RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 SMC4Q9NTJ3 1288 aa25.74■■□□□ 1.71
TMEM260-203ENST00000539559 EXOSC9Q06265 439 aaKnown RBP25.74■■□□□ 1.71
TMEM260-203ENST00000539559 ADGRB1O14514 1584 aa25.74■■□□□ 1.71
TMEM260-203ENST00000539559 SBNO2Q9Y2G9 1366 aa25.74■■□□□ 1.71
TMEM260-203ENST00000539559 C22orf23Q9BZE7 217 aa25.73■■□□□ 1.71
TMEM260-203ENST00000539559 MYO3AQ8NEV4 1616 aa25.73■■□□□ 1.71
TMEM260-203ENST00000539559 U2SURPO15042 1029 aaKnown RBP25.73■■□□□ 1.71
TMEM260-203ENST00000539559 ZFYVE9O95405 1425 aa25.73■■□□□ 1.71
TMEM260-203ENST00000539559 MLECQ14165 292 aa25.72■■□□□ 1.71
TMEM260-203ENST00000539559 ITPRIPQ8IWB1 547 aa25.72■■□□□ 1.71
TMEM260-203ENST00000539559 PANK2Q9BZ23 570 aa25.72■■□□□ 1.71
TMEM260-203ENST00000539559 TRIM27P14373 513 aa25.71■■□□□ 1.71
TMEM260-203ENST00000539559 CABP2Q9NPB3 220 aa25.71■■□□□ 1.71
TMEM260-203ENST00000539559 TMEM131LA2VDJ0 1609 aa25.71■■□□□ 1.71
TMEM260-203ENST00000539559 MCM4P33991 863 aa25.7■■□□□ 1.7
TMEM260-203ENST00000539559 CLTCQ00610 1675 aaKnown RBP25.7■■□□□ 1.7
TMEM260-203ENST00000539559 XRCC6P12956 609 aaKnown RBP eCLIP25.7■■□□□ 1.7
TMEM260-203ENST00000539559 CCDC27Q2M243 656 aa25.7■■□□□ 1.7
TMEM260-203ENST00000539559 SSH1Q8WYL5 1049 aa25.7■■□□□ 1.7
TMEM260-203ENST00000539559 QRICH2Q9H0J4 1663 aa25.69■■□□□ 1.7
TMEM260-203ENST00000539559 AAMPQ13685 434 aa25.69■■□□□ 1.7
TMEM260-203ENST00000539559 L1TD1Q5T7N2 865 aaKnown RBP25.68■■□□□ 1.7
TMEM260-203ENST00000539559 STAG3Q9UJ98 1225 aa25.67■■□□□ 1.7
TMEM260-203ENST00000539559 GGNBP2Q9H3C7 697 aa25.66■■□□□ 1.7
TMEM260-203ENST00000539559 ESF1Q9H501 851 aaKnown RBP25.66■■□□□ 1.7
TMEM260-203ENST00000539559 NOB1Q9ULX3 412 aaKnown RBP25.66■■□□□ 1.7
TMEM260-203ENST00000539559 GOLGA6L3A6NEY3 463 aa25.65■■□□□ 1.7
TMEM260-203ENST00000539559 MYO5BQ9ULV0 1848 aa25.64■■□□□ 1.7
TMEM260-203ENST00000539559 TMEM57Q8N5G2 664 aa25.63■■□□□ 1.69
TMEM260-203ENST00000539559 TRIM35Q9UPQ4 493 aa25.63■■□□□ 1.69
TMEM260-203ENST00000539559 SPATA31D1Q6ZQQ2 1576 aa25.62■■□□□ 1.69
TMEM260-203ENST00000539559 RSPH6AQ9H0K4 717 aa25.62■■□□□ 1.69
TMEM260-203ENST00000539559 TMPOP42166 694 aaKnown RBP25.62■■□□□ 1.69
TMEM260-203ENST00000539559 TRAK2O60296 914 aa25.61■■□□□ 1.69
TMEM260-203ENST00000539559 CHMP5Q9NZZ3 219 aa25.61■■□□□ 1.69
TMEM260-203ENST00000539559 ATF7IPQ6VMQ6 1270 aa25.6■■□□□ 1.69
TMEM260-203ENST00000539559 STK26Q9P289 416 aa25.6■■□□□ 1.69
TMEM260-203ENST00000539559 LNPKQ9C0E8 428 aa25.6■■□□□ 1.69
TMEM260-203ENST00000539559 ZMYM3Q14202 1370 aa25.59■■□□□ 1.69
TMEM260-203ENST00000539559 PLEKHF1Q96S99 279 aa25.59■■□□□ 1.69
TMEM260-203ENST00000539559 EVC2Q86UK5 1308 aa25.58■■□□□ 1.69
TMEM260-203ENST00000539559 FSD2A1L4K1 749 aa25.58■■□□□ 1.68
TMEM260-203ENST00000539559 DDX19BQ9UMR2 479 aa25.58■■□□□ 1.68
TMEM260-203ENST00000539559 HDAC1Q13547 482 aaPredicted RBP25.57■■□□□ 1.68
TMEM260-203ENST00000539559 HSCBQ8IWL3 235 aa25.57■■□□□ 1.68
TMEM260-203ENST00000539559 ANKRD36BQ8N2N9 1353 aa25.56■■□□□ 1.68
TMEM260-203ENST00000539559 RIPK4P57078 832 aa25.55■■□□□ 1.68
TMEM260-203ENST00000539559 FOXD4L1Q9NU39 408 aa25.55■■□□□ 1.68
TMEM260-203ENST00000539559 TULP4Q9NRJ4 1543 aa25.55■■□□□ 1.68
TMEM260-203ENST00000539559 SRPK2P78362 688 aaKnown RBP25.54■■□□□ 1.68
TMEM260-203ENST00000539559 SMC5Q8IY18 1101 aa25.54■■□□□ 1.68
TMEM260-203ENST00000539559 A2ML1A8K2U0 1454 aa25.54■■□□□ 1.68
TMEM260-203ENST00000539559 ZNF692Q9BU19 519 aaPredicted RBP25.54■■□□□ 1.68
TMEM260-203ENST00000539559 ARHGEF28Q8N1W1 1705 aaKnown RBP25.53■■□□□ 1.68
TMEM260-203ENST00000539559 ZBTB40Q9NUA8 1239 aa25.53■■□□□ 1.68
TMEM260-203ENST00000539559 A0A1W2PP64 1363 aa25.52■■□□□ 1.68
TMEM260-203ENST00000539559 FBLN1P23142 703 aa25.52■■□□□ 1.68
TMEM260-203ENST00000539559 ADGRB2O60241 1585 aa25.52■■□□□ 1.68
TMEM260-203ENST00000539559 PUS7Q96PZ0 661 aaKnown RBP25.51■■□□□ 1.67
TMEM260-203ENST00000539559 C1orf115Q9H7X2 142 aa25.51■■□□□ 1.67
TMEM260-203ENST00000539559 USP32Q8NFA0 1604 aa25.49■■□□□ 1.67
TMEM260-203ENST00000539559 RIMS2Q9UQ26 1411 aa25.48■■□□□ 1.67
TMEM260-203ENST00000539559 CT47B1P0C2W7 299 aaPredicted RBP25.48■■□□□ 1.67
TMEM260-203ENST00000539559 MINK1Q8N4C8 1332 aaPredicted RBP25.47■■□□□ 1.67
TMEM260-203ENST00000539559 YTHDC2Q9H6S0 1430 aaKnown RBP25.47■■□□□ 1.67
TMEM260-203ENST00000539559 ALKQ9UM73 1620 aa25.47■■□□□ 1.67
TMEM260-203ENST00000539559 NUCB1Q02818 461 aa25.47■■□□□ 1.67
TMEM260-203ENST00000539559 FYB1O15117 783 aa25.46■■□□□ 1.67
TMEM260-203ENST00000539559 CD2BP2O95400 341 aaKnown RBP25.46■■□□□ 1.67
TMEM260-203ENST00000539559 THUMPD2Q9BTF0 503 aaKnown RBP25.46■■□□□ 1.67
TMEM260-203ENST00000539559 TNPO1Q92973 898 aaKnown RBP25.45■■□□□ 1.67
TMEM260-203ENST00000539559 NAP1L5Q96NT1 182 aaPredicted RBP25.45■■□□□ 1.67
TMEM260-203ENST00000539559 CHD1LQ86WJ1 897 aa25.45■■□□□ 1.66
TMEM260-203ENST00000539559 NSD2O96028 1365 aa25.44■■□□□ 1.66
TMEM260-203ENST00000539559 ANKRD45Q5TZF3 282 aa25.44■■□□□ 1.66
TMEM260-203ENST00000539559 UBE2Q2Q8WVN8 375 aa25.44■■□□□ 1.66
TMEM260-203ENST00000539559 RBM42Q9BTD8 480 aaKnown RBP25.44■■□□□ 1.66
TMEM260-203ENST00000539559 ELL2O00472 640 aaPredicted RBP25.44■■□□□ 1.66
TMEM260-203ENST00000539559 HSP90AB1P08238 724 aaKnown RBP25.44■■□□□ 1.66
TMEM260-203ENST00000539559 GRPEL1Q9HAV7 217 aa25.43■■□□□ 1.66
TMEM260-203ENST00000539559 TNRQ92752 1358 aa25.43■■□□□ 1.66
TMEM260-203ENST00000539559 PTPRMP28827 1452 aa25.43■■□□□ 1.66
TMEM260-203ENST00000539559 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.43■■□□□ 1.66
TMEM260-203ENST00000539559 RBM25P49756 843 aaKnown RBP25.42■■□□□ 1.66
TMEM260-203ENST00000539559 PRAM1Q96QH2 718 aa25.42■■□□□ 1.66
TMEM260-203ENST00000539559 ABCC11Q96J66 1382 aa25.42■■□□□ 1.66
TMEM260-203ENST00000539559 DDIT3P35638 169 aa25.41■■□□□ 1.66
TMEM260-203ENST00000539559 GAS2L3Q86XJ1 694 aa25.41■■□□□ 1.66
TMEM260-203ENST00000539559 DIAPH1O60610 1272 aaKnown RBP25.41■■□□□ 1.66
TMEM260-203ENST00000539559 TRHP20396 242 aaPredicted RBP25.41■■□□□ 1.66
TMEM260-203ENST00000539559 MRE11P49959 708 aa25.41■■□□□ 1.66
TMEM260-203ENST00000539559 NCBP3Q53F19 620 aaKnown RBP25.41■■□□□ 1.66
TMEM260-203ENST00000539559 COL3A1P02461 1466 aaPredicted RBP25.41■■□□□ 1.66
TMEM260-203ENST00000539559 DDX11L8A8MPP1 907 aa25.4■■□□□ 1.66
TMEM260-203ENST00000539559 PNNQ9H307 717 aaKnown RBP25.4■■□□□ 1.66
TMEM260-203ENST00000539559 KIF16BQ96L93 1317 aa25.4■■□□□ 1.66
TMEM260-203ENST00000539559 IPO8O15397 1037 aaKnown RBP25.4■■□□□ 1.66
TMEM260-203ENST00000539559 HDGFP51858 240 aaKnown RBP25.4■■□□□ 1.66
TMEM260-203ENST00000539559 KIF2CQ99661 725 aa25.4■■□□□ 1.66
TMEM260-203ENST00000539559 HSP90AA1P07900 732 aaKnown RBP25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms