RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 PTMSP20962 102 aa18.58■□□□□ 0.57
SYNE1-236ENST00000537750 KLHL40Q2TBA0 621 aa18.58■□□□□ 0.57
SYNE1-236ENST00000537750 BMP2KLQ5H9B9 411 aa18.58■□□□□ 0.57
SYNE1-236ENST00000537750 TBC1D9Q6ZT07 1266 aa18.58■□□□□ 0.57
SYNE1-236ENST00000537750 FAM13BQ9NYF5 915 aa18.58■□□□□ 0.57
SYNE1-236ENST00000537750 SPAG9O60271 1321 aaKnown RBP18.58■□□□□ 0.56
SYNE1-236ENST00000537750 ABCA6Q8N139 1617 aa18.58■□□□□ 0.56
SYNE1-236ENST00000537750 CT47B1P0C2W7 299 aaPredicted RBP18.58■□□□□ 0.56
SYNE1-236ENST00000537750 TMPOP42166 694 aaKnown RBP18.57■□□□□ 0.56
SYNE1-236ENST00000537750 C1orf115Q9H7X2 142 aa18.57■□□□□ 0.56
SYNE1-236ENST00000537750 MCTP1Q6DN14 999 aa18.56■□□□□ 0.56
SYNE1-236ENST00000537750 CAVIN1Q6NZI2 390 aaKnown RBP18.56■□□□□ 0.56
SYNE1-236ENST00000537750 TMEM132EQ6IEE7 984 aa18.56■□□□□ 0.56
SYNE1-236ENST00000537750 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.56■□□□□ 0.56
SYNE1-236ENST00000537750 CD109Q6YHK3 1445 aa18.55■□□□□ 0.56
SYNE1-236ENST00000537750 CHGAP10645 457 aaKnown RBP18.55■□□□□ 0.56
SYNE1-236ENST00000537750 PLCH2O75038 1416 aa18.55■□□□□ 0.56
SYNE1-236ENST00000537750 XPCQ01831 940 aaPredicted RBP18.55■□□□□ 0.56
SYNE1-236ENST00000537750 SHROOM2Q13796 1616 aa18.55■□□□□ 0.56
SYNE1-236ENST00000537750 AK9Q5TCS8 1911 aa18.55■□□□□ 0.56
SYNE1-236ENST00000537750 ARID3AQ99856 593 aa18.55■□□□□ 0.56
SYNE1-236ENST00000537750 KIAA1210Q9ULL0 1709 aa18.55■□□□□ 0.56
SYNE1-236ENST00000537750 MAP3K4Q9Y6R4 1608 aa18.54■□□□□ 0.56
SYNE1-236ENST00000537750 KIF3BO15066 747 aa18.54■□□□□ 0.56
SYNE1-236ENST00000537750 RBSNQ9H1K0 784 aa18.53■□□□□ 0.56
SYNE1-236ENST00000537750 PKP1Q13835 747 aa18.53■□□□□ 0.56
SYNE1-236ENST00000537750 PLEKHF1Q96S99 279 aa18.53■□□□□ 0.56
SYNE1-236ENST00000537750 NOS1P29475 1434 aa18.53■□□□□ 0.56
SYNE1-236ENST00000537750 SBNO2Q9Y2G9 1366 aa18.53■□□□□ 0.56
SYNE1-236ENST00000537750 ZSCAN23Q3MJ62 389 aa18.52■□□□□ 0.56
SYNE1-236ENST00000537750 IPO8O15397 1037 aaKnown RBP18.52■□□□□ 0.56
SYNE1-236ENST00000537750 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.52■□□□□ 0.56
SYNE1-236ENST00000537750 CALD1Q05682 793 aaKnown RBP18.52■□□□□ 0.55
SYNE1-236ENST00000537750 CLEC17AQ6ZS10 378 aa18.52■□□□□ 0.55
SYNE1-236ENST00000537750 NCBP3Q53F19 620 aaKnown RBP18.51■□□□□ 0.55
SYNE1-236ENST00000537750 ZNF445P59923 1031 aa18.5■□□□□ 0.55
SYNE1-236ENST00000537750 RBM27Q9P2N5 1060 aaKnown RBP18.5■□□□□ 0.55
SYNE1-236ENST00000537750 IBTKQ9P2D0 1353 aaPredicted RBP18.5■□□□□ 0.55
SYNE1-236ENST00000537750 KIF16BQ96L93 1317 aa18.5■□□□□ 0.55
SYNE1-236ENST00000537750 PRIM1P49642 420 aaKnown RBP18.5■□□□□ 0.55
SYNE1-236ENST00000537750 LMBRD1Q9NUN5 540 aa18.5■□□□□ 0.55
SYNE1-236ENST00000537750 PPIP5K1Q6PFW1 1433 aa18.49■□□□□ 0.55
SYNE1-236ENST00000537750 NOL7Q9UMY1 257 aaKnown RBP18.49■□□□□ 0.55
SYNE1-236ENST00000537750 CHAMP1Q96JM3 812 aa18.49■□□□□ 0.55
SYNE1-236ENST00000537750 MYOM2P54296 1465 aa18.48■□□□□ 0.55
SYNE1-236ENST00000537750 UQCRHLA0A096LP55 91 aa18.48■□□□□ 0.55
SYNE1-236ENST00000537750 UQCRHP07919 91 aa18.48■□□□□ 0.55
SYNE1-236ENST00000537750 ADGRB2O60241 1585 aa18.48■□□□□ 0.55
SYNE1-236ENST00000537750 ZBTB7BO15156 539 aaPredicted RBP18.48■□□□□ 0.55
SYNE1-236ENST00000537750 PRDM4Q9UKN5 801 aa18.48■□□□□ 0.55
SYNE1-236ENST00000537750 ABCC1P33527 1531 aa18.48■□□□□ 0.55
SYNE1-236ENST00000537750 ABCC11Q96J66 1382 aa18.47■□□□□ 0.55
SYNE1-236ENST00000537750 SIRT2Q8IXJ6 389 aa18.47■□□□□ 0.55
SYNE1-236ENST00000537750 GGNBP2Q9H3C7 697 aa18.47■□□□□ 0.55
SYNE1-236ENST00000537750 PRPF40AO75400 957 aaKnown RBP18.47■□□□□ 0.55
SYNE1-236ENST00000537750 TERF1P54274 439 aa18.47■□□□□ 0.55
SYNE1-236ENST00000537750 TET3O43151 1660 aa18.46■□□□□ 0.55
SYNE1-236ENST00000537750 GCC1Q96CN9 775 aa18.46■□□□□ 0.55
SYNE1-236ENST00000537750 PDLIM2Q96JY6 352 aa18.46■□□□□ 0.55
SYNE1-236ENST00000537750 CABP2Q9NPB3 220 aa18.46■□□□□ 0.55
SYNE1-236ENST00000537750 ZNF500O60304 480 aaPredicted RBP18.45■□□□□ 0.54
SYNE1-236ENST00000537750 CFAP74Q9C0B2 1584 aa18.45■□□□□ 0.54
SYNE1-236ENST00000537750 ADGRL1O94910 1474 aa18.45■□□□□ 0.54
SYNE1-236ENST00000537750 CDC45O75419 566 aa18.45■□□□□ 0.54
SYNE1-236ENST00000537750 GSPT1P15170 499 aaKnown RBP18.45■□□□□ 0.54
SYNE1-236ENST00000537750 SAFB2Q14151 953 aaKnown RBP eCLIP18.45■□□□□ 0.54
SYNE1-236ENST00000537750 GPT2Q8TD30 523 aa18.44■□□□□ 0.54
SYNE1-236ENST00000537750 HS1BP3Q53T59 392 aa18.44■□□□□ 0.54
SYNE1-236ENST00000537750 MYO3AQ8NEV4 1616 aa18.44■□□□□ 0.54
SYNE1-236ENST00000537750 ZGPATQ8N5A5 531 aaKnown RBP18.44■□□□□ 0.54
SYNE1-236ENST00000537750 IL16Q14005 1332 aa18.43■□□□□ 0.54
SYNE1-236ENST00000537750 ZBTB7CA1YPR0 619 aa18.43■□□□□ 0.54
SYNE1-236ENST00000537750 ELL2O00472 640 aaPredicted RBP18.43■□□□□ 0.54
SYNE1-236ENST00000537750 CYP2E1P05181 493 aaPredicted RBP18.43■□□□□ 0.54
SYNE1-236ENST00000537750 NUCB2P80303 420 aa18.43■□□□□ 0.54
SYNE1-236ENST00000537750 SENP3Q9H4L4 574 aaPredicted RBP18.43■□□□□ 0.54
SYNE1-236ENST00000537750 ZKSCAN5Q9Y2L8 839 aa18.43■□□□□ 0.54
SYNE1-236ENST00000537750 ALDH1L2Q3SY69 923 aa18.42■□□□□ 0.54
SYNE1-236ENST00000537750 NUTM2DQ5VT03 806 aaPredicted RBP18.42■□□□□ 0.54
SYNE1-236ENST00000537750 ZFYVE16Q7Z3T8 1539 aa18.42■□□□□ 0.54
SYNE1-236ENST00000537750 RABEP1Q15276 862 aa18.42■□□□□ 0.54
SYNE1-236ENST00000537750 FOXD4L5Q5VV16 416 aaPredicted RBP18.42■□□□□ 0.54
SYNE1-236ENST00000537750 FOXD4L4Q8WXT5 416 aaPredicted RBP18.42■□□□□ 0.54
SYNE1-236ENST00000537750 C14orf93Q9H972 538 aaKnown RBP18.42■□□□□ 0.54
SYNE1-236ENST00000537750 NSFL1CQ9UNZ2 370 aaKnown RBP18.42■□□□□ 0.54
SYNE1-236ENST00000537750 DEPDC5O75140 1603 aa18.41■□□□□ 0.54
SYNE1-236ENST00000537750 SYCE3A1L190 88 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 MAP7D2Q96T17 732 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 THUMPD2Q9BTF0 503 aaKnown RBP18.4■□□□□ 0.54
SYNE1-236ENST00000537750 NEURL4Q96JN8 1562 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 ANKRD36BQ8N2N9 1353 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 QRICH2Q9H0J4 1663 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 C16orf71Q8IYS4 520 aaPredicted RBP18.4■□□□□ 0.54
SYNE1-236ENST00000537750 TSPYL6Q8N831 410 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 RNF214Q8ND24 703 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 TMEM63CQ9P1W3 806 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 ZDHHC9Q9Y397 364 aa18.4■□□□□ 0.54
SYNE1-236ENST00000537750 MROH2AA6NES4 1674 aa18.39■□□□□ 0.54
SYNE1-236ENST00000537750 NRXN1Q9ULB1 1477 aa18.39■□□□□ 0.53
SYNE1-236ENST00000537750 PLEKHM2Q8IWE5 1019 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms