RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TMEM63CQ9P1W3 806 aa15.1■□□□□ 0.01
USP3-203ENST00000538686 MAGI3Q5TCQ9 1506 aa15.1■□□□□ 0.01
USP3-203ENST00000538686 PRPF40AO75400 957 aaKnown RBP15.1■□□□□ 0.01
USP3-203ENST00000538686 BRMS1Q9HCU9 246 aa15.1■□□□□ 0.01
USP3-203ENST00000538686 CFAP44Q96MT7 982 aa15.09■□□□□ 0.01
USP3-203ENST00000538686 SPINK5Q9NQ38 1064 aaPredicted RBP15.09■□□□□ 0.01
USP3-203ENST00000538686 ABCC5O15440 1437 aa15.09■□□□□ 0.01
USP3-203ENST00000538686 KIAA1524Q8TCG1 905 aa15.08■□□□□ 0.01
USP3-203ENST00000538686 MYCBPQ99417 103 aaPredicted RBP15.08■□□□□ 0.01
USP3-203ENST00000538686 FOXD4L1Q9NU39 408 aa15.08■□□□□ 0.01
USP3-203ENST00000538686 KIAA0586Q9BVV6 1533 aa15.08■□□□□ 0.01
USP3-203ENST00000538686 ANKRD36BQ8N2N9 1353 aa15.08■□□□□ 0
USP3-203ENST00000538686 TRPM1Q7Z4N2 1603 aa15.08■□□□□ 0
USP3-203ENST00000538686 SMTNL1A8MU46 457 aa15.08■□□□□ 0
USP3-203ENST00000538686 RASSF4Q9H2L5 321 aa15.08■□□□□ 0
USP3-203ENST00000538686 FAM53CQ9NYF3 392 aa15.08■□□□□ 0
USP3-203ENST00000538686 RBM27Q9P2N5 1060 aaKnown RBP15.08■□□□□ 0
USP3-203ENST00000538686 SCAF11Q99590 1463 aaKnown RBP15.07■□□□□ 0
USP3-203ENST00000538686 RARSP54136 660 aaKnown RBP15.07■□□□□ 0
USP3-203ENST00000538686 RABEP1Q15276 862 aa15.07■□□□□ 0
USP3-203ENST00000538686 RNF214Q8ND24 703 aa15.07■□□□□ 0
USP3-203ENST00000538686 REREQ9P2R6 1566 aa15.07■□□□□ 0
USP3-203ENST00000538686 GPRASP1Q5JY77 1395 aa15.07■□□□□ 0
USP3-203ENST00000538686 KDM5DQ9BY66 1539 aa15.07■□□□□ 0
USP3-203ENST00000538686 GOLGA6L6A8MZA4 724 aa15.07■□□□□ 0
USP3-203ENST00000538686 REC8O95072 547 aa15.07■□□□□ 0
USP3-203ENST00000538686 CYP2C19P33261 490 aa15.07■□□□□ 0
USP3-203ENST00000538686 MVPQ14764 893 aaKnown RBP15.07■□□□□ 0
USP3-203ENST00000538686 BMP2KLQ5H9B9 411 aa15.07■□□□□ 0
USP3-203ENST00000538686 ADGBQ8N7X0 1667 aa15.06■□□□□ 0
USP3-203ENST00000538686 GTF2A1P52655 376 aaPredicted RBP15.06■□□□□ 0
USP3-203ENST00000538686 ZNF397Q8NF99 534 aaPredicted RBP15.06■□□□□ 0
USP3-203ENST00000538686 PAXBP1Q9Y5B6 917 aa15.06■□□□□ 0
USP3-203ENST00000538686 RAD50Q92878 1312 aa15.06■□□□□ 0
USP3-203ENST00000538686 CD2BP2O95400 341 aaKnown RBP15.05■□□□□ 0
USP3-203ENST00000538686 RAD51AP2Q09MP3 1159 aa15.05■□□□□ 0
USP3-203ENST00000538686 TTC12Q9H892 705 aaPredicted RBP15.05■□□□□ 0
USP3-203ENST00000538686 ITSN2Q9NZM3 1697 aa15.05■□□□□ 0
USP3-203ENST00000538686 APAF1O14727 1248 aa15.05■□□□□ -0
USP3-203ENST00000538686 NOP2P46087 812 aaKnown RBP15.05■□□□□ -0
USP3-203ENST00000538686 MUM1L1Q5H9M0 696 aa15.05■□□□□ -0
USP3-203ENST00000538686 NCAPGQ9BPX3 1015 aa15.05■□□□□ -0
USP3-203ENST00000538686 SLC52A1Q9NWF4 448 aa15.05■□□□□ -0
USP3-203ENST00000538686 ERICH4A6NGS2 130 aa15.04■□□□□ -0
USP3-203ENST00000538686 ERBINQ96RT1 1412 aa15.04■□□□□ -0
USP3-203ENST00000538686 CFAP74Q9C0B2 1584 aa15.04■□□□□ -0
USP3-203ENST00000538686 PRDM15P57071 1507 aaPredicted RBP15.04■□□□□ -0
USP3-203ENST00000538686 TMF1P82094 1093 aa15.04■□□□□ -0
USP3-203ENST00000538686 PKD2Q13563 968 aa15.04■□□□□ -0
USP3-203ENST00000538686 SAMD1Q6SPF0 538 aaPredicted RBP15.04■□□□□ -0
USP3-203ENST00000538686 SYNMO15061 1565 aa15.03■□□□□ -0
USP3-203ENST00000538686 CFAP65Q6ZU64 1925 aaKnown RBP15.03■□□□□ -0
USP3-203ENST00000538686 ZBTB7CA1YPR0 619 aa15.03■□□□□ -0
USP3-203ENST00000538686 ADCY5O95622 1261 aa15.03■□□□□ -0
USP3-203ENST00000538686 SLFNL1Q499Z3 407 aa15.03■□□□□ -0
USP3-203ENST00000538686 CEP120Q8N960 986 aa15.03■□□□□ -0
USP3-203ENST00000538686 SLC26A8Q96RN1 970 aa15.03■□□□□ -0
USP3-203ENST00000538686 RSPH14Q9UHP6 348 aa15.03■□□□□ -0
USP3-203ENST00000538686 KNSTRNQ9Y448 316 aa15.03■□□□□ -0
USP3-203ENST00000538686 HSP90B1P14625 803 aaKnown RBP15.02■□□□□ -0
USP3-203ENST00000538686 HNRNPH2P55795 449 aaKnown RBP15.02■□□□□ -0
USP3-203ENST00000538686 LMOD3Q0VAK6 560 aa15.02■□□□□ -0
USP3-203ENST00000538686 ICE2Q659A1 982 aa15.02■□□□□ -0
USP3-203ENST00000538686 SMC4Q9NTJ3 1288 aa15.02■□□□□ -0
USP3-203ENST00000538686 EIF4G3O43432 1585 aaKnown RBP15.02■□□□□ -0
USP3-203ENST00000538686 RLBP1P12271 317 aa15.02□□□□□ -0.01
USP3-203ENST00000538686 AK9Q5TCS8 1911 aa15.01□□□□□ -0.01
USP3-203ENST00000538686 DHX16O60231 1041 aaKnown RBP15.01□□□□□ -0.01
USP3-203ENST00000538686 TXLNBQ8N3L3 684 aa15.01□□□□□ -0.01
USP3-203ENST00000538686 NOL10Q9BSC4 688 aaKnown RBP15.01□□□□□ -0.01
USP3-203ENST00000538686 USP25Q9UHP3 1055 aa15.01□□□□□ -0.01
USP3-203ENST00000538686 DISP3Q9P2K9 1392 aa15.01□□□□□ -0.01
USP3-203ENST00000538686 BRPF1P55201 1214 aaPredicted RBP15.01□□□□□ -0.01
USP3-203ENST00000538686 RNF20Q5VTR2 975 aa15.01□□□□□ -0.01
USP3-203ENST00000538686 CNPY4Q8N129 248 aa15.01□□□□□ -0.01
USP3-203ENST00000538686 GOLGA6L1Q8N7Z2 621 aa15.01□□□□□ -0.01
USP3-203ENST00000538686 CCDC141Q6ZP82 1450 aa15□□□□□ -0.01
USP3-203ENST00000538686 PRAG1Q86YV5 1406 aa15□□□□□ -0.01
USP3-203ENST00000538686 NESP48681 1621 aa15□□□□□ -0.01
USP3-203ENST00000538686 TEX35Q5T0J7 233 aa15□□□□□ -0.01
USP3-203ENST00000538686 C17orf53Q8N3J3 647 aaPredicted RBP15□□□□□ -0.01
USP3-203ENST00000538686 KANK1Q14678 1352 aa15□□□□□ -0.01
USP3-203ENST00000538686 ADGRL2O95490 1459 aa14.99□□□□□ -0.01
USP3-203ENST00000538686 MYCNP04198 464 aaPredicted RBP14.99□□□□□ -0.01
USP3-203ENST00000538686 NUCB1Q02818 461 aa14.99□□□□□ -0.01
USP3-203ENST00000538686 CCDC112Q8NEF3 446 aa14.99□□□□□ -0.01
USP3-203ENST00000538686 KIF1BPQ96EK5 621 aa14.99□□□□□ -0.01
USP3-203ENST00000538686 DDX19BQ9UMR2 479 aa14.99□□□□□ -0.01
USP3-203ENST00000538686 ASXL1Q8IXJ9 1541 aa14.99□□□□□ -0.01
USP3-203ENST00000538686 CCDC146Q8IYE0 955 aa14.99□□□□□ -0.01
USP3-203ENST00000538686 TESK2Q96S53 571 aa14.99□□□□□ -0.01
USP3-203ENST00000538686 CWC15Q9P013 229 aaKnown RBP14.99□□□□□ -0.01
USP3-203ENST00000538686 BICRAQ9NZM4 1560 aa14.98□□□□□ -0.01
USP3-203ENST00000538686 LOC102724159A0A0B4J2E5 919 aa14.98□□□□□ -0.01
USP3-203ENST00000538686 CASQ1P31415 396 aa14.98□□□□□ -0.01
USP3-203ENST00000538686 PWP2Q15269 919 aaKnown RBP14.98□□□□□ -0.01
USP3-203ENST00000538686 ZKSCAN2Q63HK3 967 aa14.98□□□□□ -0.01
USP3-203ENST00000538686 WWC1Q8IX03 1113 aa14.98□□□□□ -0.01
USP3-203ENST00000538686 ABCC10Q5T3U5 1492 aa14.98□□□□□ -0.01
USP3-203ENST00000538686 EIF2AK4Q9P2K8 1649 aaKnown RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms