RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 PAXIP1Q6ZW49 1069 aaPredicted RBP11.51□□□□□ -0.57
PTPRB-204ENST00000538708 KCNH5Q8NCM2 988 aa11.51□□□□□ -0.57
PTPRB-204ENST00000538708 BRMS1Q9HCU9 246 aa11.51□□□□□ -0.57
PTPRB-204ENST00000538708 KDM4AO75164 1064 aa11.5□□□□□ -0.57
PTPRB-204ENST00000538708 R3HCC1Q9Y3T6 440 aaKnown RBP11.5□□□□□ -0.57
PTPRB-204ENST00000538708 REC8O95072 547 aa11.5□□□□□ -0.57
PTPRB-204ENST00000538708 LRPPRCP42704 1394 aaKnown RBP11.5□□□□□ -0.57
PTPRB-204ENST00000538708 TMOD3Q9NYL9 352 aa11.5□□□□□ -0.57
PTPRB-204ENST00000538708 MPHOSPH8Q99549 860 aa11.5□□□□□ -0.57
PTPRB-204ENST00000538708 FSD1Q9BTV5 496 aa11.5□□□□□ -0.57
PTPRB-204ENST00000538708 UBAP1LF5GYI3 381 aa11.49□□□□□ -0.57
PTPRB-204ENST00000538708 RRP1P56182 461 aaKnown RBP11.49□□□□□ -0.57
PTPRB-204ENST00000538708 RRS1Q15050 365 aaKnown RBP11.49□□□□□ -0.57
PTPRB-204ENST00000538708 SAFBQ15424 915 aaKnown RBP eCLIP11.49□□□□□ -0.57
PTPRB-204ENST00000538708 DAPK1P53355 1430 aa11.49□□□□□ -0.57
PTPRB-204ENST00000538708 NUDT16Q96DE0 195 aaKnown RBP11.49□□□□□ -0.57
PTPRB-204ENST00000538708 ATP6V1DQ9Y5K8 247 aa11.49□□□□□ -0.57
PTPRB-204ENST00000538708 GRIN2AQ12879 1464 aa11.49□□□□□ -0.57
PTPRB-204ENST00000538708 CUL7Q14999 1698 aa11.49□□□□□ -0.57
PTPRB-204ENST00000538708 KIF7Q2M1P5 1343 aa11.48□□□□□ -0.57
PTPRB-204ENST00000538708 STARD3NLO95772 234 aa11.48□□□□□ -0.57
PTPRB-204ENST00000538708 KIAA1107Q9UPP5 1409 aa11.48□□□□□ -0.57
PTPRB-204ENST00000538708 SART3Q15020 963 aaKnown RBP11.48□□□□□ -0.57
PTPRB-204ENST00000538708 HDGFL1Q5TGJ6 251 aa11.48□□□□□ -0.57
PTPRB-204ENST00000538708 ZSCAN29Q8IWY8 852 aaPredicted RBP11.48□□□□□ -0.57
PTPRB-204ENST00000538708 CNTROBQ8N137 903 aa11.48□□□□□ -0.57
PTPRB-204ENST00000538708 DENND4BO75064 1496 aaPredicted RBP11.48□□□□□ -0.57
PTPRB-204ENST00000538708 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.47□□□□□ -0.57
PTPRB-204ENST00000538708 TPM1P09493 284 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 RRP12Q5JTH9 1297 aaKnown RBP11.47□□□□□ -0.57
PTPRB-204ENST00000538708 SLC12A5Q9H2X9 1139 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 XBP1P17861 261 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 HOOK1Q9UJC3 728 aaKnown RBP11.47□□□□□ -0.57
PTPRB-204ENST00000538708 ZNF652Q9Y2D9 606 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 CCDC141Q6ZP82 1450 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 CCDC7Q96M83 1385 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 FAM161AQ3B820 660 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 GNAI3P08754 354 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 NBPF1Q3BBV0 1214 aa11.47□□□□□ -0.57
PTPRB-204ENST00000538708 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.47□□□□□ -0.57
PTPRB-204ENST00000538708 CCDC57Q2TAC2 916 aa11.46□□□□□ -0.57
PTPRB-204ENST00000538708 INTS3Q68E01 1043 aaKnown RBP11.46□□□□□ -0.57
PTPRB-204ENST00000538708 TOM1O60784 492 aa11.46□□□□□ -0.57
PTPRB-204ENST00000538708 STK11IPQ8N1F8 1099 aa11.46□□□□□ -0.57
PTPRB-204ENST00000538708 AMOTL2Q9Y2J4 779 aa11.46□□□□□ -0.57
PTPRB-204ENST00000538708 ATAD2Q6PL18 1390 aa11.46□□□□□ -0.57
PTPRB-204ENST00000538708 WAPLQ7Z5K2 1190 aa11.46□□□□□ -0.58
PTPRB-204ENST00000538708 ERC1Q8IUD2 1116 aa11.46□□□□□ -0.58
PTPRB-204ENST00000538708 EXOC6Q8TAG9 804 aa11.46□□□□□ -0.58
PTPRB-204ENST00000538708 SURF6O75683 361 aaKnown RBP11.46□□□□□ -0.58
PTPRB-204ENST00000538708 TWISTNBQ3B726 338 aaPredicted RBP11.46□□□□□ -0.58
PTPRB-204ENST00000538708 ARAP1Q96P48 1450 aa11.46□□□□□ -0.58
PTPRB-204ENST00000538708 ANKRD30BQ9BXX2 1392 aa11.45□□□□□ -0.58
PTPRB-204ENST00000538708 IGHMBP2P38935 993 aaKnown RBP11.45□□□□□ -0.58
PTPRB-204ENST00000538708 SIL1Q9H173 461 aa11.45□□□□□ -0.58
PTPRB-204ENST00000538708 CLASRPQ8N2M8 674 aaKnown RBP11.45□□□□□ -0.58
PTPRB-204ENST00000538708 ABCA10Q8WWZ4 1543 aa11.45□□□□□ -0.58
PTPRB-204ENST00000538708 GOLGA6L19H0YKK7 550 aa11.45□□□□□ -0.58
PTPRB-204ENST00000538708 FBXO31Q5XUX0 539 aaPredicted RBP11.44□□□□□ -0.58
PTPRB-204ENST00000538708 ANKRD20A12PQ8NF67 263 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 TEX14Q8IWB6 1497 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 SLC4A2P04920 1241 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 PPP2R1AP30153 589 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 TTLL12Q14166 644 aaPredicted RBP11.44□□□□□ -0.58
PTPRB-204ENST00000538708 BCL11BQ9C0K0 894 aaPredicted RBP11.44□□□□□ -0.58
PTPRB-204ENST00000538708 ZNF219Q9P2Y4 722 aaPredicted RBP11.44□□□□□ -0.58
PTPRB-204ENST00000538708 PLB1Q6P1J6 1458 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 MSH6P52701 1360 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 TMOD2Q9NZR1 351 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 PHF8Q9UPP1 1060 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 FAM135AQ9P2D6 1515 aa11.44□□□□□ -0.58
PTPRB-204ENST00000538708 TCP11L2Q8N4U5 519 aa11.43□□□□□ -0.58
PTPRB-204ENST00000538708 BECN2A8MW95 431 aa11.43□□□□□ -0.58
PTPRB-204ENST00000538708 MPRIPQ6WCQ1 1025 aa11.43□□□□□ -0.58
PTPRB-204ENST00000538708 KRT28Q7Z3Y7 464 aa11.43□□□□□ -0.58
PTPRB-204ENST00000538708 CAMSAP2Q08AD1 1489 aa11.43□□□□□ -0.58
PTPRB-204ENST00000538708 AK7Q96M32 723 aa11.43□□□□□ -0.58
PTPRB-204ENST00000538708 EXOC5O00471 708 aa11.43□□□□□ -0.58
PTPRB-204ENST00000538708 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
PTPRB-204ENST00000538708 RTN4Q9NQC3 1192 aaKnown RBP11.42□□□□□ -0.58
PTPRB-204ENST00000538708 FANCAO15360 1455 aa11.42□□□□□ -0.58
PTPRB-204ENST00000538708 ZBED9Q6R2W3 1325 aa11.42□□□□□ -0.58
PTPRB-204ENST00000538708 WDHD1O75717 1129 aaPredicted RBP11.42□□□□□ -0.58
PTPRB-204ENST00000538708 GNAT3A8MTJ3 354 aa11.42□□□□□ -0.58
PTPRB-204ENST00000538708 MPHOSPH10O00566 681 aaKnown RBP11.42□□□□□ -0.58
PTPRB-204ENST00000538708 GNAI2P04899 355 aa11.42□□□□□ -0.58
PTPRB-204ENST00000538708 RPGRQ92834 1020 aaKnown RBP11.42□□□□□ -0.58
PTPRB-204ENST00000538708 FOXO3O43524 673 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 PSMA5P28066 241 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 USHBP1Q8N6Y0 703 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 LNPKQ9C0E8 428 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 ADAMTS8Q9UP79 889 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 SMC3Q9UQE7 1217 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 VPS37CA5D8V6 355 aaPredicted RBP11.41□□□□□ -0.58
PTPRB-204ENST00000538708 BICD2Q8TD16 824 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 PTCD1O75127 700 aaKnown RBP11.41□□□□□ -0.58
PTPRB-204ENST00000538708 EPS15P42566 896 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 PANK1Q8TE04 598 aa11.41□□□□□ -0.58
PTPRB-204ENST00000538708 EXOSC9Q06265 439 aaKnown RBP11.41□□□□□ -0.58
PTPRB-204ENST00000538708 NACAP1Q9BZK3 213 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms