RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 U2AF1Q01081 240 aaKnown RBP eCLIP19.33■□□□□ 0.68
ECHDC1-220ENST00000528402 WWC1Q8IX03 1113 aa19.33■□□□□ 0.68
ECHDC1-220ENST00000528402 TCP11L2Q8N4U5 519 aa19.33■□□□□ 0.68
ECHDC1-220ENST00000528402 ITSN1Q15811 1721 aa19.32■□□□□ 0.68
ECHDC1-220ENST00000528402 AATKQ6ZMQ8 1374 aa19.32■□□□□ 0.68
ECHDC1-220ENST00000528402 IQSEC2Q5JU85 1478 aa19.32■□□□□ 0.68
ECHDC1-220ENST00000528402 AMOTL2Q9Y2J4 779 aa19.32■□□□□ 0.68
ECHDC1-220ENST00000528402 CEP170BQ9Y4F5 1589 aaPredicted RBP19.32■□□□□ 0.68
ECHDC1-220ENST00000528402 COL3A1P02461 1466 aaPredicted RBP19.31■□□□□ 0.68
ECHDC1-220ENST00000528402 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.31■□□□□ 0.68
ECHDC1-220ENST00000528402 DIAPH1O60610 1272 aaKnown RBP19.31■□□□□ 0.68
ECHDC1-220ENST00000528402 B4GALNT3Q6L9W6 998 aa19.31■□□□□ 0.68
ECHDC1-220ENST00000528402 DNAJC5Q9H3Z4 198 aa19.3■□□□□ 0.68
ECHDC1-220ENST00000528402 ADAMTSL3P82987 1691 aa19.29■□□□□ 0.68
ECHDC1-220ENST00000528402 RIMS1Q86UR5 1692 aaKnown RBP19.29■□□□□ 0.68
ECHDC1-220ENST00000528402 PTPRUQ92729 1446 aa19.29■□□□□ 0.68
ECHDC1-220ENST00000528402 SLC26A8Q96RN1 970 aa19.29■□□□□ 0.68
ECHDC1-220ENST00000528402 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.28■□□□□ 0.685e-7■■■□□ 18.9
ECHDC1-220ENST00000528402 COG3Q96JB2 828 aa19.28■□□□□ 0.68
ECHDC1-220ENST00000528402 ZNF142P52746 1687 aaPredicted RBP19.27■□□□□ 0.68
ECHDC1-220ENST00000528402 TOPAZ1Q8N9V7 1692 aa19.27■□□□□ 0.68
ECHDC1-220ENST00000528402 FCHSD2O94868 740 aa19.27■□□□□ 0.68
ECHDC1-220ENST00000528402 MAP2P11137 1827 aaKnown RBP19.27■□□□□ 0.68
ECHDC1-220ENST00000528402 ANKLE2Q86XL3 938 aa19.26■□□□□ 0.67
ECHDC1-220ENST00000528402 PLEKHF1Q96S99 279 aa19.25■□□□□ 0.67
ECHDC1-220ENST00000528402 MYH16Q9H6N6 1097 aa19.25■□□□□ 0.67
ECHDC1-220ENST00000528402 POLKQ9UBT6 870 aa19.25■□□□□ 0.67
ECHDC1-220ENST00000528402 PRR36Q9H6K5 1346 aa19.25■□□□□ 0.67
ECHDC1-220ENST00000528402 XRN1Q8IZH2 1706 aaKnown RBP19.25■□□□□ 0.67
ECHDC1-220ENST00000528402 U2SURPO15042 1029 aaKnown RBP19.25■□□□□ 0.67
ECHDC1-220ENST00000528402 NEFMP07197 916 aa19.25■□□□□ 0.67
ECHDC1-220ENST00000528402 MAPK8IP3Q9UPT6 1336 aa19.24■□□□□ 0.67
ECHDC1-220ENST00000528402 PLPPR3Q6T4P5 718 aa19.24■□□□□ 0.67
ECHDC1-220ENST00000528402 EXOC6Q8TAG9 804 aa19.24■□□□□ 0.67
ECHDC1-220ENST00000528402 CT47B1P0C2W7 299 aaPredicted RBP19.23■□□□□ 0.67
ECHDC1-220ENST00000528402 IL16Q14005 1332 aa19.23■□□□□ 0.67
ECHDC1-220ENST00000528402 ANKARQ7Z5J8 1434 aa19.22■□□□□ 0.67
ECHDC1-220ENST00000528402 CDK12Q9NYV4 1490 aaPredicted RBP19.22■□□□□ 0.67
ECHDC1-220ENST00000528402 TTC21AQ8NDW8 1320 aa19.22■□□□□ 0.67
ECHDC1-220ENST00000528402 SPINK5Q9NQ38 1064 aaPredicted RBP19.21■□□□□ 0.67
ECHDC1-220ENST00000528402 ACEP12821 1306 aa19.21■□□□□ 0.67
ECHDC1-220ENST00000528402 TTC21BQ7Z4L5 1316 aa19.21■□□□□ 0.67
ECHDC1-220ENST00000528402 TMPOP42166 694 aaKnown RBP19.2■□□□□ 0.66
ECHDC1-220ENST00000528402 NME9Q86XW9 330 aa19.2■□□□□ 0.66
ECHDC1-220ENST00000528402 NEUROD2Q15784 382 aa19.19■□□□□ 0.66
ECHDC1-220ENST00000528402 USP6P35125 1406 aa19.19■□□□□ 0.66
ECHDC1-220ENST00000528402 NRKQ7Z2Y5 1582 aa19.19■□□□□ 0.66
ECHDC1-220ENST00000528402 PDE3AQ14432 1141 aa19.17■□□□□ 0.66
ECHDC1-220ENST00000528402 RRP7AQ9Y3A4 280 aaKnown RBP19.17■□□□□ 0.66
ECHDC1-220ENST00000528402 CHD2O14647 1828 aaKnown RBP19.17■□□□□ 0.66
ECHDC1-220ENST00000528402 PLIN1O60240 522 aa19.17■□□□□ 0.66
ECHDC1-220ENST00000528402 SSH2Q76I76 1423 aa19.16■□□□□ 0.66
ECHDC1-220ENST00000528402 NCKAP5LQ9HCH0 1330 aa19.16■□□□□ 0.66
ECHDC1-220ENST00000528402 IL13P35225 146 aa19.16■□□□□ 0.66
ECHDC1-220ENST00000528402 AAMPQ13685 434 aa19.16■□□□□ 0.66
ECHDC1-220ENST00000528402 CRBNQ96SW2 442 aa19.16■□□□□ 0.66
ECHDC1-220ENST00000528402 DMRT2Q9Y5R5 561 aa19.16■□□□□ 0.66
ECHDC1-220ENST00000528402 CALD1Q05682 793 aaKnown RBP19.15■□□□□ 0.66
ECHDC1-220ENST00000528402 USP31Q70CQ4 1352 aa19.14■□□□□ 0.65
ECHDC1-220ENST00000528402 PPM1GO15355 546 aaPredicted RBP19.14■□□□□ 0.65
ECHDC1-220ENST00000528402 RSPH6AQ9H0K4 717 aa19.14■□□□□ 0.65
ECHDC1-220ENST00000528402 RBM19Q9Y4C8 960 aaKnown RBP19.14■□□□□ 0.65
ECHDC1-220ENST00000528402 OVOS2A0A0J9YW53 1432 aa19.13■□□□□ 0.65
ECHDC1-220ENST00000528402 OVOS2Q6IE36 1432 aa19.13■□□□□ 0.65
ECHDC1-220ENST00000528402 KCNA6P17658 529 aa19.13■□□□□ 0.65
ECHDC1-220ENST00000528402 RIPK4P57078 832 aa19.13■□□□□ 0.65
ECHDC1-220ENST00000528402 TRIM35Q9UPQ4 493 aa19.12■□□□□ 0.65
ECHDC1-220ENST00000528402 NALCNQ8IZF0 1738 aa19.11■□□□□ 0.65
ECHDC1-220ENST00000528402 FMN2Q9NZ56 1722 aa19.11■□□□□ 0.65
ECHDC1-220ENST00000528402 NGDNQ8NEJ9 315 aaKnown RBP19.11■□□□□ 0.65
ECHDC1-220ENST00000528402 EMILIN1Q9Y6C2 1016 aa19.11■□□□□ 0.65
ECHDC1-220ENST00000528402 MS4A1P11836 297 aa19.1■□□□□ 0.65
ECHDC1-220ENST00000528402 RARSP54136 660 aaKnown RBP19.1■□□□□ 0.65
ECHDC1-220ENST00000528402 LMOD3Q0VAK6 560 aa19.1■□□□□ 0.65
ECHDC1-220ENST00000528402 PRKAR2BP31323 418 aa19.09■□□□□ 0.65
ECHDC1-220ENST00000528402 NFE2L2Q16236 605 aa19.09■□□□□ 0.65
ECHDC1-220ENST00000528402 ZRANB1Q9UGI0 708 aa19.09■□□□□ 0.65
ECHDC1-220ENST00000528402 TCERG1O14776 1098 aaKnown RBP19.08■□□□□ 0.65
ECHDC1-220ENST00000528402 BCAR3O75815 825 aa19.08■□□□□ 0.65
ECHDC1-220ENST00000528402 ZNF428Q96B54 188 aa19.08■□□□□ 0.65
ECHDC1-220ENST00000528402 LRRC7Q96NW7 1537 aa19.08■□□□□ 0.65
ECHDC1-220ENST00000528402 NPHP4O75161 1426 aaPredicted RBP19.08■□□□□ 0.64
ECHDC1-220ENST00000528402 C20orf194Q5TEA3 1177 aa19.08■□□□□ 0.64
ECHDC1-220ENST00000528402 RGPD8O14715 1765 aaPredicted RBP19.07■□□□□ 0.64
ECHDC1-220ENST00000528402 CANXP27824 592 aaKnown RBP19.07■□□□□ 0.64
ECHDC1-220ENST00000528402 KIF24Q5T7B8 1368 aa19.07■□□□□ 0.64
ECHDC1-220ENST00000528402 NUTM2FA1L443 756 aa19.06■□□□□ 0.64
ECHDC1-220ENST00000528402 CENPQQ7L2Z9 268 aaPredicted RBP19.06■□□□□ 0.64
ECHDC1-220ENST00000528402 FBLN1P23142 703 aa19.05■□□□□ 0.64
ECHDC1-220ENST00000528402 RRS1Q15050 365 aaKnown RBP19.05■□□□□ 0.64
ECHDC1-220ENST00000528402 PMFBP1Q8TBY8 1022 aa19.05■□□□□ 0.64
ECHDC1-220ENST00000528402 FANCIQ9NVI1 1328 aa19.04■□□□□ 0.64
ECHDC1-220ENST00000528402 USP54Q70EL1 1684 aa19.04■□□□□ 0.64
ECHDC1-220ENST00000528402 ADGRL3Q9HAR2 1447 aa19.02■□□□□ 0.64
ECHDC1-220ENST00000528402 SBNO1A3KN83 1393 aa19.02■□□□□ 0.63
ECHDC1-220ENST00000528402 GNAI1P63096 354 aa19.01■□□□□ 0.63
ECHDC1-220ENST00000528402 HMOX1P09601 288 aa19■□□□□ 0.63
ECHDC1-220ENST00000528402 EIF4A2Q14240 407 aaKnown RBP19■□□□□ 0.63
ECHDC1-220ENST00000528402 ALDH1L2Q3SY69 923 aa19■□□□□ 0.63
ECHDC1-220ENST00000528402 IFT57Q9NWB7 429 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 1377.6 ms