□ 0.36
VPS33A-208ENST00000543633 LRRC7Q96NW7 1537 aa17.32■□□□□ 0.36
VPS33A-208ENST00000543633 CABP2Q9NPB3 220 aa17.32■□□□□ 0.36
VPS33A-208ENST00000543633 TSR2Q969E8 191 aaKnown RBP17.31■□□□□ 0.36
VPS33A-208ENST00000543633 CHMP4BQ9H444 224 aaKnown RBP17.31■□□□□ 0.36
VPS33A-208ENST00000543633 ZBTB40Q9NUA8 1239 aa17.31■□□□□ 0.36
VPS33A-208ENST00000543633 MCM4P33991 863 aa17.31■□□□□ 0.36
VPS33A-208ENST00000543633 ITPRIPQ8IWB1 547 aa17.31■□□□□ 0.36
VPS33A-208ENST00000543633 DLC1Q96QB1 1528 aa17.31■□□□□ 0.36
VPS33A-208ENST00000543633 FAM135BQ49AJ0 1406 aa17.3■□□□□ 0.36
VPS33A-208ENST00000543633 YTHDC2Q9H6S0 1430 aaKnown RBP17.3■□□□□ 0.36
VPS33A-208ENST00000543633 PIK3R4Q99570 1358 aa17.29■□□□□ 0.36
VPS33A-208ENST00000543633 ATP7BP35670 1465 aa17.29■□□□□ 0.36
VPS33A-208ENST00000543633 U2SURPO15042 1029 aaKnown RBP17.29■□□□□ 0.36
VPS33A-208ENST00000543633 RBM25P49756 843 aaKnown RBP17.29■□□□□ 0.36
VPS33A-208ENST00000543633 ESF1Q9H501 851 aaKnown RBP17.29■□□□□ 0.36
VPS33A-208ENST00000543633 FSD2A1L4K1 749 aa17.28■□□□□ 0.36
VPS33A-208ENST00000543633 DIAPH1O60610 1272 aaKnown RBP17.28■□□□□ 0.36
VPS33A-208ENST00000543633 SNX21Q969T3 373 aa17.28■□□□□ 0.36
VPS33A-208ENST00000543633 ISY1Q9ULR0 285 aaKnown RBP17.28■□□□□ 0.36
VPS33A-208ENST00000543633 PTCH1Q13635 1447 aa17.28■□□□□ 0.36
VPS33A-208ENST00000543633 FYB1O15117 783 aa17.28■□□□□ 0.36
VPS33A-208ENST00000543633 SRPK2P78362 688 aaKnown RBP17.28■□□□□ 0.36
VPS33A-208ENST00000543633 NUCB1Q02818 461 aa17.28■□□□□ 0.36
VPS33A-208ENST00000543633 HSCBQ8IWL3 235 aa17.28■□□□□ 0.36
VPS33A-208ENST00000543633 RSPH6AQ9H0K4 717 aa17.28■□□□□ 0.36
VPS33A-208ENST00000543633 ALKQ9UM73 1620 aa17.28■□□□□ 0.36
VPS33A-208ENST00000543633 FCHSD2O94868 740 aa17.27■□□□□ 0.36
VPS33A-208ENST00000543633 HDGFL2Q7Z4V5 671 aaPredicted RBP17.27■□□□□ 0.36
VPS33A-208ENST00000543633 NOB1Q9ULX3 412 aaKnown RBP17.27■□□□□ 0.36
VPS33A-208ENST00000543633 DDX11L8A8MPP1 907 aa17.26■□□□□ 0.35
VPS33A-208ENST00000543633 MFAP1P55081 439 aaKnown RBP17.26■□□□□ 0.35
VPS33A-208ENST00000543633 TMEM57Q8N5G2 664 aa17.26■□□□□ 0.35
VPS33A-208ENST00000543633 GGNBP2Q9H3C7 697 aa17.26■□□□□ 0.35
VPS33A-208ENST00000543633 RIPK4P57078 832 aa17.26■□□□□ 0.35
VPS33A-208ENST00000543633 CIZ1Q9ULV3 898 aaPredicted RBP17.26■□□□□ 0.35
VPS33A-208ENST00000543633 CALD1Q05682 793 aaKnown RBP17.25■□□□□ 0.35
VPS33A-208ENST00000543633 ARHGAP45Q92619 1136 aa17.25■□□□□ 0.35
VPS33A-208ENST00000543633 GOLGA6L3A6NEY3 463 aa17.25■□□□□ 0.35
VPS33A-208ENST00000543633 FER1L4A9Z1Z3 1794 aa17.25■□□□□ 0.35
VPS33A-208ENST00000543633 EIF5BO60841 1220 aaKnown RBP17.24■□□□□ 0.35
VPS33A-208ENST00000543633 DDIT3P35638 169 aa17.24■□□□□ 0.35
VPS33A-208ENST00000543633 A2ML1A8K2U0 1454 aa17.24■□□□□ 0.35
VPS33A-208ENST00000543633 PTMSP20962 102 aa17.23■□□□□ 0.35
VPS33A-208ENST00000543633 BMP2KLQ5H9B9 411 aa17.23■□□□□ 0.35
VPS33A-208ENST00000543633 GCC1Q96CN9 775 aa17.23■□□□□ 0.35
VPS33A-208ENST00000543633 ZNF692Q9BU19 519 aaPredicted RBP17.23■□□□□ 0.35
VPS33A-208ENST00000543633 C3P01024 1663 aa17.23■□□□□ 0.35
VPS33A-208ENST00000543633 SETD1AO15047 1707 aaKnown RBP17.22■□□□□ 0.35
VPS33A-208ENST00000543633 CDK12Q9NYV4 1490 aaPredicted RBP17.21■□□□□ 0.35
VPS33A-208ENST00000543633 CHD1LQ86WJ1 897 aa17.21■□□□□ 0.35
VPS33A-208ENST00000543633 TNRQ92752 1358 aa17.21■□□□□ 0.35
VPS33A-208ENST00000543633 KIF24Q5T7B8 1368 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms