RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TTC21A	Q8NDW8	1320 aa		13.9	□□□□□ -0.19
CPSF7-221	ENST00000543545	CD163L1	Q9NR16	1453 aa		13.89	□□□□□ -0.19
CPSF7-221	ENST00000543545	SBNO1	A3KN83	1393 aa		13.89	□□□□□ -0.19
CPSF7-221	ENST00000543545	BRD4	O60885	1362 aa	Predicted RBP	13.89	□□□□□ -0.19
CPSF7-221	ENST00000543545	HAP1	P54257	671 aa	Predicted RBP	13.89	□□□□□ -0.19
CPSF7-221	ENST00000543545	EDC4	Q6P2E9	1401 aa	Known RBP	13.89	□□□□□ -0.19
CPSF7-221	ENST00000543545	NLRP13	Q86W25	1043 aa		13.88	□□□□□ -0.19
CPSF7-221	ENST00000543545	GGNBP2	Q9H3C7	697 aa		13.88	□□□□□ -0.19
CPSF7-221	ENST00000543545	ROBO1	Q9Y6N7	1651 aa		13.88	□□□□□ -0.19
CPSF7-221	ENST00000543545	FYB1	O15117	783 aa		13.87	□□□□□ -0.19
CPSF7-221	ENST00000543545	CC2D1B	Q5T0F9	858 aa	Known RBP	13.87	□□□□□ -0.19
CPSF7-221	ENST00000543545	COG3	Q96JB2	828 aa		13.87	□□□□□ -0.19
CPSF7-221	ENST00000543545	ZRANB1	Q9UGI0	708 aa		13.87	□□□□□ -0.19
CPSF7-221	ENST00000543545	ARHGEF10	O15013	1369 aa		13.86	□□□□□ -0.19
CPSF7-221	ENST00000543545	KIF1A	Q12756	1690 aa		13.86	□□□□□ -0.19
CPSF7-221	ENST00000543545	SOX12	O15370	315 aa		13.86	□□□□□ -0.19
CPSF7-221	ENST00000543545	PER1	O15534	1290 aa	Predicted RBP	13.86	□□□□□ -0.19
CPSF7-221	ENST00000543545	PXDN	Q92626	1479 aa		13.86	□□□□□ -0.19
CPSF7-221	ENST00000543545	TNS3	Q68CZ2	1445 aa		13.85	□□□□□ -0.19
CPSF7-221	ENST00000543545	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.85	□□□□□ -0.19
CPSF7-221	ENST00000543545	NUTM2E	B1AL46	878 aa	Predicted RBP	13.85	□□□□□ -0.19
CPSF7-221	ENST00000543545	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.85	□□□□□ -0.19
CPSF7-221	ENST00000543545	CABLES1	Q8TDN4	633 aa		13.85	□□□□□ -0.19
CPSF7-221	ENST00000543545	ITSN1	Q15811	1721 aa		13.84	□□□□□ -0.19
CPSF7-221	ENST00000543545	RGPD8	O14715	1765 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF7-221	ENST00000543545	SSH2	Q76I76	1423 aa		13.84	□□□□□ -0.19
CPSF7-221	ENST00000543545	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF7-221	ENST00000543545	MORC1	Q86VD1	984 aa		13.84	□□□□□ -0.19
CPSF7-221	ENST00000543545	TOPAZ1	Q8N9V7	1692 aa		13.84	□□□□□ -0.19
CPSF7-221	ENST00000543545	JCAD	Q9P266	1359 aa		13.83	□□□□□ -0.19
CPSF7-221	ENST00000543545	ZBTB7C	A1YPR0	619 aa		13.83	□□□□□ -0.2
CPSF7-221	ENST00000543545	TNNT2	P45379	298 aa	Predicted RBP	13.83	□□□□□ -0.2
CPSF7-221	ENST00000543545	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.82	□□□□□ -0.2
CPSF7-221	ENST00000543545	PNPLA6	Q8IY17	1366 aa		13.82	□□□□□ -0.2
CPSF7-221	ENST00000543545	ILDR1	Q86SU0	546 aa	Predicted RBP	13.81	□□□□□ -0.2
CPSF7-221	ENST00000543545	KCNH5	Q8NCM2	988 aa		13.81	□□□□□ -0.2
CPSF7-221	ENST00000543545	ADAMTS2	O95450	1211 aa		13.8	□□□□□ -0.2
CPSF7-221	ENST00000543545	GC	P02774	474 aa		13.8	□□□□□ -0.2
CPSF7-221	ENST00000543545	USP31	Q70CQ4	1352 aa		13.8	□□□□□ -0.2
CPSF7-221	ENST00000543545	ZC3H6	P61129	1189 aa	Known RBP	13.79	□□□□□ -0.2
CPSF7-221	ENST00000543545	MEX3C	Q5U5Q3	659 aa	Known RBP	13.79	□□□□□ -0.2
CPSF7-221	ENST00000543545	NSD2	O96028	1365 aa		13.79	□□□□□ -0.2
CPSF7-221	ENST00000543545	PHLPP1	O60346	1717 aa		13.78	□□□□□ -0.2
CPSF7-221	ENST00000543545	ANP32C	O43423	234 aa		13.78	□□□□□ -0.2
CPSF7-221	ENST00000543545	FBLN1	P23142	703 aa		13.78	□□□□□ -0.2
CPSF7-221	ENST00000543545	SPATA31A6	Q5VVP1	1343 aa		13.78	□□□□□ -0.2
CPSF7-221	ENST00000543545	NHSL1	Q5SYE7	1610 aa		13.78	□□□□□ -0.2
CPSF7-221	ENST00000543545	MYOM1	P52179	1685 aa		13.78	□□□□□ -0.2
CPSF7-221	ENST00000543545	PPM1G	O15355	546 aa	Predicted RBP	13.77	□□□□□ -0.21
CPSF7-221	ENST00000543545	USP19	O94966	1318 aa		13.77	□□□□□ -0.21
CPSF7-221	ENST00000543545	DIEXF	Q68CQ4	756 aa	Known RBP	13.77	□□□□□ -0.21
CPSF7-221	ENST00000543545	NPC1L1	Q9UHC9	1359 aa		13.76	□□□□□ -0.21
CPSF7-221	ENST00000543545	RALBP1	Q15311	655 aa		13.76	□□□□□ -0.21
CPSF7-221	ENST00000543545	PRDM11	Q9NQV5	511 aa		13.76	□□□□□ -0.21
CPSF7-221	ENST00000543545	COL16A1	Q07092	1604 aa	Predicted RBP	13.75	□□□□□ -0.21
CPSF7-221	ENST00000543545	AMPH	P49418	695 aa		13.75	□□□□□ -0.21
CPSF7-221	ENST00000543545	RRS1	Q15050	365 aa	Known RBP	13.75	□□□□□ -0.21
CPSF7-221	ENST00000543545	OVOS2	A0A0J9YW53	1432 aa		13.74	□□□□□ -0.21
CPSF7-221	ENST00000543545	OVOS2	Q6IE36	1432 aa		13.74	□□□□□ -0.21
CPSF7-221	ENST00000543545	CHRNA2	Q15822	529 aa		13.74	□□□□□ -0.21
CPSF7-221	ENST00000543545	AKAP12	Q02952	1782 aa		13.73	□□□□□ -0.21
CPSF7-221	ENST00000543545	MON2	Q7Z3U7	1717 aa		13.73	□□□□□ -0.21
CPSF7-221	ENST00000543545	ARHGEF25	Q86VW2	580 aa		13.73	□□□□□ -0.21
CPSF7-221	ENST00000543545	NGLY1	Q96IV0	654 aa		13.73	□□□□□ -0.21
CPSF7-221	ENST00000543545	C8orf37	Q96NL8	207 aa		13.73	□□□□□ -0.21
CPSF7-221	ENST00000543545	KIAA0232	Q92628	1395 aa		13.72	□□□□□ -0.21
CPSF7-221	ENST00000543545	MAP3K19	Q56UN5	1328 aa		13.72	□□□□□ -0.21
CPSF7-221	ENST00000543545	FAM83G	A6ND36	823 aa		13.72	□□□□□ -0.21
CPSF7-221	ENST00000543545	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.72	□□□□□ -0.21
CPSF7-221	ENST00000543545	EMILIN1	Q9Y6C2	1016 aa		13.72	□□□□□ -0.21
CPSF7-221	ENST00000543545	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.72	□□□□□ -0.21
CPSF7-221	ENST00000543545	PPP2R1A	P30153	589 aa		13.71	□□□□□ -0.21
CPSF7-221	ENST00000543545	MTHFS	P49914	203 aa		13.71	□□□□□ -0.21
CPSF7-221	ENST00000543545	POLK	Q9UBT6	870 aa		13.71	□□□□□ -0.21
CPSF7-221	ENST00000543545	EVA1C	P58658	441 aa		13.7	□□□□□ -0.22
CPSF7-221	ENST00000543545	NRK	Q7Z2Y5	1582 aa		13.7	□□□□□ -0.22
CPSF7-221	ENST00000543545	AATK	Q6ZMQ8	1374 aa		13.7	□□□□□ -0.22
CPSF7-221	ENST00000543545	PIK3C2A	O00443	1686 aa		13.69	□□□□□ -0.22
CPSF7-221	ENST00000543545	IP6K1	Q92551	441 aa		13.69	□□□□□ -0.22
CPSF7-221	ENST00000543545	LTV1	Q96GA3	475 aa	Predicted RBP	13.69	□□□□□ -0.22
CPSF7-221	ENST00000543545	MED1	Q15648	1581 aa	Predicted RBP	13.69	□□□□□ -0.22
CPSF7-221	ENST00000543545	CPD	O75976	1380 aa		13.69	□□□□□ -0.22
CPSF7-221	ENST00000543545	PARD3	Q8TEW0	1356 aa		13.69	□□□□□ -0.22
CPSF7-221	ENST00000543545	CSB-PGBD3	P0DP91	1061 aa		13.68	□□□□□ -0.22
CPSF7-221	ENST00000543545	HOXC9	P31274	260 aa		13.68	□□□□□ -0.22
CPSF7-221	ENST00000543545	CFAP53	Q96M91	514 aa		13.68	□□□□□ -0.22
CPSF7-221	ENST00000543545	STRN4	Q9NRL3	753 aa		13.68	□□□□□ -0.22
CPSF7-221	ENST00000543545	BTG4	Q9NY30	223 aa		13.68	□□□□□ -0.22
CPSF7-221	ENST00000543545	ALS2	Q96Q42	1657 aa		13.68	□□□□□ -0.22
CPSF7-221	ENST00000543545	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.67	□□□□□ -0.22
CPSF7-221	ENST00000543545	HSP90AB2P	Q58FF8	381 aa		13.67	□□□□□ -0.22
CPSF7-221	ENST00000543545	SLIT3	O75094	1523 aa		13.67	□□□□□ -0.22
CPSF7-221	ENST00000543545	PHF23	Q9BUL5	403 aa	Predicted RBP	13.66	□□□□□ -0.22
CPSF7-221	ENST00000543545	AXIN2	Q9Y2T1	843 aa		13.66	□□□□□ -0.22
CPSF7-221	ENST00000543545	ANKRD24	Q8TF21	1146 aa		13.65	□□□□□ -0.22
CPSF7-221	ENST00000543545	USP21	Q9UK80	565 aa		13.65	□□□□□ -0.22
CPSF7-221	ENST00000543545	CCDC9	Q9Y3X0	531 aa	Known RBP	13.65	□□□□□ -0.22
CPSF7-221	ENST00000543545	AFF2	P51816	1311 aa		13.64	□□□□□ -0.23
CPSF7-221	ENST00000543545	LRP6	O75581	1613 aa		13.64	□□□□□ -0.23
CPSF7-221	ENST00000543545	FLT4	P35916	1363 aa		13.64	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms