RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CT47B1P0C2W7 299 aaPredicted RBP8.62□□□□□ -1.03
USP28-206ENST00000538224 CRBNQ96SW2 442 aa8.62□□□□□ -1.03
USP28-206ENST00000538224 MYH16Q9H6N6 1097 aa8.62□□□□□ -1.03
USP28-206ENST00000538224 LRRC7Q96NW7 1537 aa8.62□□□□□ -1.03
USP28-206ENST00000538224 PTCH1Q13635 1447 aa8.62□□□□□ -1.03
USP28-206ENST00000538224 XRN1Q8IZH2 1706 aaKnown RBP8.61□□□□□ -1.03
USP28-206ENST00000538224 WASLO00401 505 aaPredicted RBP8.61□□□□□ -1.03
USP28-206ENST00000538224 FYB1O15117 783 aa8.61□□□□□ -1.03
USP28-206ENST00000538224 U2AF1L5P0DN76 240 aaPredicted RBP8.61□□□□□ -1.03
USP28-206ENST00000538224 TNNT2P45379 298 aaPredicted RBP8.61□□□□□ -1.03
USP28-206ENST00000538224 U2AF1Q01081 240 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP28-206ENST00000538224 PDE3AQ14432 1141 aa8.61□□□□□ -1.03
USP28-206ENST00000538224 CENPQQ7L2Z9 268 aaPredicted RBP8.61□□□□□ -1.03
USP28-206ENST00000538224 TCP11L2Q8N4U5 519 aa8.61□□□□□ -1.03
USP28-206ENST00000538224 BCL11AQ9H165 835 aa8.61□□□□□ -1.03
USP28-206ENST00000538224 ADAMTS13Q76LX8 1427 aa8.61□□□□□ -1.03
USP28-206ENST00000538224 METP08581 1390 aa8.61□□□□□ -1.03
USP28-206ENST00000538224 AATKQ6ZMQ8 1374 aa8.61□□□□□ -1.03
USP28-206ENST00000538224 FMN2Q9NZ56 1722 aa8.6□□□□□ -1.03
USP28-206ENST00000538224 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.6□□□□□ -1.03
USP28-206ENST00000538224 IL16Q14005 1332 aa8.6□□□□□ -1.03
USP28-206ENST00000538224 NEFMP07197 916 aa8.6□□□□□ -1.03
USP28-206ENST00000538224 USP54Q70EL1 1684 aa8.59□□□□□ -1.03
USP28-206ENST00000538224 DIAPH1O60610 1272 aaKnown RBP8.59□□□□□ -1.03
USP28-206ENST00000538224 CANXP27824 592 aaKnown RBP8.59□□□□□ -1.03
USP28-206ENST00000538224 ANP32AP39687 249 aaKnown RBP8.59□□□□□ -1.03
USP28-206ENST00000538224 ZNF692Q9BU19 519 aaPredicted RBP8.59□□□□□ -1.03
USP28-206ENST00000538224 GGNBP2Q9H3C7 697 aa8.59□□□□□ -1.03
USP28-206ENST00000538224 CABP1Q9NZU7 370 aa8.59□□□□□ -1.03
USP28-206ENST00000538224 EID1Q9Y6B2 187 aa8.59□□□□□ -1.03
USP28-206ENST00000538224 CEP170BQ9Y4F5 1589 aaPredicted RBP8.59□□□□□ -1.03
USP28-206ENST00000538224 PLIN1O60240 522 aa8.58□□□□□ -1.04
USP28-206ENST00000538224 ANP32EQ9BTT0 268 aa8.58□□□□□ -1.04
USP28-206ENST00000538224 CCDC61Q9Y6R9 512 aa8.58□□□□□ -1.04
USP28-206ENST00000538224 PIK3R4Q99570 1358 aa8.58□□□□□ -1.04
USP28-206ENST00000538224 KDM2BQ8NHM5 1336 aa8.57□□□□□ -1.04
USP28-206ENST00000538224 DLG5Q8TDM6 1919 aa8.57□□□□□ -1.04
USP28-206ENST00000538224 U2SURPO15042 1029 aaKnown RBP8.57□□□□□ -1.04
USP28-206ENST00000538224 CALD1Q05682 793 aaKnown RBP8.57□□□□□ -1.04
USP28-206ENST00000538224 WAPLQ7Z5K2 1190 aa8.57□□□□□ -1.04
USP28-206ENST00000538224 FCHSD2O94868 740 aa8.56□□□□□ -1.04
USP28-206ENST00000538224 NUDT16Q96DE0 195 aaKnown RBP8.56□□□□□ -1.04
USP28-206ENST00000538224 SPINK5Q9NQ38 1064 aaPredicted RBP8.56□□□□□ -1.04
USP28-206ENST00000538224 TMPOP42166 694 aaKnown RBP8.55□□□□□ -1.04
USP28-206ENST00000538224 RARSP54136 660 aaKnown RBP8.55□□□□□ -1.04
USP28-206ENST00000538224 NEUROD2Q15784 382 aa8.55□□□□□ -1.04
USP28-206ENST00000538224 C20orf194Q5TEA3 1177 aa8.55□□□□□ -1.04
USP28-206ENST00000538224 TXNDC2Q86VQ3 553 aa8.55□□□□□ -1.04
USP28-206ENST00000538224 THEMISQ8N1K5 641 aaPredicted RBP8.55□□□□□ -1.04
USP28-206ENST00000538224 COG3Q96JB2 828 aa8.55□□□□□ -1.04
USP28-206ENST00000538224 PLEKHF1Q96S99 279 aa8.55□□□□□ -1.04
USP28-206ENST00000538224 ROBO2Q9HCK4 1378 aa8.55□□□□□ -1.04
USP28-206ENST00000538224 OVOS2A0A0J9YW53 1432 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 OVOS2Q6IE36 1432 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 ANKARQ7Z5J8 1434 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 RGPD1P0DJD0 1748 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 CHD2O14647 1828 aaKnown RBP8.54□□□□□ -1.04
USP28-206ENST00000538224 LMOD3Q0VAK6 560 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 PMFBP1Q8TBY8 1022 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 ZNF428Q96B54 188 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 RRP7AQ9Y3A4 280 aaKnown RBP8.54□□□□□ -1.04
USP28-206ENST00000538224 TBX22Q9Y458 520 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 USP6P35125 1406 aa8.54□□□□□ -1.04
USP28-206ENST00000538224 RGPD8O14715 1765 aaPredicted RBP8.53□□□□□ -1.04
USP28-206ENST00000538224 PLEKHG3A1L390 1219 aa8.53□□□□□ -1.04
USP28-206ENST00000538224 BCAR3O75815 825 aa8.53□□□□□ -1.04
USP28-206ENST00000538224 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.53□□□□□ -1.04
USP28-206ENST00000538224 CLUAP1Q96AJ1 413 aa8.53□□□□□ -1.04
USP28-206ENST00000538224 POLKQ9UBT6 870 aa8.53□□□□□ -1.04
USP28-206ENST00000538224 DMRT2Q9Y5R5 561 aa8.53□□□□□ -1.04
USP28-206ENST00000538224 TTC21AQ8NDW8 1320 aa8.53□□□□□ -1.04
USP28-206ENST00000538224 KIF16BQ96L93 1317 aa8.53□□□□□ -1.04
USP28-206ENST00000538224 ADAMTSL3P82987 1691 aa8.53□□□□□ -1.04
USP28-206ENST00000538224 PDE4AP27815 886 aa8.52□□□□□ -1.05
USP28-206ENST00000538224 BACH2Q9BYV9 841 aa8.52□□□□□ -1.05
USP28-206ENST00000538224 RSPH6AQ9H0K4 717 aa8.52□□□□□ -1.05
USP28-206ENST00000538224 PTPRUQ92729 1446 aa8.52□□□□□ -1.05
USP28-206ENST00000538224 PIK3C2AO00443 1686 aa8.52□□□□□ -1.05
USP28-206ENST00000538224 LTKP29376 864 aa8.51□□□□□ -1.05
USP28-206ENST00000538224 RIPK4P57078 832 aa8.51□□□□□ -1.05
USP28-206ENST00000538224 NFE2L2Q16236 605 aa8.51□□□□□ -1.05
USP28-206ENST00000538224 ZKSCAN2Q63HK3 967 aa8.51□□□□□ -1.05
USP28-206ENST00000538224 IPO9Q96P70 1041 aaKnown RBP8.51□□□□□ -1.05
USP28-206ENST00000538224 SETD1BQ9UPS6 1966 aaKnown RBP8.51□□□□□ -1.05
USP28-206ENST00000538224 TTC21BQ7Z4L5 1316 aa8.51□□□□□ -1.05
USP28-206ENST00000538224 PRR36Q9H6K5 1346 aa8.51□□□□□ -1.05
USP28-206ENST00000538224 KIF24Q5T7B8 1368 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 USP31Q70CQ4 1352 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 PRKAR2BP31323 418 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 HAP1P54257 671 aaPredicted RBP8.5□□□□□ -1.05
USP28-206ENST00000538224 ALDH1L2Q3SY69 923 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 SSH2Q76I76 1423 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 NME9Q86XW9 330 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 FTSJ3Q8IY81 847 aaKnown RBP8.5□□□□□ -1.05
USP28-206ENST00000538224 FRAT1Q92837 279 aaPredicted RBP8.5□□□□□ -1.05
USP28-206ENST00000538224 DDRGK1Q96HY6 314 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 CHMP4BQ9H444 224 aaKnown RBP8.5□□□□□ -1.05
USP28-206ENST00000538224 PEAK1Q9H792 1746 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 TRIM35Q9UPQ4 493 aa8.5□□□□□ -1.05
USP28-206ENST00000538224 NOP58Q9Y2X3 529 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms