RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 TTC21AQ8NDW8 1320 aa26.05■■□□□ 1.76
VPS33A-205ENST00000541169 MON2Q7Z3U7 1717 aa26.04■■□□□ 1.76
VPS33A-205ENST00000541169 ANKRD36BQ8N2N9 1353 aa26.04■■□□□ 1.76
VPS33A-205ENST00000541169 LMOD2Q6P5Q4 547 aa26.02■■□□□ 1.76
VPS33A-205ENST00000541169 EDC4Q6P2E9 1401 aaKnown RBP26.02■■□□□ 1.76
VPS33A-205ENST00000541169 SSH2Q76I76 1423 aa26.02■■□□□ 1.76
VPS33A-205ENST00000541169 CD163L1Q9NR16 1453 aa26.02■■□□□ 1.76
VPS33A-205ENST00000541169 MED1Q15648 1581 aaPredicted RBP26■■□□□ 1.75
VPS33A-205ENST00000541169 ABTB2Q8N961 1025 aa26■■□□□ 1.75
VPS33A-205ENST00000541169 A0A1W2PP64 1363 aa25.99■■□□□ 1.75
VPS33A-205ENST00000541169 NLRP13Q86W25 1043 aa25.99■■□□□ 1.75
VPS33A-205ENST00000541169 TTC21BQ7Z4L5 1316 aa25.98■■□□□ 1.75
VPS33A-205ENST00000541169 NRKQ7Z2Y5 1582 aa25.98■■□□□ 1.75
VPS33A-205ENST00000541169 MYOM1P52179 1685 aa25.97■■□□□ 1.75
VPS33A-205ENST00000541169 HAP1P54257 671 aaPredicted RBP25.96■■□□□ 1.75
VPS33A-205ENST00000541169 NUTM2BA6NNL0 878 aaPredicted RBP25.95■■□□□ 1.74
VPS33A-205ENST00000541169 NUTM2EB1AL46 878 aaPredicted RBP25.95■■□□□ 1.74
VPS33A-205ENST00000541169 MEX3CQ5U5Q3 659 aaKnown RBP25.95■■□□□ 1.74
VPS33A-205ENST00000541169 NUTM2AQ8IVF1 878 aaPredicted RBP25.95■■□□□ 1.74
VPS33A-205ENST00000541169 KIF7Q2M1P5 1343 aa25.93■■□□□ 1.74
VPS33A-205ENST00000541169 POLR3GLQ9BT43 218 aa25.93■■□□□ 1.74
VPS33A-205ENST00000541169 LRP6O75581 1613 aa25.92■■□□□ 1.74
VPS33A-205ENST00000541169 C11orf95C9JLR9 678 aaPredicted RBP25.91■■□□□ 1.74
VPS33A-205ENST00000541169 NLRP6P59044 892 aa25.91■■□□□ 1.74
VPS33A-205ENST00000541169 MARF1Q9Y4F3 1742 aaKnown RBP25.91■■□□□ 1.74
VPS33A-205ENST00000541169 USP19O94966 1318 aa25.9■■□□□ 1.74
VPS33A-205ENST00000541169 ABCA3Q99758 1704 aa25.9■■□□□ 1.74
VPS33A-205ENST00000541169 USP31Q70CQ4 1352 aa25.9■■□□□ 1.74
VPS33A-205ENST00000541169 PIK3C2AO00443 1686 aa25.9■■□□□ 1.74
VPS33A-205ENST00000541169 CRYBG1Q9Y4K1 1723 aa25.88■■□□□ 1.73
VPS33A-205ENST00000541169 USP54Q70EL1 1684 aa25.88■■□□□ 1.73
VPS33A-205ENST00000541169 CCDC7Q96M83 1385 aa25.88■■□□□ 1.73
VPS33A-205ENST00000541169 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.88■■□□□ 1.73
VPS33A-205ENST00000541169 KCNH5Q8NCM2 988 aa25.88■■□□□ 1.73
VPS33A-205ENST00000541169 PHF23Q9BUL5 403 aaPredicted RBP25.87■■□□□ 1.73
VPS33A-205ENST00000541169 PHRF1Q9P1Y6 1649 aaKnown RBP25.85■■□□□ 1.73
VPS33A-205ENST00000541169 ADAMTS2O95450 1211 aa25.85■■□□□ 1.73
VPS33A-205ENST00000541169 CABLES1Q8TDN4 633 aa25.85■■□□□ 1.73
VPS33A-205ENST00000541169 SLIT3O75094 1523 aa25.84■■□□□ 1.73
VPS33A-205ENST00000541169 NUTM2GQ5VZR2 741 aa25.84■■□□□ 1.73
VPS33A-205ENST00000541169 CGNL1Q0VF96 1302 aa25.84■■□□□ 1.73
VPS33A-205ENST00000541169 WASHC2AQ641Q2 1341 aa25.84■■□□□ 1.73
VPS33A-205ENST00000541169 GCP02774 474 aa25.83■■□□□ 1.73
VPS33A-205ENST00000541169 ZNF772Q68DY9 489 aaPredicted RBP25.83■■□□□ 1.73
VPS33A-205ENST00000541169 NGLY1Q96IV0 654 aa25.83■■□□□ 1.73
VPS33A-205ENST00000541169 CPDO75976 1380 aa25.82■■□□□ 1.72
VPS33A-205ENST00000541169 CARD14Q9BXL6 1004 aa25.82■■□□□ 1.72
VPS33A-205ENST00000541169 PANK3Q9H999 370 aa25.82■■□□□ 1.72
VPS33A-205ENST00000541169 NSD3Q9BZ95 1437 aa25.81■■□□□ 1.72
VPS33A-205ENST00000541169 NME9Q86XW9 330 aa25.81■■□□□ 1.72
VPS33A-205ENST00000541169 FNBP4Q8N3X1 1017 aaPredicted RBP25.81■■□□□ 1.72
VPS33A-205ENST00000541169 COG3Q96JB2 828 aa25.81■■□□□ 1.72
VPS33A-205ENST00000541169 C8orf37Q96NL8 207 aa25.81■■□□□ 1.72
VPS33A-205ENST00000541169 COL14A1Q05707 1796 aaKnown RBP25.79■■□□□ 1.72
VPS33A-205ENST00000541169 KIF20BQ96Q89 1820 aa25.79■■□□□ 1.72
VPS33A-205ENST00000541169 OVOS2A0A0J9YW53 1432 aa25.79■■□□□ 1.72
VPS33A-205ENST00000541169 OVOS2Q6IE36 1432 aa25.79■■□□□ 1.72
VPS33A-205ENST00000541169 FYB1O15117 783 aa25.78■■□□□ 1.72
VPS33A-205ENST00000541169 PRDM11Q9NQV5 511 aa25.78■■□□□ 1.72
VPS33A-205ENST00000541169 KNSTRNQ9Y448 316 aa25.78■■□□□ 1.72
VPS33A-205ENST00000541169 NSD2O96028 1365 aa25.78■■□□□ 1.72
VPS33A-205ENST00000541169 NWD2Q9ULI1 1742 aa25.77■■□□□ 1.72
VPS33A-205ENST00000541169 PLEKHG5O94827 1062 aa25.76■■□□□ 1.71
VPS33A-205ENST00000541169 AFF2P51816 1311 aa25.76■■□□□ 1.71
VPS33A-205ENST00000541169 SLIT2O94813 1529 aa25.74■■□□□ 1.71
VPS33A-205ENST00000541169 KIAA0232Q92628 1395 aa25.74■■□□□ 1.71
VPS33A-205ENST00000541169 FAM83GA6ND36 823 aa25.74■■□□□ 1.71
VPS33A-205ENST00000541169 ABCC6O95255 1503 aa25.73■■□□□ 1.71
VPS33A-205ENST00000541169 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.72■■□□□ 1.71
VPS33A-205ENST00000541169 ZC3H6P61129 1189 aaKnown RBP25.72■■□□□ 1.71
VPS33A-205ENST00000541169 USP21Q9UK80 565 aa25.72■■□□□ 1.71
VPS33A-205ENST00000541169 AATKQ6ZMQ8 1374 aa25.71■■□□□ 1.71
VPS33A-205ENST00000541169 NFAT5O94916 1531 aa25.71■■□□□ 1.71
VPS33A-205ENST00000541169 PLCH1Q4KWH8 1693 aa25.71■■□□□ 1.71
VPS33A-205ENST00000541169 ARHGEF25Q86VW2 580 aa25.7■■□□□ 1.7
VPS33A-205ENST00000541169 UNC5CLQ8IV45 518 aa25.7■■□□□ 1.7
VPS33A-205ENST00000541169 GGNBP2Q9H3C7 697 aa25.7■■□□□ 1.7
VPS33A-205ENST00000541169 ZRANB1Q9UGI0 708 aa25.69■■□□□ 1.7
VPS33A-205ENST00000541169 TRPC5Q9UL62 973 aaPredicted RBP25.69■■□□□ 1.7
VPS33A-205ENST00000541169 ANKRD26Q9UPS8 1709 aa25.68■■□□□ 1.7
VPS33A-205ENST00000541169 BCL9LQ86UU0 1499 aa25.68■■□□□ 1.7
VPS33A-205ENST00000541169 NPC1L1Q9UHC9 1359 aa25.68■■□□□ 1.7
VPS33A-205ENST00000541169 PER1O15534 1290 aaPredicted RBP25.67■■□□□ 1.7
VPS33A-205ENST00000541169 RGS17Q9UGC6 210 aaPredicted RBP25.67■■□□□ 1.7
VPS33A-205ENST00000541169 BTG4Q9NY30 223 aa25.66■■□□□ 1.7
VPS33A-205ENST00000541169 QTRT2Q9H974 415 aaKnown RBP25.65■■□□□ 1.7
VPS33A-205ENST00000541169 KIF24Q5T7B8 1368 aa25.65■■□□□ 1.7
VPS33A-205ENST00000541169 LMO7Q8WWI1 1683 aa25.64■■□□□ 1.7
VPS33A-205ENST00000541169 SOX12O15370 315 aa25.63■■□□□ 1.69
VPS33A-205ENST00000541169 ATRNO75882 1429 aa25.63■■□□□ 1.69
VPS33A-205ENST00000541169 LTN1O94822 1766 aa25.62■■□□□ 1.69
VPS33A-205ENST00000541169 CHRNA2Q15822 529 aa25.62■■□□□ 1.69
VPS33A-205ENST00000541169 VPS72Q15906 364 aa25.62■■□□□ 1.69
VPS33A-205ENST00000541169 AMER1Q5JTC6 1135 aaPredicted RBP25.62■■□□□ 1.69
VPS33A-205ENST00000541169 RTL1A6NKG5 1358 aa25.61■■□□□ 1.69
VPS33A-205ENST00000541169 NRAPQ86VF7 1730 aa25.61■■□□□ 1.69
VPS33A-205ENST00000541169 EVA1CP58658 441 aa25.61■■□□□ 1.69
VPS33A-205ENST00000541169 BLMP54132 1417 aaPredicted RBP25.61■■□□□ 1.69
VPS33A-205ENST00000541169 COL18A1P39060 1754 aa25.6■■□□□ 1.69
VPS33A-205ENST00000541169 RXRBP28702 533 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms