RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 AMOTQ4VCS5 1084 aa17.43■□□□□ 0.38
COLCA1-204ENST00000540738 RRP1P56182 461 aaKnown RBP17.43■□□□□ 0.38
COLCA1-204ENST00000540738 RRS1Q15050 365 aaKnown RBP17.43■□□□□ 0.38
COLCA1-204ENST00000540738 GNL3LQ9NVN8 582 aaKnown RBP17.43■□□□□ 0.38
COLCA1-204ENST00000540738 ADAMTS8Q9UP79 889 aa17.43■□□□□ 0.38
COLCA1-204ENST00000540738 RNF20Q5VTR2 975 aa17.43■□□□□ 0.38
COLCA1-204ENST00000540738 DUOX2Q9NRD8 1548 aa17.43■□□□□ 0.38
COLCA1-204ENST00000540738 TMOD3Q9NYL9 352 aa17.43■□□□□ 0.38
COLCA1-204ENST00000540738 NPHP3Q7Z494 1330 aa17.42■□□□□ 0.38
COLCA1-204ENST00000540738 KIAA0556O60303 1618 aa17.42■□□□□ 0.38
COLCA1-204ENST00000540738 NUP153P49790 1475 aaKnown RBP17.42■□□□□ 0.38
COLCA1-204ENST00000540738 TWISTNBQ3B726 338 aaPredicted RBP17.42■□□□□ 0.38
COLCA1-204ENST00000540738 NOS1P29475 1434 aa17.42■□□□□ 0.38
COLCA1-204ENST00000540738 CHAF1AQ13111 956 aaPredicted RBP17.42■□□□□ 0.38
COLCA1-204ENST00000540738 EXOC5O00471 708 aa17.41■□□□□ 0.38
COLCA1-204ENST00000540738 FCHSD2O94868 740 aa17.41■□□□□ 0.38
COLCA1-204ENST00000540738 TBC1D2BQ9UPU7 963 aa17.41■□□□□ 0.38
COLCA1-204ENST00000540738 REC8O95072 547 aa17.41■□□□□ 0.38
COLCA1-204ENST00000540738 ERICH2A1L162 156 aa17.41■□□□□ 0.38
COLCA1-204ENST00000540738 ADGRF5Q8IZF2 1346 aa17.41■□□□□ 0.38
COLCA1-204ENST00000540738 DHX16O60231 1041 aaKnown RBP17.41■□□□□ 0.38
COLCA1-204ENST00000540738 ZNF652Q9Y2D9 606 aa17.41■□□□□ 0.38
COLCA1-204ENST00000540738 C14orf93Q9H972 538 aaKnown RBP17.4■□□□□ 0.38
COLCA1-204ENST00000540738 PLIN1O60240 522 aa17.4■□□□□ 0.38
COLCA1-204ENST00000540738 SPRYD3Q8NCJ5 442 aa17.4■□□□□ 0.38
COLCA1-204ENST00000540738 CCDC27Q2M243 656 aa17.4■□□□□ 0.38
COLCA1-204ENST00000540738 NSD3Q9BZ95 1437 aa17.4■□□□□ 0.38
COLCA1-204ENST00000540738 BTBD11A6QL63 1104 aa17.4■□□□□ 0.38
COLCA1-204ENST00000540738 SYAP1Q96A49 352 aaPredicted RBP17.39■□□□□ 0.37
COLCA1-204ENST00000540738 ITSN2Q9NZM3 1697 aa17.39■□□□□ 0.37
COLCA1-204ENST00000540738 CNNM1Q9NRU3 951 aa17.39■□□□□ 0.37
COLCA1-204ENST00000540738 FAM184AQ8NB25 1140 aa17.39■□□□□ 0.37
COLCA1-204ENST00000540738 L1TD1Q5T7N2 865 aaKnown RBP17.38■□□□□ 0.37
COLCA1-204ENST00000540738 WDR97A6NE52 1622 aa17.38■□□□□ 0.37
COLCA1-204ENST00000540738 GNAT3A8MTJ3 354 aa17.38■□□□□ 0.37
COLCA1-204ENST00000540738 CLASRPQ8N2M8 674 aaKnown RBP17.38■□□□□ 0.37
COLCA1-204ENST00000540738 ERC1Q8IUD2 1116 aa17.38■□□□□ 0.37
COLCA1-204ENST00000540738 NOP58Q9Y2X3 529 aaKnown RBP17.38■□□□□ 0.37
COLCA1-204ENST00000540738 TPM4P67936 248 aa17.37■□□□□ 0.37
COLCA1-204ENST00000540738 SF3A1Q15459 793 aaKnown RBP17.37■□□□□ 0.37
COLCA1-204ENST00000540738 NINLQ9Y2I6 1382 aa17.37■□□□□ 0.37
COLCA1-204ENST00000540738 DNTTIP2Q5QJE6 756 aaKnown RBP17.37■□□□□ 0.37
COLCA1-204ENST00000540738 KIAA2012Q0VF49 1180 aa17.36■□□□□ 0.37
COLCA1-204ENST00000540738 TRIM29Q14134 588 aa17.36■□□□□ 0.37
COLCA1-204ENST00000540738 WASHC4Q2M389 1173 aa17.36■□□□□ 0.37
COLCA1-204ENST00000540738 H3BQV1 296 aa17.36■□□□□ 0.37
COLCA1-204ENST00000540738 ZPR1O75312 459 aa17.36■□□□□ 0.37
COLCA1-204ENST00000540738 IFFO2Q5TF58 517 aa17.36■□□□□ 0.37
COLCA1-204ENST00000540738 CT47B1P0C2W7 299 aaPredicted RBP17.36■□□□□ 0.37
COLCA1-204ENST00000540738 SYCP2Q9BX26 1530 aa17.35■□□□□ 0.37
COLCA1-204ENST00000540738 CRBNQ96SW2 442 aa17.35■□□□□ 0.37
COLCA1-204ENST00000540738 MPHOSPH8Q99549 860 aa17.35■□□□□ 0.37
COLCA1-204ENST00000540738 RIMS2Q9UQ26 1411 aa17.35■□□□□ 0.37
COLCA1-204ENST00000540738 CPLX1O14810 134 aa17.35■□□□□ 0.37
COLCA1-204ENST00000540738 NOL8Q76FK4 1167 aaKnown RBP17.35■□□□□ 0.37
COLCA1-204ENST00000540738 UHRF1BP1Q6BDS2 1440 aa17.35■□□□□ 0.37
COLCA1-204ENST00000540738 CCT4P50991 539 aaKnown RBP17.34■□□□□ 0.37
COLCA1-204ENST00000540738 C19orf44Q9H6X5 657 aa17.34■□□□□ 0.37
COLCA1-204ENST00000540738 SLC4A2P04920 1241 aa17.34■□□□□ 0.37
COLCA1-204ENST00000540738 SRCIN1Q9C0H9 1055 aa17.34■□□□□ 0.37
COLCA1-204ENST00000540738 EXOSC9Q06265 439 aaKnown RBP17.34■□□□□ 0.37
COLCA1-204ENST00000540738 HSPA2P54652 639 aa17.33■□□□□ 0.37
COLCA1-204ENST00000540738 CTTNBP2Q8WZ74 1663 aa17.33■□□□□ 0.37
COLCA1-204ENST00000540738 RALYLQ86SE5 291 aaKnown RBP17.33■□□□□ 0.36
COLCA1-204ENST00000540738 WDR63Q8IWG1 891 aa17.33■□□□□ 0.36
COLCA1-204ENST00000540738 ZMYM3Q14202 1370 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 SLC3A2P08195 630 aaKnown RBP17.32■□□□□ 0.36
COLCA1-204ENST00000540738 SURF6O75683 361 aaKnown RBP17.32■□□□□ 0.36
COLCA1-204ENST00000540738 MYL6BP14649 208 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 NFE2L2Q16236 605 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 CCDC158Q5M9N0 1113 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 NFXL1Q6ZNB6 911 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 NME9Q86XW9 330 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 DRC7Q8IY82 874 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 SCAF11Q99590 1463 aaKnown RBP17.32■□□□□ 0.36
COLCA1-204ENST00000540738 CCDC57Q2TAC2 916 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 TRAPPC8Q9Y2L5 1435 aa17.32■□□□□ 0.36
COLCA1-204ENST00000540738 NCBP3Q53F19 620 aaKnown RBP17.31■□□□□ 0.36
COLCA1-204ENST00000540738 LMTK3Q96Q04 1460 aa17.31■□□□□ 0.36
COLCA1-204ENST00000540738 GNAI2P04899 355 aa17.31■□□□□ 0.36
COLCA1-204ENST00000540738 ATP6V1DQ9Y5K8 247 aa17.31■□□□□ 0.36
COLCA1-204ENST00000540738 TTC21BQ7Z4L5 1316 aa17.31■□□□□ 0.36
COLCA1-204ENST00000540738 ANO2Q9NQ90 1003 aa17.31■□□□□ 0.36
COLCA1-204ENST00000540738 ATP10AO60312 1499 aa17.3■□□□□ 0.36
COLCA1-204ENST00000540738 ZNF428Q96B54 188 aa17.3■□□□□ 0.36
COLCA1-204ENST00000540738 TTC21AQ8NDW8 1320 aa17.3■□□□□ 0.36
COLCA1-204ENST00000540738 CCAR1Q8IX12 1150 aaKnown RBP17.3■□□□□ 0.36
COLCA1-204ENST00000540738 FYB1O15117 783 aa17.29■□□□□ 0.36
COLCA1-204ENST00000540738 TEX13AQ9BXU3 409 aaPredicted RBP17.29■□□□□ 0.36
COLCA1-204ENST00000540738 NSD2O96028 1365 aa17.29■□□□□ 0.36
COLCA1-204ENST00000540738 EXOC6Q8TAG9 804 aa17.28■□□□□ 0.36
COLCA1-204ENST00000540738 ACEP12821 1306 aa17.28■□□□□ 0.36
COLCA1-204ENST00000540738 HSP90AB3PQ58FF7 597 aa17.28■□□□□ 0.36
COLCA1-204ENST00000540738 INTS3Q68E01 1043 aaKnown RBP17.28■□□□□ 0.36
COLCA1-204ENST00000540738 LRRC59Q96AG4 307 aaKnown RBP17.28■□□□□ 0.36
COLCA1-204ENST00000540738 PTCD1O75127 700 aaKnown RBP17.28■□□□□ 0.36
COLCA1-204ENST00000540738 IGHMBP2P38935 993 aaKnown RBP17.28■□□□□ 0.36
COLCA1-204ENST00000540738 BICDL1Q6ZP65 573 aa17.28■□□□□ 0.36
COLCA1-204ENST00000540738 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.28■□□□□ 0.36
COLCA1-204ENST00000540738 NCKAP5LQ9HCH0 1330 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms