RNA–Protein interactions for RNA: ENST00000537529.6

MKS1-204, Transcript of Meckel syndrome, type 1, humanhuman

TSL 1 (best) BASIC

Gene MKS1, Length 2,083 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-204ENST00000537529 PNNQ9H307 717 aaKnown RBP20.34■□□□□ 0.85
MKS1-204ENST00000537529 MYH16Q9H6N6 1097 aa20.34■□□□□ 0.85
MKS1-204ENST00000537529 C3P01024 1663 aa20.34■□□□□ 0.85
MKS1-204ENST00000537529 PLEKHF1Q96S99 279 aa20.33■□□□□ 0.85
MKS1-204ENST00000537529 CCDC61Q9Y6R9 512 aa20.33■□□□□ 0.85
MKS1-204ENST00000537529 ROBO2Q9HCK4 1378 aa20.33■□□□□ 0.84
MKS1-204ENST00000537529 EID1Q9Y6B2 187 aa20.32■□□□□ 0.84
MKS1-204ENST00000537529 SLIT1O75093 1534 aa20.32■□□□□ 0.84
MKS1-204ENST00000537529 FER1L4A9Z1Z3 1794 aa20.32■□□□□ 0.84
MKS1-204ENST00000537529 MON2Q7Z3U7 1717 aa20.31■□□□□ 0.84
MKS1-204ENST00000537529 MS4A1P11836 297 aa20.31■□□□□ 0.84
MKS1-204ENST00000537529 CEBPAP49715 358 aaPredicted RBP20.31■□□□□ 0.84
MKS1-204ENST00000537529 LTKP29376 864 aa20.31■□□□□ 0.84
MKS1-204ENST00000537529 PDE3AQ14432 1141 aa20.31■□□□□ 0.84
MKS1-204ENST00000537529 CENPQQ7L2Z9 268 aaPredicted RBP20.31■□□□□ 0.84
MKS1-204ENST00000537529 KDM2BQ8NHM5 1336 aa20.3■□□□□ 0.84
MKS1-204ENST00000537529 CANXP27824 592 aaKnown RBP20.3■□□□□ 0.84
MKS1-204ENST00000537529 ARHGAP23Q9P227 1491 aa20.3■□□□□ 0.84
MKS1-204ENST00000537529 ITSN1Q15811 1721 aa20.3■□□□□ 0.84
MKS1-204ENST00000537529 TMPOP42166 694 aaKnown RBP20.29■□□□□ 0.84
MKS1-204ENST00000537529 POLKQ9UBT6 870 aa20.29■□□□□ 0.84
MKS1-204ENST00000537529 AKAP12Q02952 1782 aa20.29■□□□□ 0.84
MKS1-204ENST00000537529 RARSP54136 660 aaKnown RBP20.28■□□□□ 0.84
MKS1-204ENST00000537529 ZNF692Q9BU19 519 aaPredicted RBP20.28■□□□□ 0.84
MKS1-204ENST00000537529 AATKQ6ZMQ8 1374 aa20.27■□□□□ 0.84
MKS1-204ENST00000537529 NME9Q86XW9 330 aa20.27■□□□□ 0.84
MKS1-204ENST00000537529 ANP32EQ9BTT0 268 aa20.27■□□□□ 0.84
MKS1-204ENST00000537529 MSH5O43196 834 aa20.26■□□□□ 0.83
MKS1-204ENST00000537529 MYT1Q01538 1121 aa20.26■□□□□ 0.83
MKS1-204ENST00000537529 CDK12Q9NYV4 1490 aaPredicted RBP20.26■□□□□ 0.83
MKS1-204ENST00000537529 FCHSD2O94868 740 aa20.26■□□□□ 0.83
MKS1-204ENST00000537529 IL16Q14005 1332 aa20.26■□□□□ 0.83
MKS1-204ENST00000537529 PRR36Q9H6K5 1346 aa20.26■□□□□ 0.83
MKS1-204ENST00000537529 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.26■□□□□ 0.83
MKS1-204ENST00000537529 CT47B1P0C2W7 299 aaPredicted RBP20.25■□□□□ 0.83
MKS1-204ENST00000537529 COG3Q96JB2 828 aa20.25■□□□□ 0.83
MKS1-204ENST00000537529 LRRC7Q96NW7 1537 aa20.25■□□□□ 0.83
MKS1-204ENST00000537529 PPM1GO15355 546 aaPredicted RBP20.25■□□□□ 0.83
MKS1-204ENST00000537529 DIP2AQ14689 1571 aa20.24■□□□□ 0.83
MKS1-204ENST00000537529 TOPAZ1Q8N9V7 1692 aa20.24■□□□□ 0.83
MKS1-204ENST00000537529 TRIM35Q9UPQ4 493 aa20.24■□□□□ 0.83
MKS1-204ENST00000537529 PTPRUQ92729 1446 aa20.24■□□□□ 0.83
MKS1-204ENST00000537529 NCKAP5LQ9HCH0 1330 aa20.23■□□□□ 0.83
MKS1-204ENST00000537529 NEFMP07197 916 aa20.23■□□□□ 0.83
MKS1-204ENST00000537529 THEMISQ8N1K5 641 aaPredicted RBP20.23■□□□□ 0.83
MKS1-204ENST00000537529 SLC26A8Q96RN1 970 aa20.22■□□□□ 0.83
MKS1-204ENST00000537529 TBX22Q9Y458 520 aa20.22■□□□□ 0.83
MKS1-204ENST00000537529 ANP32AP39687 249 aaKnown RBP20.22■□□□□ 0.83
MKS1-204ENST00000537529 RIPK4P57078 832 aa20.22■□□□□ 0.83
MKS1-204ENST00000537529 FRAT1Q92837 279 aaPredicted RBP20.22■□□□□ 0.83
MKS1-204ENST00000537529 RSPH6AQ9H0K4 717 aa20.22■□□□□ 0.83
MKS1-204ENST00000537529 PTCH1Q13635 1447 aa20.22■□□□□ 0.83
MKS1-204ENST00000537529 TRHP20396 242 aaPredicted RBP20.21■□□□□ 0.83
MKS1-204ENST00000537529 EMILIN1Q9Y6C2 1016 aa20.21■□□□□ 0.83
MKS1-204ENST00000537529 MAP2P11137 1827 aaKnown RBP20.21■□□□□ 0.83
MKS1-204ENST00000537529 PDE4AP27815 886 aa20.2■□□□□ 0.82
MKS1-204ENST00000537529 PLPPR3Q6T4P5 718 aa20.2■□□□□ 0.82
MKS1-204ENST00000537529 NRKQ7Z2Y5 1582 aa20.2■□□□□ 0.82
MKS1-204ENST00000537529 FBLN1P23142 703 aa20.2■□□□□ 0.82
MKS1-204ENST00000537529 AAMPQ13685 434 aa20.2■□□□□ 0.82
MKS1-204ENST00000537529 ERICH6Q7L0X2 663 aa20.2■□□□□ 0.82
MKS1-204ENST00000537529 ZRANB1Q9UGI0 708 aa20.2■□□□□ 0.82
MKS1-204ENST00000537529 PLEKHG3A1L390 1219 aa20.19■□□□□ 0.82
MKS1-204ENST00000537529 PRKAR2BP31323 418 aa20.19■□□□□ 0.82
MKS1-204ENST00000537529 PANK1Q8TE04 598 aa20.19■□□□□ 0.82
MKS1-204ENST00000537529 AMOTL2Q9Y2J4 779 aa20.18■□□□□ 0.82
MKS1-204ENST00000537529 TSR2Q969E8 191 aaKnown RBP20.18■□□□□ 0.82
MKS1-204ENST00000537529 BACH2Q9BYV9 841 aa20.18■□□□□ 0.82
MKS1-204ENST00000537529 IL13P35225 146 aa20.17■□□□□ 0.82
MKS1-204ENST00000537529 CLUAP1Q96AJ1 413 aa20.17■□□□□ 0.82
MKS1-204ENST00000537529 COG6Q9Y2V7 657 aa20.17■□□□□ 0.82
MKS1-204ENST00000537529 TTC21BQ7Z4L5 1316 aa20.17■□□□□ 0.82
MKS1-204ENST00000537529 ACEP12821 1306 aa20.16■□□□□ 0.82
MKS1-204ENST00000537529 USP6P35125 1406 aa20.16■□□□□ 0.82
MKS1-204ENST00000537529 EXOSC9Q06265 439 aaKnown RBP20.15■□□□□ 0.82
MKS1-204ENST00000537529 BCL2L13Q9BXK5 485 aa20.15■□□□□ 0.82
MKS1-204ENST00000537529 NFE2L2Q16236 605 aa20.15■□□□□ 0.82
MKS1-204ENST00000537529 OVOS2A0A0J9YW53 1432 aa20.14■□□□□ 0.81
MKS1-204ENST00000537529 OVOS2Q6IE36 1432 aa20.14■□□□□ 0.81
MKS1-204ENST00000537529 XRN1Q8IZH2 1706 aaKnown RBP20.13■□□□□ 0.81
MKS1-204ENST00000537529 CEP170BQ9Y4F5 1589 aaPredicted RBP20.13■□□□□ 0.81
MKS1-204ENST00000537529 HMOX1P09601 288 aa20.13■□□□□ 0.81
MKS1-204ENST00000537529 CALD1Q05682 793 aaKnown RBP20.13■□□□□ 0.81
MKS1-204ENST00000537529 RRS1Q15050 365 aaKnown RBP20.13■□□□□ 0.81
MKS1-204ENST00000537529 ZKSCAN2Q63HK3 967 aa20.13■□□□□ 0.81
MKS1-204ENST00000537529 SKAP1Q86WV1 359 aa20.13■□□□□ 0.81
MKS1-204ENST00000537529 SMC4Q9NTJ3 1288 aa20.12■□□□□ 0.81
MKS1-204ENST00000537529 NUTM2FA1L443 756 aa20.11■□□□□ 0.81
MKS1-204ENST00000537529 RLBP1P12271 317 aa20.11■□□□□ 0.81
MKS1-204ENST00000537529 IPO9Q96P70 1041 aaKnown RBP20.11■□□□□ 0.81
MKS1-204ENST00000537529 PIK3R4Q99570 1358 aa20.1■□□□□ 0.81
MKS1-204ENST00000537529 NALCNQ8IZF0 1738 aa20.1■□□□□ 0.81
MKS1-204ENST00000537529 PMFBP1Q8TBY8 1022 aa20.09■□□□□ 0.81
MKS1-204ENST00000537529 PHACTR3Q96KR7 559 aa20.09■□□□□ 0.81
MKS1-204ENST00000537529 NOP58Q9Y2X3 529 aaKnown RBP20.09■□□□□ 0.81
MKS1-204ENST00000537529 TTC21AQ8NDW8 1320 aa20.09■□□□□ 0.81
MKS1-204ENST00000537529 SSH2Q76I76 1423 aa20.09■□□□□ 0.81
MKS1-204ENST00000537529 LMOD3Q0VAK6 560 aa20.09■□□□□ 0.81
MKS1-204ENST00000537529 FTSJ3Q8IY81 847 aaKnown RBP20.09■□□□□ 0.81
MKS1-204ENST00000537529 TNNQ9UQP3 1299 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms