RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 RIMBP3BA6NNM3 1639 aa16.9■□□□□ 0.3
LDLR-203ENST00000535915 RIMBP3Q9UFD9 1639 aa16.9■□□□□ 0.3
LDLR-203ENST00000535915 ARHGEF40Q8TER5 1519 aa16.89■□□□□ 0.3
LDLR-203ENST00000535915 AAMPQ13685 434 aa16.89■□□□□ 0.3
LDLR-203ENST00000535915 REREQ9P2R6 1566 aa16.89■□□□□ 0.29
LDLR-203ENST00000535915 TMPOP42166 694 aaKnown RBP16.89■□□□□ 0.29
LDLR-203ENST00000535915 TSR2Q969E8 191 aaKnown RBP16.89■□□□□ 0.29
LDLR-203ENST00000535915 DAXXQ9UER7 740 aaPredicted RBP16.89■□□□□ 0.29
LDLR-203ENST00000535915 PMFBP1Q8TBY8 1022 aa16.89■□□□□ 0.29
LDLR-203ENST00000535915 PPM1GO15355 546 aaPredicted RBP16.88■□□□□ 0.29
LDLR-203ENST00000535915 AGLP35573 1532 aa16.88■□□□□ 0.29
LDLR-203ENST00000535915 NEFMP07197 916 aa16.88■□□□□ 0.29
LDLR-203ENST00000535915 PPP6R1Q9UPN7 881 aa16.88■□□□□ 0.29
LDLR-203ENST00000535915 A2ML1A8K2U0 1454 aa16.87■□□□□ 0.29
LDLR-203ENST00000535915 DIAPH1O60610 1272 aaKnown RBP16.87■□□□□ 0.29
LDLR-203ENST00000535915 MLECQ14165 292 aa16.87■□□□□ 0.29
LDLR-203ENST00000535915 SLC4A3P48751 1232 aa16.86■□□□□ 0.29
LDLR-203ENST00000535915 WAPLQ7Z5K2 1190 aa16.86■□□□□ 0.29
LDLR-203ENST00000535915 TRIM35Q9UPQ4 493 aa16.86■□□□□ 0.29
LDLR-203ENST00000535915 PCDHB15Q9Y5E8 787 aa16.86■□□□□ 0.29
LDLR-203ENST00000535915 SETD1AO15047 1707 aaKnown RBP16.86■□□□□ 0.29
LDLR-203ENST00000535915 SPATA31D1Q6ZQQ2 1576 aa16.86■□□□□ 0.29
LDLR-203ENST00000535915 MAP2P11137 1827 aaKnown RBP16.86■□□□□ 0.29
LDLR-203ENST00000535915 RIMS2Q9UQ26 1411 aa16.85■□□□□ 0.29
LDLR-203ENST00000535915 CT47B1P0C2W7 299 aaPredicted RBP16.85■□□□□ 0.29
LDLR-203ENST00000535915 ZKSCAN2Q63HK3 967 aa16.85■□□□□ 0.29
LDLR-203ENST00000535915 EXOSC9Q06265 439 aaKnown RBP16.85■□□□□ 0.29
LDLR-203ENST00000535915 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.85■□□□□ 0.29
LDLR-203ENST00000535915 DLC1Q96QB1 1528 aa16.85■□□□□ 0.29
LDLR-203ENST00000535915 FTSJ3Q8IY81 847 aaKnown RBP16.84■□□□□ 0.29
LDLR-203ENST00000535915 RIPK4P57078 832 aa16.84■□□□□ 0.29
LDLR-203ENST00000535915 PNNQ9H307 717 aaKnown RBP16.84■□□□□ 0.29
LDLR-203ENST00000535915 SMC4Q9NTJ3 1288 aa16.84■□□□□ 0.29
LDLR-203ENST00000535915 MVPQ14764 893 aaKnown RBP16.83■□□□□ 0.29
LDLR-203ENST00000535915 USP35Q9P2H5 1018 aa16.83■□□□□ 0.29
LDLR-203ENST00000535915 PNPLA6Q8IY17 1366 aa16.83■□□□□ 0.28
LDLR-203ENST00000535915 DZIP1LQ8IYY4 767 aaKnown RBP16.83■□□□□ 0.28
LDLR-203ENST00000535915 ATP7BP35670 1465 aa16.82■□□□□ 0.28
LDLR-203ENST00000535915 RWDD1Q9H446 243 aaPredicted RBP16.82■□□□□ 0.28
LDLR-203ENST00000535915 IL16Q14005 1332 aa16.81■□□□□ 0.28
LDLR-203ENST00000535915 LRRC7Q96NW7 1537 aa16.8■□□□□ 0.28
LDLR-203ENST00000535915 FBLN1P23142 703 aa16.8■□□□□ 0.28
LDLR-203ENST00000535915 SSH1Q8WYL5 1049 aa16.8■□□□□ 0.28
LDLR-203ENST00000535915 PDZRN3Q9UPQ7 1066 aa16.79■□□□□ 0.28
LDLR-203ENST00000535915 CDC42BPGQ6DT37 1551 aa16.79■□□□□ 0.28
LDLR-203ENST00000535915 FCHSD2O94868 740 aa16.79■□□□□ 0.28
LDLR-203ENST00000535915 NRXN3Q9Y4C0 1643 aa16.79■□□□□ 0.28
LDLR-203ENST00000535915 POLKQ9UBT6 870 aa16.78■□□□□ 0.28
LDLR-203ENST00000535915 TRIM27P14373 513 aa16.78■□□□□ 0.28
LDLR-203ENST00000535915 SEC24BO95487 1268 aa16.77■□□□□ 0.28
LDLR-203ENST00000535915 PRKAR2BP31323 418 aa16.77■□□□□ 0.28
LDLR-203ENST00000535915 ESF1Q9H501 851 aaKnown RBP16.77■□□□□ 0.28
LDLR-203ENST00000535915 ATF7IPQ6VMQ6 1270 aa16.77■□□□□ 0.27
LDLR-203ENST00000535915 PPIP5K1Q6PFW1 1433 aa16.76■□□□□ 0.27
LDLR-203ENST00000535915 WASLO00401 505 aaPredicted RBP16.76■□□□□ 0.27
LDLR-203ENST00000535915 ITPRIPQ8IWB1 547 aa16.76■□□□□ 0.27
LDLR-203ENST00000535915 NOB1Q9ULX3 412 aaKnown RBP16.76■□□□□ 0.27
LDLR-203ENST00000535915 USP19O94966 1318 aa16.76■□□□□ 0.27
LDLR-203ENST00000535915 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.76■□□□□ 0.27
LDLR-203ENST00000535915 RSPH6AQ9H0K4 717 aa16.76■□□□□ 0.27
LDLR-203ENST00000535915 FAM135BQ49AJ0 1406 aa16.75■□□□□ 0.27
LDLR-203ENST00000535915 DDX19BQ9UMR2 479 aa16.75■□□□□ 0.27
LDLR-203ENST00000535915 METP08581 1390 aa16.75■□□□□ 0.27
LDLR-203ENST00000535915 TXNDC2Q86VQ3 553 aa16.75■□□□□ 0.27
LDLR-203ENST00000535915 EDC4Q6P2E9 1401 aaKnown RBP16.74■□□□□ 0.27
LDLR-203ENST00000535915 ZMYM3Q14202 1370 aa16.74■□□□□ 0.27
LDLR-203ENST00000535915 HMOX1P09601 288 aa16.74■□□□□ 0.27
LDLR-203ENST00000535915 CPSF1Q10570 1443 aaKnown RBP16.74■□□□□ 0.27
LDLR-203ENST00000535915 NFKBIBQ15653 356 aa16.73■□□□□ 0.27
LDLR-203ENST00000535915 KIF16BQ96L93 1317 aa16.73■□□□□ 0.27
LDLR-203ENST00000535915 NME9Q86XW9 330 aa16.73■□□□□ 0.27
LDLR-203ENST00000535915 DNAJC5Q9H3Z4 198 aa16.73■□□□□ 0.27
LDLR-203ENST00000535915 EMILIN1Q9Y6C2 1016 aa16.73■□□□□ 0.27
LDLR-203ENST00000535915 KNDC1Q76NI1 1749 aa16.73■□□□□ 0.27
LDLR-203ENST00000535915 KIF13AQ9H1H9 1805 aa16.72■□□□□ 0.27
LDLR-203ENST00000535915 ITSN1Q15811 1721 aa16.72■□□□□ 0.27
LDLR-203ENST00000535915 MON2Q7Z3U7 1717 aa16.72■□□□□ 0.27
LDLR-203ENST00000535915 IPO8O15397 1037 aaKnown RBP16.72■□□□□ 0.27
LDLR-203ENST00000535915 NUDT16Q96DE0 195 aaKnown RBP16.72■□□□□ 0.27
LDLR-203ENST00000535915 TMEM57Q8N5G2 664 aa16.71■□□□□ 0.27
LDLR-203ENST00000535915 PHACTR3Q96KR7 559 aa16.71■□□□□ 0.27
LDLR-203ENST00000535915 UPF2Q9HAU5 1272 aaKnown RBP16.71■□□□□ 0.27
LDLR-203ENST00000535915 DLG5Q8TDM6 1919 aa16.71■□□□□ 0.27
LDLR-203ENST00000535915 NFE2L2Q16236 605 aa16.71■□□□□ 0.26
LDLR-203ENST00000535915 ZRANB1Q9UGI0 708 aa16.71■□□□□ 0.26
LDLR-203ENST00000535915 HDGFP51858 240 aaKnown RBP16.7■□□□□ 0.26
LDLR-203ENST00000535915 ALDH1L2Q3SY69 923 aa16.7■□□□□ 0.26
LDLR-203ENST00000535915 AKAP12Q02952 1782 aa16.7■□□□□ 0.26
LDLR-203ENST00000535915 NCKAP5LQ9HCH0 1330 aa16.7■□□□□ 0.26
LDLR-203ENST00000535915 HDAC1Q13547 482 aaPredicted RBP16.7■□□□□ 0.26
LDLR-203ENST00000535915 CDK12Q9NYV4 1490 aaPredicted RBP16.69■□□□□ 0.26
LDLR-203ENST00000535915 CCDC61Q9Y6R9 512 aa16.69■□□□□ 0.26
LDLR-203ENST00000535915 COG3Q96JB2 828 aa16.69■□□□□ 0.26
LDLR-203ENST00000535915 IL13P35225 146 aa16.68■□□□□ 0.26
LDLR-203ENST00000535915 IL27Q8NEV9 243 aa16.68■□□□□ 0.26
LDLR-203ENST00000535915 RTN4Q9NQC3 1192 aaKnown RBP16.68■□□□□ 0.26
LDLR-203ENST00000535915 THUMPD2Q9BTF0 503 aaKnown RBP16.68■□□□□ 0.26
LDLR-203ENST00000535915 CPS1P31327 1500 aa16.68■□□□□ 0.26
LDLR-203ENST00000535915 CALD1Q05682 793 aaKnown RBP16.67■□□□□ 0.26
LDLR-203ENST00000535915 BECN1Q14457 450 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms