RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 NME9Q86XW9 330 aa21.35■■□□□ 1.01
SNRNP35-204ENST00000527158 U2AF1L5P0DN76 240 aaPredicted RBP21.34■■□□□ 1.01
SNRNP35-204ENST00000527158 U2AF1Q01081 240 aaKnown RBP eCLIP21.34■■□□□ 1.01
SNRNP35-204ENST00000527158 COG3Q96JB2 828 aa21.34■■□□□ 1.01
SNRNP35-204ENST00000527158 MON2Q7Z3U7 1717 aa21.34■■□□□ 1.01
SNRNP35-204ENST00000527158 AKAP12Q02952 1782 aa21.34■■□□□ 1.01
SNRNP35-204ENST00000527158 RCAN3Q9UKA8 241 aa21.34■■□□□ 1.01
SNRNP35-204ENST00000527158 NPHP4O75161 1426 aaPredicted RBP21.34■■□□□ 1.01
SNRNP35-204ENST00000527158 TOPAZ1Q8N9V7 1692 aa21.33■■□□□ 1.01
SNRNP35-204ENST00000527158 ANP32EQ9BTT0 268 aa21.32■■□□□ 1
SNRNP35-204ENST00000527158 PNPLA6Q8IY17 1366 aa21.31■■□□□ 1
SNRNP35-204ENST00000527158 DIAPH1O60610 1272 aaKnown RBP21.3■■□□□ 1
SNRNP35-204ENST00000527158 POLKQ9UBT6 870 aa21.3■■□□□ 1
SNRNP35-204ENST00000527158 CHD2O14647 1828 aaKnown RBP21.3■■□□□ 1
SNRNP35-204ENST00000527158 TTC21BQ7Z4L5 1316 aa21.3■■□□□ 1
SNRNP35-204ENST00000527158 U2SURPO15042 1029 aaKnown RBP21.3■■□□□ 1
SNRNP35-204ENST00000527158 COL3A1P02461 1466 aaPredicted RBP21.29■■□□□ 1
SNRNP35-204ENST00000527158 USP6P35125 1406 aa21.29■■□□□ 1
SNRNP35-204ENST00000527158 ANKARQ7Z5J8 1434 aa21.29■■□□□ 1
SNRNP35-204ENST00000527158 AATKQ6ZMQ8 1374 aa21.29■■□□□ 1
SNRNP35-204ENST00000527158 PPM1GO15355 546 aaPredicted RBP21.29■■□□□ 1
SNRNP35-204ENST00000527158 ZRANB1Q9UGI0 708 aa21.29■■□□□ 1
SNRNP35-204ENST00000527158 NKTRP30414 1462 aaKnown RBP21.28■■□□□ 1
SNRNP35-204ENST00000527158 TCP11L2Q8N4U5 519 aa21.28■■□□□ 1
SNRNP35-204ENST00000527158 NGDNQ8NEJ9 315 aaKnown RBP21.28■■□□□ 1
SNRNP35-204ENST00000527158 RBM19Q9Y4C8 960 aaKnown RBP21.28■■□□□ 1
SNRNP35-204ENST00000527158 PMFBP1Q8TBY8 1022 aa21.27■■□□□ 1
SNRNP35-204ENST00000527158 SLFN5Q08AF3 891 aa21.27■■□□□ 1
SNRNP35-204ENST00000527158 PPP4R2Q9NY27 417 aa21.27■■□□□ 1
SNRNP35-204ENST00000527158 DUSP27Q5VZP5 1158 aa21.26■□□□□ 0.99
SNRNP35-204ENST00000527158 PNNQ9H307 717 aaKnown RBP21.26■□□□□ 0.99
SNRNP35-204ENST00000527158 FBLN1P23142 703 aa21.26■□□□□ 0.99
SNRNP35-204ENST00000527158 E9PSI1 815 aa21.25■□□□□ 0.99
SNRNP35-204ENST00000527158 NCBP3Q53F19 620 aaKnown RBP21.25■□□□□ 0.99
SNRNP35-204ENST00000527158 WWC1Q8IX03 1113 aa21.25■□□□□ 0.99
SNRNP35-204ENST00000527158 NEUROD2Q15784 382 aa21.24■□□□□ 0.99
SNRNP35-204ENST00000527158 TTC21AQ8NDW8 1320 aa21.24■□□□□ 0.99
SNRNP35-204ENST00000527158 RRP1P56182 461 aaKnown RBP21.24■□□□□ 0.99
SNRNP35-204ENST00000527158 TRMT2AQ8IZ69 625 aaKnown RBP21.23■□□□□ 0.99
SNRNP35-204ENST00000527158 IQSEC2Q5JU85 1478 aa21.23■□□□□ 0.99
SNRNP35-204ENST00000527158 NRKQ7Z2Y5 1582 aa21.23■□□□□ 0.99
SNRNP35-204ENST00000527158 EMILIN1Q9Y6C2 1016 aa21.23■□□□□ 0.99
SNRNP35-204ENST00000527158 CCDC27Q2M243 656 aa21.22■□□□□ 0.99
SNRNP35-204ENST00000527158 RRP7AQ9Y3A4 280 aaKnown RBP21.22■□□□□ 0.99
SNRNP35-204ENST00000527158 SSH2Q76I76 1423 aa21.22■□□□□ 0.99
SNRNP35-204ENST00000527158 MAP2P11137 1827 aaKnown RBP21.21■□□□□ 0.99
SNRNP35-204ENST00000527158 MAPK8IP3Q9UPT6 1336 aa21.21■□□□□ 0.99
SNRNP35-204ENST00000527158 FMN2Q9NZ56 1722 aa21.21■□□□□ 0.99
SNRNP35-204ENST00000527158 PLEKHF1Q96S99 279 aa21.2■□□□□ 0.98
SNRNP35-204ENST00000527158 CDK12Q9NYV4 1490 aaPredicted RBP21.2■□□□□ 0.98
SNRNP35-204ENST00000527158 FCHSD2O94868 740 aa21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 RRS1Q15050 365 aaKnown RBP21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 C14orf37Q86TY3 774 aa21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 WDR63Q8IWG1 891 aa21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 RBM33Q96EV2 1170 aaKnown RBP21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 PHF23Q9BUL5 403 aaPredicted RBP21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 OVOS2A0A0J9YW53 1432 aa21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 OVOS2Q6IE36 1432 aa21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 RGPD8O14715 1765 aaPredicted RBP21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 SPINK5Q9NQ38 1064 aaPredicted RBP21.19■□□□□ 0.98
SNRNP35-204ENST00000527158 ADGRL3Q9HAR2 1447 aa21.18■□□□□ 0.98
SNRNP35-204ENST00000527158 NALCNQ8IZF0 1738 aa21.18■□□□□ 0.98
SNRNP35-204ENST00000527158 NEFMP07197 916 aa21.17■□□□□ 0.98
SNRNP35-204ENST00000527158 IL13P35225 146 aa21.16■□□□□ 0.98
SNRNP35-204ENST00000527158 PHF8Q9UPP1 1060 aa21.16■□□□□ 0.98
SNRNP35-204ENST00000527158 DMRT2Q9Y5R5 561 aa21.16■□□□□ 0.98
SNRNP35-204ENST00000527158 USP31Q70CQ4 1352 aa21.15■□□□□ 0.98
SNRNP35-204ENST00000527158 FANCIQ9NVI1 1328 aa21.15■□□□□ 0.98
SNRNP35-204ENST00000527158 TMPOP42166 694 aaKnown RBP21.14■□□□□ 0.98
SNRNP35-204ENST00000527158 NWD1Q149M9 1564 aa21.14■□□□□ 0.97
SNRNP35-204ENST00000527158 PROSER2Q86WR7 435 aaPredicted RBP21.14■□□□□ 0.97
SNRNP35-204ENST00000527158 RSPH6AQ9H0K4 717 aa21.13■□□□□ 0.97
SNRNP35-204ENST00000527158 PRKAR2BP31323 418 aa21.12■□□□□ 0.97
SNRNP35-204ENST00000527158 NLRP6P59044 892 aa21.1■□□□□ 0.97
SNRNP35-204ENST00000527158 ESCO1Q5FWF5 840 aa21.1■□□□□ 0.97
SNRNP35-204ENST00000527158 HMOX1P09601 288 aa21.1■□□□□ 0.97
SNRNP35-204ENST00000527158 RIPK4P57078 832 aa21.1■□□□□ 0.97
SNRNP35-204ENST00000527158 B4GALNT3Q6L9W6 998 aa21.1■□□□□ 0.97
SNRNP35-204ENST00000527158 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.1■□□□□ 0.97
SNRNP35-204ENST00000527158 MYH16Q9H6N6 1097 aa21.1■□□□□ 0.97
SNRNP35-204ENST00000527158 PAK3O75914 559 aaPredicted RBP21.09■□□□□ 0.97
SNRNP35-204ENST00000527158 SOX12O15370 315 aa21.09■□□□□ 0.97
SNRNP35-204ENST00000527158 PLIN1O60240 522 aa21.09■□□□□ 0.97
SNRNP35-204ENST00000527158 ABTB2Q8N961 1025 aa21.08■□□□□ 0.97
SNRNP35-204ENST00000527158 LRRC7Q96NW7 1537 aa21.08■□□□□ 0.97
SNRNP35-204ENST00000527158 PSME1Q06323 249 aa21.07■□□□□ 0.96
SNRNP35-204ENST00000527158 TRIM35Q9UPQ4 493 aa21.07■□□□□ 0.96
SNRNP35-204ENST00000527158 KDM4FA0A1W2PPD8 638 aa21.06■□□□□ 0.96
SNRNP35-204ENST00000527158 HSPA2P54652 639 aa21.06■□□□□ 0.96
SNRNP35-204ENST00000527158 CCDC136Q96JN2 1154 aa21.06■□□□□ 0.96
SNRNP35-204ENST00000527158 C19orf44Q9H6X5 657 aa21.06■□□□□ 0.96
SNRNP35-204ENST00000527158 PIK3C2AO00443 1686 aa21.06■□□□□ 0.96
SNRNP35-204ENST00000527158 EIF4A2Q14240 407 aaKnown RBP21.06■□□□□ 0.96
SNRNP35-204ENST00000527158 MAP3K19Q56UN5 1328 aa21.05■□□□□ 0.96
SNRNP35-204ENST00000527158 EXOC6Q8TAG9 804 aa21.04■□□□□ 0.96
SNRNP35-204ENST00000527158 IL16Q14005 1332 aa21.04■□□□□ 0.96
SNRNP35-204ENST00000527158 HSP90AB2PQ58FF8 381 aa21.04■□□□□ 0.96
SNRNP35-204ENST00000527158 NFE2L2Q16236 605 aa21.03■□□□□ 0.96
SNRNP35-204ENST00000527158 SBNO1A3KN83 1393 aa21.03■□□□□ 0.96
SNRNP35-204ENST00000527158 AMPHP49418 695 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms