RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 C20orf194Q5TEA3 1177 aa18.03■□□□□ 0.48
RTN3-210ENST00000540798 EDC4Q6P2E9 1401 aaKnown RBP18.03■□□□□ 0.48
RTN3-210ENST00000540798 PPIP5K1Q6PFW1 1433 aa18.03■□□□□ 0.48
RTN3-210ENST00000540798 WDR63Q8IWG1 891 aa18.03■□□□□ 0.48
RTN3-210ENST00000540798 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.01■□□□□ 0.47
RTN3-210ENST00000540798 PLEKHF1Q96S99 279 aa18.01■□□□□ 0.47
RTN3-210ENST00000540798 MAP2P11137 1827 aaKnown RBP18.01■□□□□ 0.47
RTN3-210ENST00000540798 NRKQ7Z2Y5 1582 aa18.01■□□□□ 0.47
RTN3-210ENST00000540798 TXNDC2Q86VQ3 553 aa18.01■□□□□ 0.47
RTN3-210ENST00000540798 ROBO2Q9HCK4 1378 aa18■□□□□ 0.47
RTN3-210ENST00000540798 LTKP29376 864 aa17.99■□□□□ 0.47
RTN3-210ENST00000540798 U2AF1L5P0DN76 240 aaPredicted RBP17.98■□□□□ 0.47
RTN3-210ENST00000540798 U2AF1Q01081 240 aaKnown RBP eCLIP17.98■□□□□ 0.471e-7■■■□□ 14.6
RTN3-210ENST00000540798 DIP2AQ14689 1571 aa17.98■□□□□ 0.47
RTN3-210ENST00000540798 RRP7AQ9Y3A4 280 aaKnown RBP17.97■□□□□ 0.47
RTN3-210ENST00000540798 PTPRUQ92729 1446 aa17.96■□□□□ 0.47
RTN3-210ENST00000540798 NUDT16Q96DE0 195 aaKnown RBP17.96■□□□□ 0.47
RTN3-210ENST00000540798 KDM2BQ8NHM5 1336 aa17.96■□□□□ 0.47
RTN3-210ENST00000540798 AATKQ6ZMQ8 1374 aa17.96■□□□□ 0.46
RTN3-210ENST00000540798 BCAR3O75815 825 aa17.95■□□□□ 0.46
RTN3-210ENST00000540798 CEBPAP49715 358 aaPredicted RBP17.95■□□□□ 0.46
RTN3-210ENST00000540798 CCDC61Q9Y6R9 512 aa17.95■□□□□ 0.46
RTN3-210ENST00000540798 LRRC7Q96NW7 1537 aa17.94■□□□□ 0.46
RTN3-210ENST00000540798 PRR36Q9H6K5 1346 aa17.94■□□□□ 0.46
RTN3-210ENST00000540798 CDK12Q9NYV4 1490 aaPredicted RBP17.94■□□□□ 0.46
RTN3-210ENST00000540798 POLKQ9UBT6 870 aa17.94■□□□□ 0.46
RTN3-210ENST00000540798 DIAPH1O60610 1272 aaKnown RBP17.93■□□□□ 0.46
RTN3-210ENST00000540798 PTCH1Q13635 1447 aa17.93■□□□□ 0.46
RTN3-210ENST00000540798 XRN1Q8IZH2 1706 aaKnown RBP17.93■□□□□ 0.46
RTN3-210ENST00000540798 RIMS1Q86UR5 1692 aaKnown RBP17.93■□□□□ 0.46
RTN3-210ENST00000540798 TCERG1O14776 1098 aaKnown RBP17.93■□□□□ 0.46
RTN3-210ENST00000540798 NEUROD2Q15784 382 aa17.92■□□□□ 0.46
RTN3-210ENST00000540798 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.92■□□□□ 0.46
RTN3-210ENST00000540798 NALCNQ8IZF0 1738 aa17.92■□□□□ 0.46
RTN3-210ENST00000540798 PDE3AQ14432 1141 aa17.92■□□□□ 0.46
RTN3-210ENST00000540798 TMPOP42166 694 aaKnown RBP17.91■□□□□ 0.46
RTN3-210ENST00000540798 TRIM35Q9UPQ4 493 aa17.9■□□□□ 0.46
RTN3-210ENST00000540798 U2SURPO15042 1029 aaKnown RBP17.9■□□□□ 0.46
RTN3-210ENST00000540798 MS4A1P11836 297 aa17.9■□□□□ 0.46
RTN3-210ENST00000540798 RARSP54136 660 aaKnown RBP17.9■□□□□ 0.46
RTN3-210ENST00000540798 ZNF692Q9BU19 519 aaPredicted RBP17.9■□□□□ 0.46
RTN3-210ENST00000540798 IL16Q14005 1332 aa17.89■□□□□ 0.46
RTN3-210ENST00000540798 MYH16Q9H6N6 1097 aa17.89■□□□□ 0.46
RTN3-210ENST00000540798 TBX22Q9Y458 520 aa17.89■□□□□ 0.46
RTN3-210ENST00000540798 EID1Q9Y6B2 187 aa17.89■□□□□ 0.46
RTN3-210ENST00000540798 NCKAP5LQ9HCH0 1330 aa17.89■□□□□ 0.45
RTN3-210ENST00000540798 MSH5O43196 834 aa17.89■□□□□ 0.45
RTN3-210ENST00000540798 PNNQ9H307 717 aaKnown RBP17.89■□□□□ 0.45
RTN3-210ENST00000540798 NME9Q86XW9 330 aa17.89■□□□□ 0.45
RTN3-210ENST00000540798 FCHSD2O94868 740 aa17.88■□□□□ 0.45
RTN3-210ENST00000540798 CENPQQ7L2Z9 268 aaPredicted RBP17.88■□□□□ 0.45
RTN3-210ENST00000540798 CEP170BQ9Y4F5 1589 aaPredicted RBP17.88■□□□□ 0.45
RTN3-210ENST00000540798 PLEKHG3A1L390 1219 aa17.87■□□□□ 0.45
RTN3-210ENST00000540798 CT47B1P0C2W7 299 aaPredicted RBP17.87■□□□□ 0.45
RTN3-210ENST00000540798 RSPH6AQ9H0K4 717 aa17.87■□□□□ 0.45
RTN3-210ENST00000540798 ZNF142P52746 1687 aaPredicted RBP17.86■□□□□ 0.45
RTN3-210ENST00000540798 MAPK8IP3Q9UPT6 1336 aa17.86■□□□□ 0.45
RTN3-210ENST00000540798 SSH2Q76I76 1423 aa17.86■□□□□ 0.45
RTN3-210ENST00000540798 OVOS2A0A0J9YW53 1432 aa17.85■□□□□ 0.45
RTN3-210ENST00000540798 OVOS2Q6IE36 1432 aa17.85■□□□□ 0.45
RTN3-210ENST00000540798 THEMISQ8N1K5 641 aaPredicted RBP17.85■□□□□ 0.45
RTN3-210ENST00000540798 IL13P35225 146 aa17.85■□□□□ 0.45
RTN3-210ENST00000540798 USP6P35125 1406 aa17.84■□□□□ 0.45
RTN3-210ENST00000540798 FBLN1P23142 703 aa17.84■□□□□ 0.45
RTN3-210ENST00000540798 ZRANB1Q9UGI0 708 aa17.84■□□□□ 0.45
RTN3-210ENST00000540798 SLC26A8Q96RN1 970 aa17.84■□□□□ 0.45
RTN3-210ENST00000540798 COG3Q96JB2 828 aa17.83■□□□□ 0.45
RTN3-210ENST00000540798 EMILIN1Q9Y6C2 1016 aa17.83■□□□□ 0.45
RTN3-210ENST00000540798 RGPD8O14715 1765 aaPredicted RBP17.83■□□□□ 0.44
RTN3-210ENST00000540798 AMOTL2Q9Y2J4 779 aa17.83■□□□□ 0.44
RTN3-210ENST00000540798 DLG5Q8TDM6 1919 aa17.82■□□□□ 0.44
RTN3-210ENST00000540798 TTC21BQ7Z4L5 1316 aa17.82■□□□□ 0.44
RTN3-210ENST00000540798 PIK3R4Q99570 1358 aa17.82■□□□□ 0.44
RTN3-210ENST00000540798 ADAMTSL3P82987 1691 aa17.81■□□□□ 0.44
RTN3-210ENST00000540798 ACEP12821 1306 aa17.81■□□□□ 0.44
RTN3-210ENST00000540798 RGPD1P0DJD0 1748 aa17.81■□□□□ 0.44
RTN3-210ENST00000540798 RIPK4P57078 832 aa17.81■□□□□ 0.44
RTN3-210ENST00000540798 AAMPQ13685 434 aa17.81■□□□□ 0.44
RTN3-210ENST00000540798 PEAK1Q9H792 1746 aa17.81■□□□□ 0.44
RTN3-210ENST00000540798 FMN2Q9NZ56 1722 aa17.8■□□□□ 0.44
RTN3-210ENST00000540798 USP31Q70CQ4 1352 aa17.8■□□□□ 0.44
RTN3-210ENST00000540798 BACH2Q9BYV9 841 aa17.8■□□□□ 0.44
RTN3-210ENST00000540798 USP54Q70EL1 1684 aa17.8■□□□□ 0.44
RTN3-210ENST00000540798 PRKAR2BP31323 418 aa17.79■□□□□ 0.44
RTN3-210ENST00000540798 CHD2O14647 1828 aaKnown RBP17.79■□□□□ 0.44
RTN3-210ENST00000540798 PDE4AP27815 886 aa17.78■□□□□ 0.44
RTN3-210ENST00000540798 PANK1Q8TE04 598 aa17.78■□□□□ 0.44
RTN3-210ENST00000540798 TSR2Q969E8 191 aaKnown RBP17.78■□□□□ 0.44
RTN3-210ENST00000540798 ANKARQ7Z5J8 1434 aa17.77■□□□□ 0.44
RTN3-210ENST00000540798 PPM1GO15355 546 aaPredicted RBP17.77■□□□□ 0.44
RTN3-210ENST00000540798 CLUAP1Q96AJ1 413 aa17.77■□□□□ 0.44
RTN3-210ENST00000540798 NFE2L2Q16236 605 aa17.77■□□□□ 0.43
RTN3-210ENST00000540798 CANXP27824 592 aaKnown RBP17.76■□□□□ 0.43
RTN3-210ENST00000540798 EXOSC9Q06265 439 aaKnown RBP17.76■□□□□ 0.43
RTN3-210ENST00000540798 COG6Q9Y2V7 657 aa17.76■□□□□ 0.43
RTN3-210ENST00000540798 MARF1Q9Y4F3 1742 aaKnown RBP17.76■□□□□ 0.43
RTN3-210ENST00000540798 PIK3C2AO00443 1686 aa17.76■□□□□ 0.43
RTN3-210ENST00000540798 RLBP1P12271 317 aa17.76■□□□□ 0.43
RTN3-210ENST00000540798 PHACTR3Q96KR7 559 aa17.76■□□□□ 0.43
RTN3-210ENST00000540798 RRS1Q15050 365 aaKnown RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms