RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 MROH2AA6NES4 1674 aa17.13■□□□□ 0.33
PTPN1-202ENST00000541713 ANKRD36BQ8N2N9 1353 aa17.13■□□□□ 0.33
PTPN1-202ENST00000541713 C22orf23Q9BZE7 217 aa17.12■□□□□ 0.33
PTPN1-202ENST00000541713 ZNF428Q96B54 188 aa17.12■□□□□ 0.33
PTPN1-202ENST00000541713 POLKQ9UBT6 870 aa17.12■□□□□ 0.33
PTPN1-202ENST00000541713 MYOM1P52179 1685 aa17.11■□□□□ 0.33
PTPN1-202ENST00000541713 AEBP1Q8IUX7 1158 aa17.11■□□□□ 0.33
PTPN1-202ENST00000541713 EFCAB6Q5THR3 1501 aa17.11■□□□□ 0.33
PTPN1-202ENST00000541713 LAMC1P11047 1609 aa17.11■□□□□ 0.33
PTPN1-202ENST00000541713 C14orf37Q86TY3 774 aa17.11■□□□□ 0.33
PTPN1-202ENST00000541713 RBM33Q96EV2 1170 aaKnown RBP17.11■□□□□ 0.33
PTPN1-202ENST00000541713 SLC26A8Q96RN1 970 aa17.1■□□□□ 0.33
PTPN1-202ENST00000541713 PLEKHF1Q96S99 279 aa17.1■□□□□ 0.33
PTPN1-202ENST00000541713 RPGRIP1LQ68CZ1 1315 aa17.1■□□□□ 0.33
PTPN1-202ENST00000541713 TPRNQ4KMQ1 711 aa17.09■□□□□ 0.33
PTPN1-202ENST00000541713 SLC52A1Q9NWF4 448 aa17.09■□□□□ 0.33
PTPN1-202ENST00000541713 DDX19BQ9UMR2 479 aa17.09■□□□□ 0.33
PTPN1-202ENST00000541713 MCM10Q7L590 875 aa17.09■□□□□ 0.33
PTPN1-202ENST00000541713 KIF1BO60333 1816 aa17.09■□□□□ 0.33
PTPN1-202ENST00000541713 POGZQ7Z3K3 1410 aa17.09■□□□□ 0.33
PTPN1-202ENST00000541713 CEBPAP49715 358 aaPredicted RBP17.09■□□□□ 0.33
PTPN1-202ENST00000541713 LTV1Q96GA3 475 aaPredicted RBP17.08■□□□□ 0.33
PTPN1-202ENST00000541713 KIDINS220Q9ULH0 1771 aa17.08■□□□□ 0.32
PTPN1-202ENST00000541713 SLC4A10Q6U841 1118 aa17.08■□□□□ 0.32
PTPN1-202ENST00000541713 RBM42Q9BTD8 480 aaKnown RBP17.08■□□□□ 0.32
PTPN1-202ENST00000541713 C8orf58Q8NAV2 365 aa17.07■□□□□ 0.32
PTPN1-202ENST00000541713 MROH1Q8NDA8 1641 aa17.07■□□□□ 0.32
PTPN1-202ENST00000541713 MYOM2P54296 1465 aa17.06■□□□□ 0.32
PTPN1-202ENST00000541713 INO80Q9ULG1 1556 aaPredicted RBP17.06■□□□□ 0.32
PTPN1-202ENST00000541713 IPO8O15397 1037 aaKnown RBP17.06■□□□□ 0.32
PTPN1-202ENST00000541713 SULT6B1Q6IMI4 303 aa17.06■□□□□ 0.32
PTPN1-202ENST00000541713 NGEFQ8N5V2 710 aa17.05■□□□□ 0.32
PTPN1-202ENST00000541713 COG3Q96JB2 828 aa17.05■□□□□ 0.32
PTPN1-202ENST00000541713 TBC1D32Q96NH3 1257 aa17.05■□□□□ 0.32
PTPN1-202ENST00000541713 MBIPQ9NS73 344 aa17.05■□□□□ 0.32
PTPN1-202ENST00000541713 C16orf71Q8IYS4 520 aaPredicted RBP17.04■□□□□ 0.32
PTPN1-202ENST00000541713 PHF23Q9BUL5 403 aaPredicted RBP17.04■□□□□ 0.32
PTPN1-202ENST00000541713 TWISTNBQ3B726 338 aaPredicted RBP17.04■□□□□ 0.32
PTPN1-202ENST00000541713 NUDT16Q96DE0 195 aaKnown RBP17.04■□□□□ 0.32
PTPN1-202ENST00000541713 SMARCA5O60264 1052 aaPredicted RBP17.03■□□□□ 0.32
PTPN1-202ENST00000541713 HSP90AB1P08238 724 aaKnown RBP17.03■□□□□ 0.32
PTPN1-202ENST00000541713 TULP4Q9NRJ4 1543 aa17.03■□□□□ 0.32
PTPN1-202ENST00000541713 FOXD4L5Q5VV16 416 aaPredicted RBP17.02■□□□□ 0.32
PTPN1-202ENST00000541713 FOXD4L4Q8WXT5 416 aaPredicted RBP17.02■□□□□ 0.32
PTPN1-202ENST00000541713 FOXO3O43524 673 aa17.02■□□□□ 0.31
PTPN1-202ENST00000541713 RSPH6AQ9H0K4 717 aa17.02■□□□□ 0.31
PTPN1-202ENST00000541713 SBNO2Q9Y2G9 1366 aa17.01■□□□□ 0.31
PTPN1-202ENST00000541713 CCDC27Q2M243 656 aa17.01■□□□□ 0.31
PTPN1-202ENST00000541713 HSCBQ8IWL3 235 aa17.01■□□□□ 0.31
PTPN1-202ENST00000541713 YTHDC2Q9H6S0 1430 aaKnown RBP17.01■□□□□ 0.31
PTPN1-202ENST00000541713 ZBTB40Q9NUA8 1239 aa17.01■□□□□ 0.31
PTPN1-202ENST00000541713 ABCA9Q8IUA7 1624 aa17.01■□□□□ 0.31
PTPN1-202ENST00000541713 HSP90AB2PQ58FF8 381 aa17■□□□□ 0.31
PTPN1-202ENST00000541713 CHD1LQ86WJ1 897 aa17■□□□□ 0.31
PTPN1-202ENST00000541713 FCHSD2O94868 740 aa17■□□□□ 0.31
PTPN1-202ENST00000541713 TSHZ3Q63HK5 1081 aa17■□□□□ 0.31
PTPN1-202ENST00000541713 NOL8Q76FK4 1167 aaKnown RBP17■□□□□ 0.31
PTPN1-202ENST00000541713 ABCC3O15438 1527 aa17■□□□□ 0.31
PTPN1-202ENST00000541713 QRICH2Q9H0J4 1663 aa17■□□□□ 0.31
PTPN1-202ENST00000541713 NFE2L2Q16236 605 aa17■□□□□ 0.31
PTPN1-202ENST00000541713 VAMP4O75379 141 aa16.99■□□□□ 0.31
PTPN1-202ENST00000541713 OTUD7AQ8TE49 926 aaPredicted RBP16.99■□□□□ 0.31
PTPN1-202ENST00000541713 ADGRB3O60242 1522 aa16.99■□□□□ 0.31
PTPN1-202ENST00000541713 F6X3S4 739 aa16.99■□□□□ 0.31
PTPN1-202ENST00000541713 ABCC11Q96J66 1382 aa16.98■□□□□ 0.31
PTPN1-202ENST00000541713 ADGRB1O14514 1584 aa16.98■□□□□ 0.31
PTPN1-202ENST00000541713 VWDEQ8N2E2 1590 aa16.98■□□□□ 0.31
PTPN1-202ENST00000541713 WASLO00401 505 aaPredicted RBP16.97■□□□□ 0.31
PTPN1-202ENST00000541713 FRMPD1Q5SYB0 1578 aa16.97■□□□□ 0.31
PTPN1-202ENST00000541713 KIF16BQ96L93 1317 aa16.97■□□□□ 0.31
PTPN1-202ENST00000541713 DEPDC5O75140 1603 aa16.97■□□□□ 0.31
PTPN1-202ENST00000541713 PANK2Q9BZ23 570 aa16.97■□□□□ 0.31
PTPN1-202ENST00000541713 GLI2P10070 1586 aa16.97■□□□□ 0.31
PTPN1-202ENST00000541713 NCLP19338 710 aaKnown RBP16.96■□□□□ 0.31
PTPN1-202ENST00000541713 FOXD4L6Q3SYB3 417 aaPredicted RBP16.95■□□□□ 0.3
PTPN1-202ENST00000541713 FOXD4L3Q6VB84 417 aaPredicted RBP16.95■□□□□ 0.3
PTPN1-202ENST00000541713 CD2BP2O95400 341 aaKnown RBP16.95■□□□□ 0.3
PTPN1-202ENST00000541713 PNNQ9H307 717 aaKnown RBP16.95■□□□□ 0.3
PTPN1-202ENST00000541713 GNAI1P63096 354 aa16.94■□□□□ 0.3
PTPN1-202ENST00000541713 MRPL50Q8N5N7 158 aaKnown RBP16.94■□□□□ 0.3
PTPN1-202ENST00000541713 METP08581 1390 aa16.94■□□□□ 0.3
PTPN1-202ENST00000541713 SIRT2Q8IXJ6 389 aa16.93■□□□□ 0.3
PTPN1-202ENST00000541713 CCDC61Q9Y6R9 512 aa16.93■□□□□ 0.3
PTPN1-202ENST00000541713 ZBTB7BO15156 539 aaPredicted RBP16.93■□□□□ 0.3
PTPN1-202ENST00000541713 DTNBO60941 627 aa16.93■□□□□ 0.3
PTPN1-202ENST00000541713 IL13P35225 146 aa16.93■□□□□ 0.3
PTPN1-202ENST00000541713 LMOD2Q6P5Q4 547 aa16.93■□□□□ 0.3
PTPN1-202ENST00000541713 NGDNQ8NEJ9 315 aaKnown RBP16.93■□□□□ 0.3
PTPN1-202ENST00000541713 MLH3Q9UHC1 1453 aa16.92■□□□□ 0.3
PTPN1-202ENST00000541713 NINLQ9Y2I6 1382 aa16.92■□□□□ 0.3
PTPN1-202ENST00000541713 CAMSAP1Q5T5Y3 1602 aa16.92■□□□□ 0.3
PTPN1-202ENST00000541713 NRXN1Q9ULB1 1477 aa16.92■□□□□ 0.3
PTPN1-202ENST00000541713 SLC4A2P04920 1241 aa16.92■□□□□ 0.3
PTPN1-202ENST00000541713 NUCB1Q02818 461 aa16.92■□□□□ 0.3
PTPN1-202ENST00000541713 SMC5Q8IY18 1101 aa16.92■□□□□ 0.3
PTPN1-202ENST00000541713 USHBP1Q8N6Y0 703 aa16.91■□□□□ 0.3
PTPN1-202ENST00000541713 IQSEC2Q5JU85 1478 aa16.91■□□□□ 0.3
PTPN1-202ENST00000541713 HDAC1Q13547 482 aaPredicted RBP16.91■□□□□ 0.3
PTPN1-202ENST00000541713 TBC1D9Q6ZT07 1266 aa16.91■□□□□ 0.3
PTPN1-202ENST00000541713 CHAMP1Q96JM3 812 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms