RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 U2AF1L5P0DN76 240 aaPredicted RBP20.86■□□□□ 0.93
USH1C-204ENST00000526313 U2AF1Q01081 240 aaKnown RBP eCLIP20.86■□□□□ 0.93
USH1C-204ENST00000526313 THEMISQ8N1K5 641 aaPredicted RBP20.86■□□□□ 0.93
USH1C-204ENST00000526313 AKAP12Q02952 1782 aa20.85■□□□□ 0.93
USH1C-204ENST00000526313 PLEKHF1Q96S99 279 aa20.85■□□□□ 0.93
USH1C-204ENST00000526313 PRR36Q9H6K5 1346 aa20.84■□□□□ 0.93
USH1C-204ENST00000526313 DIP2AQ14689 1571 aa20.83■□□□□ 0.92
USH1C-204ENST00000526313 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.83■□□□□ 0.92
USH1C-204ENST00000526313 CRBNQ96SW2 442 aa20.83■□□□□ 0.92
USH1C-204ENST00000526313 ZNF692Q9BU19 519 aaPredicted RBP20.83■□□□□ 0.92
USH1C-204ENST00000526313 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.81■□□□□ 0.92
USH1C-204ENST00000526313 POLKQ9UBT6 870 aa20.81■□□□□ 0.92
USH1C-204ENST00000526313 RRP7AQ9Y3A4 280 aaKnown RBP20.81■□□□□ 0.92
USH1C-204ENST00000526313 C20orf194Q5TEA3 1177 aa20.81■□□□□ 0.92
USH1C-204ENST00000526313 AATKQ6ZMQ8 1374 aa20.81■□□□□ 0.92
USH1C-204ENST00000526313 TOPAZ1Q8N9V7 1692 aa20.81■□□□□ 0.92
USH1C-204ENST00000526313 PTCH1Q13635 1447 aa20.8■□□□□ 0.92
USH1C-204ENST00000526313 DIAPH1O60610 1272 aaKnown RBP20.8■□□□□ 0.92
USH1C-204ENST00000526313 SLC26A8Q96RN1 970 aa20.8■□□□□ 0.92
USH1C-204ENST00000526313 NCKAP5LQ9HCH0 1330 aa20.8■□□□□ 0.92
USH1C-204ENST00000526313 ITSN1Q15811 1721 aa20.79■□□□□ 0.92
USH1C-204ENST00000526313 PLEKHG3A1L390 1219 aa20.79■□□□□ 0.92
USH1C-204ENST00000526313 NEUROD2Q15784 382 aa20.78■□□□□ 0.92
USH1C-204ENST00000526313 MAP2P11137 1827 aaKnown RBP20.78■□□□□ 0.92
USH1C-204ENST00000526313 NME9Q86XW9 330 aa20.77■□□□□ 0.92
USH1C-204ENST00000526313 AMOTL2Q9Y2J4 779 aa20.77■□□□□ 0.92
USH1C-204ENST00000526313 U2SURPO15042 1029 aaKnown RBP20.77■□□□□ 0.91
USH1C-204ENST00000526313 CEP170BQ9Y4F5 1589 aaPredicted RBP20.75■□□□□ 0.91
USH1C-204ENST00000526313 TMPOP42166 694 aaKnown RBP20.75■□□□□ 0.91
USH1C-204ENST00000526313 PNNQ9H307 717 aaKnown RBP20.75■□□□□ 0.91
USH1C-204ENST00000526313 XRN1Q8IZH2 1706 aaKnown RBP20.75■□□□□ 0.91
USH1C-204ENST00000526313 NRKQ7Z2Y5 1582 aa20.74■□□□□ 0.91
USH1C-204ENST00000526313 BCAR3O75815 825 aa20.74■□□□□ 0.91
USH1C-204ENST00000526313 FCHSD2O94868 740 aa20.74■□□□□ 0.91
USH1C-204ENST00000526313 CDK12Q9NYV4 1490 aaPredicted RBP20.74■□□□□ 0.91
USH1C-204ENST00000526313 MYT1Q01538 1121 aa20.74■□□□□ 0.91
USH1C-204ENST00000526313 PIK3R4Q99570 1358 aa20.73■□□□□ 0.91
USH1C-204ENST00000526313 FBLN1P23142 703 aa20.73■□□□□ 0.91
USH1C-204ENST00000526313 TRIM35Q9UPQ4 493 aa20.73■□□□□ 0.91
USH1C-204ENST00000526313 ZRANB1Q9UGI0 708 aa20.72■□□□□ 0.91
USH1C-204ENST00000526313 PLPPR3Q6T4P5 718 aa20.72■□□□□ 0.91
USH1C-204ENST00000526313 COG3Q96JB2 828 aa20.72■□□□□ 0.91
USH1C-204ENST00000526313 MYH16Q9H6N6 1097 aa20.72■□□□□ 0.91
USH1C-204ENST00000526313 RIMS1Q86UR5 1692 aaKnown RBP20.72■□□□□ 0.91
USH1C-204ENST00000526313 ADAMTSL3P82987 1691 aa20.71■□□□□ 0.91
USH1C-204ENST00000526313 PDE3AQ14432 1141 aa20.71■□□□□ 0.91
USH1C-204ENST00000526313 SSH2Q76I76 1423 aa20.71■□□□□ 0.91
USH1C-204ENST00000526313 ACEP12821 1306 aa20.7■□□□□ 0.9
USH1C-204ENST00000526313 IL16Q14005 1332 aa20.7■□□□□ 0.9
USH1C-204ENST00000526313 TTC21BQ7Z4L5 1316 aa20.7■□□□□ 0.9
USH1C-204ENST00000526313 RSPH6AQ9H0K4 717 aa20.7■□□□□ 0.9
USH1C-204ENST00000526313 MAPK8IP3Q9UPT6 1336 aa20.7■□□□□ 0.9
USH1C-204ENST00000526313 IL13P35225 146 aa20.69■□□□□ 0.9
USH1C-204ENST00000526313 EMILIN1Q9Y6C2 1016 aa20.69■□□□□ 0.9
USH1C-204ENST00000526313 USP6P35125 1406 aa20.69■□□□□ 0.9
USH1C-204ENST00000526313 RARSP54136 660 aaKnown RBP20.69■□□□□ 0.9
USH1C-204ENST00000526313 LRRC7Q96NW7 1537 aa20.69■□□□□ 0.9
USH1C-204ENST00000526313 FANCIQ9NVI1 1328 aa20.68■□□□□ 0.9
USH1C-204ENST00000526313 ZNF142P52746 1687 aaPredicted RBP20.68■□□□□ 0.9
USH1C-204ENST00000526313 CT47B1P0C2W7 299 aaPredicted RBP20.68■□□□□ 0.9
USH1C-204ENST00000526313 KDM2BQ8NHM5 1336 aa20.68■□□□□ 0.9
USH1C-204ENST00000526313 OVOS2A0A0J9YW53 1432 aa20.67■□□□□ 0.9
USH1C-204ENST00000526313 OVOS2Q6IE36 1432 aa20.67■□□□□ 0.9
USH1C-204ENST00000526313 PPM1GO15355 546 aaPredicted RBP20.65■□□□□ 0.9
USH1C-204ENST00000526313 NALCNQ8IZF0 1738 aa20.65■□□□□ 0.9
USH1C-204ENST00000526313 TCERG1O14776 1098 aaKnown RBP20.65■□□□□ 0.9
USH1C-204ENST00000526313 RIPK4P57078 832 aa20.65■□□□□ 0.9
USH1C-204ENST00000526313 USP31Q70CQ4 1352 aa20.64■□□□□ 0.89
USH1C-204ENST00000526313 ANKARQ7Z5J8 1434 aa20.63■□□□□ 0.89
USH1C-204ENST00000526313 SETD1BQ9UPS6 1966 aaKnown RBP20.63■□□□□ 0.89
USH1C-204ENST00000526313 PRKAR2BP31323 418 aa20.63■□□□□ 0.89
USH1C-204ENST00000526313 TTC21AQ8NDW8 1320 aa20.62■□□□□ 0.89
USH1C-204ENST00000526313 KCNA6P17658 529 aa20.62■□□□□ 0.89
USH1C-204ENST00000526313 NUTM2FA1L443 756 aa20.61■□□□□ 0.89
USH1C-204ENST00000526313 RRS1Q15050 365 aaKnown RBP20.61■□□□□ 0.89
USH1C-204ENST00000526313 CENPQQ7L2Z9 268 aaPredicted RBP20.61■□□□□ 0.89
USH1C-204ENST00000526313 ANKLE2Q86XL3 938 aa20.61■□□□□ 0.89
USH1C-204ENST00000526313 MS4A1P11836 297 aa20.6■□□□□ 0.89
USH1C-204ENST00000526313 CHD2O14647 1828 aaKnown RBP20.6■□□□□ 0.89
USH1C-204ENST00000526313 NFE2L2Q16236 605 aa20.6■□□□□ 0.89
USH1C-204ENST00000526313 RGPD8O14715 1765 aaPredicted RBP20.6■□□□□ 0.89
USH1C-204ENST00000526313 PHACTR3Q96KR7 559 aa20.59■□□□□ 0.89
USH1C-204ENST00000526313 FMN2Q9NZ56 1722 aa20.58■□□□□ 0.89
USH1C-204ENST00000526313 NEFMP07197 916 aa20.57■□□□□ 0.88
USH1C-204ENST00000526313 AAMPQ13685 434 aa20.57■□□□□ 0.88
USH1C-204ENST00000526313 TSR2Q969E8 191 aaKnown RBP20.57■□□□□ 0.88
USH1C-204ENST00000526313 HMOX1P09601 288 aa20.57■□□□□ 0.88
USH1C-204ENST00000526313 EXOSC9Q06265 439 aaKnown RBP20.57■□□□□ 0.88
USH1C-204ENST00000526313 PANK1Q8TE04 598 aa20.56■□□□□ 0.88
USH1C-204ENST00000526313 PMFBP1Q8TBY8 1022 aa20.55■□□□□ 0.88
USH1C-204ENST00000526313 PEAK1Q9H792 1746 aa20.55■□□□□ 0.88
USH1C-204ENST00000526313 DNAJC5Q9H3Z4 198 aa20.54■□□□□ 0.88
USH1C-204ENST00000526313 CANXP27824 592 aaKnown RBP20.54■□□□□ 0.88
USH1C-204ENST00000526313 EIF4A2Q14240 407 aaKnown RBP20.53■□□□□ 0.88
USH1C-204ENST00000526313 NGDNQ8NEJ9 315 aaKnown RBP20.53■□□□□ 0.88
USH1C-204ENST00000526313 FRAT1Q92837 279 aaPredicted RBP20.53■□□□□ 0.88
USH1C-204ENST00000526313 COG6Q9Y2V7 657 aa20.53■□□□□ 0.88
USH1C-204ENST00000526313 RGPD1P0DJD0 1748 aa20.52■□□□□ 0.88
USH1C-204ENST00000526313 CLUAP1Q96AJ1 413 aa20.52■□□□□ 0.88
USH1C-204ENST00000526313 RLBP1P12271 317 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms