RNA–Protein interactions for RNA: ENST00000540236.3

PBX1-212, Transcript of PBX homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene PBX1, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-212ENST00000540236 PPP1R9BQ96SB3 815 aa13.29□□□□□ -0.28
PBX1-212ENST00000540236 IPO8O15397 1037 aaKnown RBP13.28□□□□□ -0.28
PBX1-212ENST00000540236 SMC2O95347 1197 aa13.28□□□□□ -0.28
PBX1-212ENST00000540236 PKP1Q13835 747 aa13.28□□□□□ -0.28
PBX1-212ENST00000540236 CKAP2LQ8IYA6 745 aa13.28□□□□□ -0.28
PBX1-212ENST00000540236 TTC31Q49AM3 519 aaPredicted RBP13.28□□□□□ -0.28
PBX1-212ENST00000540236 OS9Q13438 667 aaPredicted RBP13.28□□□□□ -0.28
PBX1-212ENST00000540236 ZNF500O60304 480 aaPredicted RBP13.28□□□□□ -0.28
PBX1-212ENST00000540236 CT47A1Q5JQC4 288 aaPredicted RBP13.28□□□□□ -0.28
PBX1-212ENST00000540236 NAA30Q147X3 362 aaPredicted RBP13.27□□□□□ -0.29
PBX1-212ENST00000540236 ISM2Q6H9L7 571 aa13.27□□□□□ -0.29
PBX1-212ENST00000540236 ELF2Q15723 593 aa13.27□□□□□ -0.29
PBX1-212ENST00000540236 CCDC102AQ96A19 550 aa13.27□□□□□ -0.29
PBX1-212ENST00000540236 EIF3AQ14152 1382 aaKnown RBP13.27□□□□□ -0.29
PBX1-212ENST00000540236 GYS2P54840 703 aa13.27□□□□□ -0.29
PBX1-212ENST00000540236 PDILTQ8N807 584 aa13.27□□□□□ -0.29
PBX1-212ENST00000540236 DDX19BQ9UMR2 479 aa13.27□□□□□ -0.29
PBX1-212ENST00000540236 CALRP27797 417 aaKnown RBP13.26□□□□□ -0.29
PBX1-212ENST00000540236 PTPN14Q15678 1187 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 TMCO3Q6UWJ1 677 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 CHD1LQ86WJ1 897 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 MNAT1P51948 309 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 TULP1O00294 542 aaPredicted RBP13.26□□□□□ -0.29
PBX1-212ENST00000540236 KDM4AO75164 1064 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 E2F4Q16254 413 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 RSPH4AQ5TD94 716 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 PLEKHA4Q9H4M7 779 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 RABEP2Q9H5N1 569 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 PDE6BP35913 854 aa13.26□□□□□ -0.29
PBX1-212ENST00000540236 CFDP1Q9UEE9 299 aaPredicted RBP13.26□□□□□ -0.29
PBX1-212ENST00000540236 FAM212AQ96EL1 285 aa13.25□□□□□ -0.29
PBX1-212ENST00000540236 ZSWIM4Q9H7M6 989 aa13.25□□□□□ -0.29
PBX1-212ENST00000540236 INTS3Q68E01 1043 aaKnown RBP13.25□□□□□ -0.29
PBX1-212ENST00000540236 MICALL1Q8N3F8 863 aa13.25□□□□□ -0.29
PBX1-212ENST00000540236 SMARCA5O60264 1052 aaPredicted RBP13.25□□□□□ -0.29
PBX1-212ENST00000540236 TEX2Q8IWB9 1127 aa13.25□□□□□ -0.29
PBX1-212ENST00000540236 CLIP2Q9UDT6 1046 aa13.25□□□□□ -0.29
PBX1-212ENST00000540236 RABEP1Q15276 862 aa13.24□□□□□ -0.29
PBX1-212ENST00000540236 TERF1P54274 439 aa13.24□□□□□ -0.29
PBX1-212ENST00000540236 CCDC186Q7Z3E2 898 aa13.24□□□□□ -0.29
PBX1-212ENST00000540236 SPINK5Q9NQ38 1064 aaPredicted RBP13.24□□□□□ -0.29
PBX1-212ENST00000540236 MVPQ14764 893 aaKnown RBP13.24□□□□□ -0.29
PBX1-212ENST00000540236 SMC3Q9UQE7 1217 aa13.24□□□□□ -0.29
PBX1-212ENST00000540236 TBC1D9Q6ZT07 1266 aa13.24□□□□□ -0.29
PBX1-212ENST00000540236 GPT2Q8TD30 523 aa13.23□□□□□ -0.29
PBX1-212ENST00000540236 DDX54Q8TDD1 881 aaKnown RBP13.23□□□□□ -0.29
PBX1-212ENST00000540236 PYCARDQ9ULZ3 195 aa13.23□□□□□ -0.29
PBX1-212ENST00000540236 CNPY2Q9Y2B0 182 aa13.23□□□□□ -0.29
PBX1-212ENST00000540236 TPM3P06753 285 aa13.23□□□□□ -0.29
PBX1-212ENST00000540236 TSPY4P0CV99 314 aa13.23□□□□□ -0.29
PBX1-212ENST00000540236 TSPY10P0CW01 314 aa13.23□□□□□ -0.29
PBX1-212ENST00000540236 PDE3AQ14432 1141 aa13.23□□□□□ -0.29
PBX1-212ENST00000540236 CD2BP2O95400 341 aaKnown RBP13.23□□□□□ -0.29
PBX1-212ENST00000540236 EXOSC9Q06265 439 aaKnown RBP13.23□□□□□ -0.29
PBX1-212ENST00000540236 GADD45BO75293 160 aaPredicted RBP13.22□□□□□ -0.29
PBX1-212ENST00000540236 RLBP1P12271 317 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 USP48Q86UV5 1035 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 TMEM63CQ9P1W3 806 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 ANKRD65E5RJM6 399 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 ZNF710Q8N1W2 664 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 USP19O94966 1318 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 NUP155O75694 1391 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 NSFL1CQ9UNZ2 370 aaKnown RBP13.22□□□□□ -0.29
PBX1-212ENST00000540236 HSP90B2PQ58FF3 399 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 PIBF1Q8WXW3 757 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 FEZ1Q99689 392 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 FGD6Q6ZV73 1430 aa13.22□□□□□ -0.29
PBX1-212ENST00000540236 HNRNPH2P55795 449 aaKnown RBP13.21□□□□□ -0.29
PBX1-212ENST00000540236 PPARDQ03181 441 aa13.21□□□□□ -0.29
PBX1-212ENST00000540236 TXLNBQ8N3L3 684 aa13.21□□□□□ -0.29
PBX1-212ENST00000540236 SLC26A8Q96RN1 970 aa13.21□□□□□ -0.29
PBX1-212ENST00000540236 LRPPRCP42704 1394 aaKnown RBP13.21□□□□□ -0.29
PBX1-212ENST00000540236 CCDC192P0DO97 292 aa13.21□□□□□ -0.29
PBX1-212ENST00000540236 TNMDQ9H2S6 317 aa13.21□□□□□ -0.29
PBX1-212ENST00000540236 FRMD3A2A2Y4 597 aa13.21□□□□□ -0.29
PBX1-212ENST00000540236 BAZ1AQ9NRL2 1556 aaPredicted RBP13.21□□□□□ -0.29
PBX1-212ENST00000540236 AQRO60306 1485 aaKnown RBP eCLIP13.21□□□□□ -0.3
PBX1-212ENST00000540236 TMEM57Q8N5G2 664 aa13.21□□□□□ -0.3
PBX1-212ENST00000540236 ZNF397Q8NF99 534 aaPredicted RBP13.21□□□□□ -0.3
PBX1-212ENST00000540236 NCAPD3P42695 1498 aa13.21□□□□□ -0.3
PBX1-212ENST00000540236 ZNF644Q9H582 1327 aaPredicted RBP13.2□□□□□ -0.3
PBX1-212ENST00000540236 HS1BP3Q53T59 392 aa13.2□□□□□ -0.3
PBX1-212ENST00000540236 AXDND1Q5T1B0 1012 aaPredicted RBP13.2□□□□□ -0.3
PBX1-212ENST00000540236 CARMIL1Q5VZK9 1371 aa13.2□□□□□ -0.3
PBX1-212ENST00000540236 DNAAF4Q8WXU2 420 aa13.2□□□□□ -0.3
PBX1-212ENST00000540236 H3BQV1 296 aa13.2□□□□□ -0.3
PBX1-212ENST00000540236 URI1O94763 535 aaPredicted RBP13.2□□□□□ -0.3
PBX1-212ENST00000540236 IFFO2Q5TF58 517 aa13.2□□□□□ -0.3
PBX1-212ENST00000540236 CCDC183Q5T5S1 534 aa13.2□□□□□ -0.3
PBX1-212ENST00000540236 CCDC9Q9Y3X0 531 aaKnown RBP13.2□□□□□ -0.3
PBX1-212ENST00000540236 GABPB1Q06547 395 aaPredicted RBP13.2□□□□□ -0.3
PBX1-212ENST00000540236 BMS1Q14692 1282 aaKnown RBP13.2□□□□□ -0.3
PBX1-212ENST00000540236 LMBRD1Q9NUN5 540 aa13.2□□□□□ -0.3
PBX1-212ENST00000540236 CLGNO14967 610 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 UBXN4Q92575 508 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 MYCBPQ99417 103 aaPredicted RBP13.19□□□□□ -0.3
PBX1-212ENST00000540236 CUX2O14529 1486 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 PHACTR2O75167 634 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 CDCA8Q53HL2 280 aa13.19□□□□□ -0.3
PBX1-212ENST00000540236 CWC22Q9HCG8 908 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms