RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TMC1Q8TDI8 760 aa18.13■□□□□ 0.49
CCDC42-202ENST00000539522 CARD14Q9BXL6 1004 aa18.13■□□□□ 0.49
CCDC42-202ENST00000539522 NINLQ9Y2I6 1382 aa18.13■□□□□ 0.49
CCDC42-202ENST00000539522 MED1Q15648 1581 aaPredicted RBP18.13■□□□□ 0.49
CCDC42-202ENST00000539522 ANKRD36BQ8N2N9 1353 aa18.12■□□□□ 0.49
CCDC42-202ENST00000539522 USP54Q70EL1 1684 aa18.12■□□□□ 0.49
CCDC42-202ENST00000539522 PSME1Q06323 249 aa18.11■□□□□ 0.49
CCDC42-202ENST00000539522 LRP6O75581 1613 aa18.1■□□□□ 0.49
CCDC42-202ENST00000539522 KTN1Q86UP2 1357 aaKnown RBP18.1■□□□□ 0.49
CCDC42-202ENST00000539522 CDCA8Q53HL2 280 aa18.1■□□□□ 0.49
CCDC42-202ENST00000539522 PHRF1Q9P1Y6 1649 aaKnown RBP18.09■□□□□ 0.49
CCDC42-202ENST00000539522 JCADQ9P266 1359 aa18.08■□□□□ 0.49
CCDC42-202ENST00000539522 TTC21BQ7Z4L5 1316 aa18.08■□□□□ 0.49
CCDC42-202ENST00000539522 LRRC59Q96AG4 307 aaKnown RBP18.08■□□□□ 0.48
CCDC42-202ENST00000539522 POLR3GLQ9BT43 218 aa18.08■□□□□ 0.48
CCDC42-202ENST00000539522 EDC4Q6P2E9 1401 aaKnown RBP18.07■□□□□ 0.48
CCDC42-202ENST00000539522 ZRANB1Q9UGI0 708 aa18.07■□□□□ 0.48
CCDC42-202ENST00000539522 KIF20BQ96Q89 1820 aa18.07■□□□□ 0.48
CCDC42-202ENST00000539522 ZNF692Q9BU19 519 aaPredicted RBP18.06■□□□□ 0.48
CCDC42-202ENST00000539522 BRD4O60885 1362 aaPredicted RBP18.05■□□□□ 0.48
CCDC42-202ENST00000539522 SLIT3O75094 1523 aa18.04■□□□□ 0.48
CCDC42-202ENST00000539522 PANK3Q9H999 370 aa18.04■□□□□ 0.48
CCDC42-202ENST00000539522 TERF2IPQ9NYB0 399 aa18.04■□□□□ 0.48
CCDC42-202ENST00000539522 NSD3Q9BZ95 1437 aa18.04■□□□□ 0.48
CCDC42-202ENST00000539522 PAK3O75914 559 aaPredicted RBP18.03■□□□□ 0.48
CCDC42-202ENST00000539522 NUTM2GQ5VZR2 741 aa18.03■□□□□ 0.48
CCDC42-202ENST00000539522 HDGFL2Q7Z4V5 671 aaPredicted RBP18.03■□□□□ 0.48
CCDC42-202ENST00000539522 NME9Q86XW9 330 aa18.03■□□□□ 0.48
CCDC42-202ENST00000539522 CABLES1Q8TDN4 633 aa18.03■□□□□ 0.48
CCDC42-202ENST00000539522 OVOS2A0A0J9YW53 1432 aa18.02■□□□□ 0.48
CCDC42-202ENST00000539522 PER1O15534 1290 aaPredicted RBP18.02■□□□□ 0.48
CCDC42-202ENST00000539522 OVOS2Q6IE36 1432 aa18.02■□□□□ 0.48
CCDC42-202ENST00000539522 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.02■□□□□ 0.48
CCDC42-202ENST00000539522 ARHGEF10O15013 1369 aa18.02■□□□□ 0.47
CCDC42-202ENST00000539522 USP31Q70CQ4 1352 aa18.02■□□□□ 0.47
CCDC42-202ENST00000539522 USP19O94966 1318 aa18.01■□□□□ 0.47
CCDC42-202ENST00000539522 ANKRD26Q9UPS8 1709 aa18.01■□□□□ 0.47
CCDC42-202ENST00000539522 TTC21AQ8NDW8 1320 aa18■□□□□ 0.47
CCDC42-202ENST00000539522 NFAT5O94916 1531 aa18■□□□□ 0.47
CCDC42-202ENST00000539522 FYB1O15117 783 aa17.99■□□□□ 0.47
CCDC42-202ENST00000539522 ABTB2Q8N961 1025 aa17.99■□□□□ 0.47
CCDC42-202ENST00000539522 LMOD2Q6P5Q4 547 aa17.98■□□□□ 0.47
CCDC42-202ENST00000539522 SPATA31A6Q5VVP1 1343 aa17.98■□□□□ 0.47
CCDC42-202ENST00000539522 ZNF316A6NFI3 1004 aaPredicted RBP17.97■□□□□ 0.47
CCDC42-202ENST00000539522 COL18A1P39060 1754 aa17.96■□□□□ 0.47
CCDC42-202ENST00000539522 PLEKHG5O94827 1062 aa17.96■□□□□ 0.47
CCDC42-202ENST00000539522 NLRP6P59044 892 aa17.95■□□□□ 0.46
CCDC42-202ENST00000539522 AMER1Q5JTC6 1135 aaPredicted RBP17.95■□□□□ 0.46
CCDC42-202ENST00000539522 PLCH1Q4KWH8 1693 aa17.95■□□□□ 0.46
CCDC42-202ENST00000539522 LMO7Q8WWI1 1683 aa17.94■□□□□ 0.46
CCDC42-202ENST00000539522 NUTM2BA6NNL0 878 aaPredicted RBP17.94■□□□□ 0.46
CCDC42-202ENST00000539522 NUTM2EB1AL46 878 aaPredicted RBP17.94■□□□□ 0.46
CCDC42-202ENST00000539522 NUTM2AQ8IVF1 878 aaPredicted RBP17.94■□□□□ 0.46
CCDC42-202ENST00000539522 GGNBP2Q9H3C7 697 aa17.94■□□□□ 0.46
CCDC42-202ENST00000539522 LTN1O94822 1766 aa17.94■□□□□ 0.46
CCDC42-202ENST00000539522 FBLN1P23142 703 aa17.93■□□□□ 0.46
CCDC42-202ENST00000539522 NRAPQ86VF7 1730 aa17.92■□□□□ 0.46
CCDC42-202ENST00000539522 NLRP13Q86W25 1043 aa17.92■□□□□ 0.46
CCDC42-202ENST00000539522 PEAK1Q9H792 1746 aa17.92■□□□□ 0.46
CCDC42-202ENST00000539522 RGPD5Q99666 1765 aa17.91■□□□□ 0.46
CCDC42-202ENST00000539522 GCP02774 474 aa17.91■□□□□ 0.46
CCDC42-202ENST00000539522 COL14A1Q05707 1796 aaKnown RBP17.9■□□□□ 0.46
CCDC42-202ENST00000539522 ADAMTS2O95450 1211 aa17.9■□□□□ 0.46
CCDC42-202ENST00000539522 DDX10Q13206 875 aaKnown RBP17.9■□□□□ 0.46
CCDC42-202ENST00000539522 KIAA0232Q92628 1395 aa17.9■□□□□ 0.46
CCDC42-202ENST00000539522 FAM83GA6ND36 823 aa17.89■□□□□ 0.45
CCDC42-202ENST00000539522 RGS17Q9UGC6 210 aaPredicted RBP17.89■□□□□ 0.45
CCDC42-202ENST00000539522 CPDO75976 1380 aa17.89■□□□□ 0.45
CCDC42-202ENST00000539522 SLIT2O94813 1529 aa17.88■□□□□ 0.45
CCDC42-202ENST00000539522 CAMTA1Q9Y6Y1 1673 aa17.88■□□□□ 0.45
CCDC42-202ENST00000539522 NWD2Q9ULI1 1742 aa17.88■□□□□ 0.45
CCDC42-202ENST00000539522 CGNL1Q0VF96 1302 aa17.88■□□□□ 0.45
CCDC42-202ENST00000539522 MAP2P11137 1827 aaKnown RBP17.87■□□□□ 0.45
CCDC42-202ENST00000539522 ZC3H6P61129 1189 aaKnown RBP17.87■□□□□ 0.45
CCDC42-202ENST00000539522 BCL9LQ86UU0 1499 aa17.87■□□□□ 0.45
CCDC42-202ENST00000539522 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.86■□□□□ 0.45
CCDC42-202ENST00000539522 ARHGEF25Q86VW2 580 aa17.86■□□□□ 0.45
CCDC42-202ENST00000539522 NPC1L1Q9UHC9 1359 aa17.86■□□□□ 0.45
CCDC42-202ENST00000539522 SOX12O15370 315 aa17.85■□□□□ 0.45
CCDC42-202ENST00000539522 NSD2O96028 1365 aa17.85■□□□□ 0.45
CCDC42-202ENST00000539522 CHRNA2Q15822 529 aa17.85■□□□□ 0.45
CCDC42-202ENST00000539522 COG3Q96JB2 828 aa17.85■□□□□ 0.45
CCDC42-202ENST00000539522 KNSTRNQ9Y448 316 aa17.85■□□□□ 0.45
CCDC42-202ENST00000539522 FNBP4Q8N3X1 1017 aaPredicted RBP17.84■□□□□ 0.45
CCDC42-202ENST00000539522 AXIN2Q9Y2T1 843 aa17.84■□□□□ 0.45
CCDC42-202ENST00000539522 C8orf37Q96NL8 207 aa17.83■□□□□ 0.44
CCDC42-202ENST00000539522 MAP3K19Q56UN5 1328 aa17.82■□□□□ 0.44
CCDC42-202ENST00000539522 CC2D1BQ5T0F9 858 aaKnown RBP17.82■□□□□ 0.44
CCDC42-202ENST00000539522 KCNH5Q8NCM2 988 aa17.82■□□□□ 0.44
CCDC42-202ENST00000539522 ABCC6O95255 1503 aa17.82■□□□□ 0.44
CCDC42-202ENST00000539522 AATKQ6ZMQ8 1374 aa17.81■□□□□ 0.44
CCDC42-202ENST00000539522 AFF2P51816 1311 aa17.81■□□□□ 0.44
CCDC42-202ENST00000539522 RRS1Q15050 365 aaKnown RBP17.81■□□□□ 0.44
CCDC42-202ENST00000539522 SMG6Q86US8 1419 aaKnown RBP17.81■□□□□ 0.44
CCDC42-202ENST00000539522 RGPD2P0DJD1 1756 aa17.8■□□□□ 0.44
CCDC42-202ENST00000539522 COL5A2P05997 1499 aaPredicted RBP17.8■□□□□ 0.44
CCDC42-202ENST00000539522 HAP1P54257 671 aaPredicted RBP17.79■□□□□ 0.44
CCDC42-202ENST00000539522 PRDM11Q9NQV5 511 aa17.79■□□□□ 0.44
CCDC42-202ENST00000539522 EMILIN1Q9Y6C2 1016 aa17.79■□□□□ 0.44
CCDC42-202ENST00000539522 TNNT2P45379 298 aaPredicted RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms