RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 OVOS2A0A0J9YW53 1432 aa14.62□□□□□ -0.07
VPS33A-204ENST00000540669 PIP4K2BP78356 416 aa14.62□□□□□ -0.07
VPS33A-204ENST00000540669 OVOS2Q6IE36 1432 aa14.62□□□□□ -0.07
VPS33A-204ENST00000540669 CARD14Q9BXL6 1004 aa14.62□□□□□ -0.07
VPS33A-204ENST00000540669 NSD3Q9BZ95 1437 aa14.62□□□□□ -0.07
VPS33A-204ENST00000540669 CABP1Q9NZU7 370 aa14.62□□□□□ -0.07
VPS33A-204ENST00000540669 COL22A1Q8NFW1 1626 aaPredicted RBP14.62□□□□□ -0.07
VPS33A-204ENST00000540669 BRINP3Q76B58 766 aa14.61□□□□□ -0.07
VPS33A-204ENST00000540669 ACEP12821 1306 aa14.61□□□□□ -0.07
VPS33A-204ENST00000540669 ORAI2Q96SN7 254 aa14.6□□□□□ -0.07
VPS33A-204ENST00000540669 SLAIN2Q9P270 581 aa14.6□□□□□ -0.07
VPS33A-204ENST00000540669 PHF8Q9UPP1 1060 aa14.6□□□□□ -0.07
VPS33A-204ENST00000540669 NSD2O96028 1365 aa14.6□□□□□ -0.07
VPS33A-204ENST00000540669 PHRF1Q9P1Y6 1649 aaKnown RBP14.59□□□□□ -0.07
VPS33A-204ENST00000540669 AMER1Q5JTC6 1135 aaPredicted RBP14.59□□□□□ -0.07
VPS33A-204ENST00000540669 SLIT3O75094 1523 aa14.59□□□□□ -0.07
VPS33A-204ENST00000540669 NUTM2FA1L443 756 aa14.58□□□□□ -0.08
VPS33A-204ENST00000540669 PANK3Q9H999 370 aa14.58□□□□□ -0.08
VPS33A-204ENST00000540669 TERF2IPQ9NYB0 399 aa14.58□□□□□ -0.08
VPS33A-204ENST00000540669 SOS2Q07890 1332 aaPredicted RBP14.58□□□□□ -0.08
VPS33A-204ENST00000540669 SBNO1A3KN83 1393 aa14.58□□□□□ -0.08
VPS33A-204ENST00000540669 USP31Q70CQ4 1352 aa14.58□□□□□ -0.08
VPS33A-204ENST00000540669 KTN1Q86UP2 1357 aaKnown RBP14.58□□□□□ -0.08
VPS33A-204ENST00000540669 DDX10Q13206 875 aaKnown RBP14.57□□□□□ -0.08
VPS33A-204ENST00000540669 PHLPP1O60346 1717 aa14.57□□□□□ -0.08
VPS33A-204ENST00000540669 PARD3Q8TEW0 1356 aa14.57□□□□□ -0.08
VPS33A-204ENST00000540669 SHPRHQ149N8 1683 aa14.56□□□□□ -0.08
VPS33A-204ENST00000540669 ZNF692Q9BU19 519 aaPredicted RBP14.56□□□□□ -0.08
VPS33A-204ENST00000540669 TNS3Q68CZ2 1445 aa14.56□□□□□ -0.08
VPS33A-204ENST00000540669 NFAT5O94916 1531 aa14.56□□□□□ -0.08
VPS33A-204ENST00000540669 ESCO1Q5FWF5 840 aa14.55□□□□□ -0.08
VPS33A-204ENST00000540669 NPHP3Q7Z494 1330 aa14.55□□□□□ -0.08
VPS33A-204ENST00000540669 TTC21AQ8NDW8 1320 aa14.55□□□□□ -0.08
VPS33A-204ENST00000540669 SMG6Q86US8 1419 aaKnown RBP14.55□□□□□ -0.08
VPS33A-204ENST00000540669 HDGFL2Q7Z4V5 671 aaPredicted RBP14.54□□□□□ -0.08
VPS33A-204ENST00000540669 PMFBP1Q8TBY8 1022 aa14.54□□□□□ -0.08
VPS33A-204ENST00000540669 TMC1Q8TDI8 760 aa14.54□□□□□ -0.08
VPS33A-204ENST00000540669 TTC21BQ7Z4L5 1316 aa14.54□□□□□ -0.08
VPS33A-204ENST00000540669 USP19O94966 1318 aa14.52□□□□□ -0.08
VPS33A-204ENST00000540669 POLR3GLQ9BT43 218 aa14.52□□□□□ -0.09
VPS33A-204ENST00000540669 CGNL1Q0VF96 1302 aa14.51□□□□□ -0.09
VPS33A-204ENST00000540669 ABCC6O95255 1503 aa14.51□□□□□ -0.09
VPS33A-204ENST00000540669 SPATA31A3Q5VYP0 1347 aa14.5□□□□□ -0.09
VPS33A-204ENST00000540669 FYB1O15117 783 aa14.5□□□□□ -0.09
VPS33A-204ENST00000540669 FOXO3O43524 673 aa14.5□□□□□ -0.09
VPS33A-204ENST00000540669 NGDNQ8NEJ9 315 aaKnown RBP14.5□□□□□ -0.09
VPS33A-204ENST00000540669 PEAK1Q9H792 1746 aa14.49□□□□□ -0.09
VPS33A-204ENST00000540669 AATKQ6ZMQ8 1374 aa14.48□□□□□ -0.09
VPS33A-204ENST00000540669 LTN1O94822 1766 aa14.48□□□□□ -0.09
VPS33A-204ENST00000540669 ARHGEF10O15013 1369 aa14.47□□□□□ -0.09
VPS33A-204ENST00000540669 COL18A1P39060 1754 aa14.47□□□□□ -0.09
VPS33A-204ENST00000540669 LMO7Q8WWI1 1683 aa14.47□□□□□ -0.09
VPS33A-204ENST00000540669 COL3A1P02461 1466 aaPredicted RBP14.47□□□□□ -0.09
VPS33A-204ENST00000540669 KRT28Q7Z3Y7 464 aa14.47□□□□□ -0.09
VPS33A-204ENST00000540669 NME9Q86XW9 330 aa14.47□□□□□ -0.09
VPS33A-204ENST00000540669 DDX17Q92841 729 aaKnown RBP14.47□□□□□ -0.09
VPS33A-204ENST00000540669 KNSTRNQ9Y448 316 aa14.47□□□□□ -0.09
VPS33A-204ENST00000540669 PNPLA6Q8IY17 1366 aa14.47□□□□□ -0.09
VPS33A-204ENST00000540669 PRKRIP1Q9H875 184 aaPredicted RBP14.46□□□□□ -0.09
VPS33A-204ENST00000540669 MAP2P11137 1827 aaKnown RBP14.45□□□□□ -0.1
VPS33A-204ENST00000540669 CDK12Q9NYV4 1490 aaPredicted RBP14.44□□□□□ -0.1
VPS33A-204ENST00000540669 HSPA1LP34931 641 aa14.44□□□□□ -0.1
VPS33A-204ENST00000540669 DIEXFQ68CQ4 756 aaKnown RBP14.44□□□□□ -0.1
VPS33A-204ENST00000540669 CAMTA1Q9Y6Y1 1673 aa14.44□□□□□ -0.1
VPS33A-204ENST00000540669 PSME1Q06323 249 aa14.43□□□□□ -0.1
VPS33A-204ENST00000540669 ZRANB1Q9UGI0 708 aa14.43□□□□□ -0.1
VPS33A-204ENST00000540669 INSRP06213 1382 aa14.43□□□□□ -0.1
VPS33A-204ENST00000540669 RGPD1P0DJD0 1748 aa14.43□□□□□ -0.1
VPS33A-204ENST00000540669 XPCQ01831 940 aaPredicted RBP14.42□□□□□ -0.1
VPS33A-204ENST00000540669 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.42□□□□□ -0.1
VPS33A-204ENST00000540669 GGNBP2Q9H3C7 697 aa14.42□□□□□ -0.1
VPS33A-204ENST00000540669 CPDO75976 1380 aa14.42□□□□□ -0.1
VPS33A-204ENST00000540669 KIF24Q5T7B8 1368 aa14.42□□□□□ -0.1
VPS33A-204ENST00000540669 RALBP1Q15311 655 aa14.41□□□□□ -0.1
VPS33A-204ENST00000540669 RTL1A6NKG5 1358 aa14.4□□□□□ -0.1
VPS33A-204ENST00000540669 NRAPQ86VF7 1730 aa14.39□□□□□ -0.11
VPS33A-204ENST00000540669 PLCH1Q4KWH8 1693 aa14.39□□□□□ -0.11
VPS33A-204ENST00000540669 FAM208AQ9UK61 1670 aaKnown RBP14.39□□□□□ -0.11
VPS33A-204ENST00000540669 MYBBP1AQ9BQG0 1328 aaKnown RBP14.39□□□□□ -0.11
VPS33A-204ENST00000540669 COL14A1Q05707 1796 aaKnown RBP14.38□□□□□ -0.11
VPS33A-204ENST00000540669 CC2D1BQ5T0F9 858 aaKnown RBP14.38□□□□□ -0.11
VPS33A-204ENST00000540669 ABTB2Q8N961 1025 aa14.38□□□□□ -0.11
VPS33A-204ENST00000540669 NWD2Q9ULI1 1742 aa14.38□□□□□ -0.11
VPS33A-204ENST00000540669 LRP6O75581 1613 aa14.37□□□□□ -0.11
VPS33A-204ENST00000540669 JCADQ9P266 1359 aa14.37□□□□□ -0.11
VPS33A-204ENST00000540669 PPP2R1AP30153 589 aa14.37□□□□□ -0.11
VPS33A-204ENST00000540669 NLRP13Q86W25 1043 aa14.37□□□□□ -0.11
VPS33A-204ENST00000540669 LRRC59Q96AG4 307 aaKnown RBP14.37□□□□□ -0.11
VPS33A-204ENST00000540669 COG3Q96JB2 828 aa14.37□□□□□ -0.11
VPS33A-204ENST00000540669 NCAPD2Q15021 1401 aa14.37□□□□□ -0.11
VPS33A-204ENST00000540669 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.36□□□□□ -0.11
VPS33A-204ENST00000540669 RGPD5Q99666 1765 aa14.36□□□□□ -0.11
VPS33A-204ENST00000540669 NLRP6P59044 892 aa14.35□□□□□ -0.11
VPS33A-204ENST00000540669 ANP32CO43423 234 aa14.34□□□□□ -0.11
VPS33A-204ENST00000540669 PAK3O75914 559 aaPredicted RBP14.34□□□□□ -0.11
VPS33A-204ENST00000540669 MORC1Q86VD1 984 aa14.34□□□□□ -0.11
VPS33A-204ENST00000540669 POLKQ9UBT6 870 aa14.34□□□□□ -0.11
VPS33A-204ENST00000540669 MAP3K19Q56UN5 1328 aa14.34□□□□□ -0.11
VPS33A-204ENST00000540669 BLMP54132 1417 aaPredicted RBP14.33□□□□□ -0.11
VPS33A-204ENST00000540669 GCP02774 474 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms