RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	ARHGEF10	O15013	1369 aa		28.84	■■■□□ 2.21
CD44-222	ENST00000526025	PNPLA6	Q8IY17	1366 aa		28.84	■■■□□ 2.21
CD44-222	ENST00000526025	C11orf95	C9JLR9	678 aa	Predicted RBP	28.83	■■■□□ 2.21
CD44-222	ENST00000526025	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	28.83	■■■□□ 2.21
CD44-222	ENST00000526025		A0A1W2PP64	1363 aa		28.82	■■■□□ 2.2
CD44-222	ENST00000526025	KTN1	Q86UP2	1357 aa	Known RBP	28.82	■■■□□ 2.2
CD44-222	ENST00000526025	KIF7	Q2M1P5	1343 aa		28.81	■■■□□ 2.2
CD44-222	ENST00000526025	MED1	Q15648	1581 aa	Predicted RBP	28.8	■■■□□ 2.2
CD44-222	ENST00000526025	EDC4	Q6P2E9	1401 aa	Known RBP	28.79	■■■□□ 2.2
CD44-222	ENST00000526025	SPATA31A6	Q5VVP1	1343 aa		28.79	■■■□□ 2.2
CD44-222	ENST00000526025	CCDC7	Q96M83	1385 aa		28.78	■■■□□ 2.2
CD44-222	ENST00000526025	TTC21A	Q8NDW8	1320 aa		28.77	■■■□□ 2.2
CD44-222	ENST00000526025	ABCA3	Q99758	1704 aa		28.76	■■■□□ 2.19
CD44-222	ENST00000526025	CRYBG1	Q9Y4K1	1723 aa		28.76	■■■□□ 2.19
CD44-222	ENST00000526025	PIK3C2A	O00443	1686 aa		28.76	■■■□□ 2.19
CD44-222	ENST00000526025	USP54	Q70EL1	1684 aa		28.76	■■■□□ 2.19
CD44-222	ENST00000526025	TTC21B	Q7Z4L5	1316 aa		28.74	■■■□□ 2.19
CD44-222	ENST00000526025	WASHC2A	Q641Q2	1341 aa		28.73	■■■□□ 2.19
CD44-222	ENST00000526025	PAK3	O75914	559 aa	Predicted RBP	28.73	■■■□□ 2.19
CD44-222	ENST00000526025	POLR3GL	Q9BT43	218 aa		28.72	■■■□□ 2.19
CD44-222	ENST00000526025	MARF1	Q9Y4F3	1742 aa	Known RBP	28.69	■■■□□ 2.18
CD44-222	ENST00000526025	PHRF1	Q9P1Y6	1649 aa	Known RBP	28.69	■■■□□ 2.18
CD44-222	ENST00000526025	ABTB2	Q8N961	1025 aa		28.68	■■■□□ 2.18
CD44-222	ENST00000526025	KIF20B	Q96Q89	1820 aa		28.68	■■■□□ 2.18
CD44-222	ENST00000526025	LMOD2	Q6P5Q4	547 aa		28.67	■■■□□ 2.18
CD44-222	ENST00000526025	USP31	Q70CQ4	1352 aa		28.66	■■■□□ 2.18
CD44-222	ENST00000526025	USP19	O94966	1318 aa		28.66	■■■□□ 2.18
CD44-222	ENST00000526025	LRP6	O75581	1613 aa		28.65	■■■□□ 2.18
CD44-222	ENST00000526025	SLIT3	O75094	1523 aa		28.64	■■■□□ 2.18
CD44-222	ENST00000526025	NLRP13	Q86W25	1043 aa		28.64	■■■□□ 2.18
CD44-222	ENST00000526025	NSD3	Q9BZ95	1437 aa		28.63	■■■□□ 2.17
CD44-222	ENST00000526025	CARD14	Q9BXL6	1004 aa		28.63	■■■□□ 2.17
CD44-222	ENST00000526025	PANK3	Q9H999	370 aa		28.62	■■■□□ 2.17
CD44-222	ENST00000526025	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	28.61	■■■□□ 2.17
CD44-222	ENST00000526025	OVOS2	A0A0J9YW53	1432 aa		28.6	■■■□□ 2.17
CD44-222	ENST00000526025	OVOS2	Q6IE36	1432 aa		28.6	■■■□□ 2.17
CD44-222	ENST00000526025	NLRP6	P59044	892 aa		28.59	■■■□□ 2.17
CD44-222	ENST00000526025	ANKRD26	Q9UPS8	1709 aa		28.58	■■■□□ 2.17
CD44-222	ENST00000526025	NME9	Q86XW9	330 aa		28.57	■■■□□ 2.16
CD44-222	ENST00000526025	CGNL1	Q0VF96	1302 aa		28.57	■■■□□ 2.16
CD44-222	ENST00000526025	NUTM2B	A6NNL0	878 aa	Predicted RBP	28.56	■■■□□ 2.16
CD44-222	ENST00000526025	NUTM2E	B1AL46	878 aa	Predicted RBP	28.56	■■■□□ 2.16
CD44-222	ENST00000526025	NUTM2G	Q5VZR2	741 aa		28.56	■■■□□ 2.16
CD44-222	ENST00000526025	NUTM2A	Q8IVF1	878 aa	Predicted RBP	28.56	■■■□□ 2.16
CD44-222	ENST00000526025	CABLES1	Q8TDN4	633 aa		28.55	■■■□□ 2.16
CD44-222	ENST00000526025	FYB1	O15117	783 aa		28.54	■■■□□ 2.16
CD44-222	ENST00000526025	HAP1	P54257	671 aa	Predicted RBP	28.54	■■■□□ 2.16
CD44-222	ENST00000526025	NSD2	O96028	1365 aa		28.53	■■■□□ 2.16
CD44-222	ENST00000526025	KCNH5	Q8NCM2	988 aa		28.53	■■■□□ 2.16
CD44-222	ENST00000526025	NFAT5	O94916	1531 aa		28.53	■■■□□ 2.16
CD44-222	ENST00000526025	CPD	O75976	1380 aa		28.52	■■■□□ 2.16
CD44-222	ENST00000526025	COL14A1	Q05707	1796 aa	Known RBP	28.52	■■■□□ 2.16
CD44-222	ENST00000526025	GC	P02774	474 aa		28.51	■■■□□ 2.15
CD44-222	ENST00000526025	NWD2	Q9ULI1	1742 aa		28.5	■■■□□ 2.15
CD44-222	ENST00000526025	PER1	O15534	1290 aa	Predicted RBP	28.5	■■■□□ 2.15
CD44-222	ENST00000526025	COG3	Q96JB2	828 aa		28.5	■■■□□ 2.15
CD44-222	ENST00000526025	KNSTRN	Q9Y448	316 aa		28.5	■■■□□ 2.15
CD44-222	ENST00000526025	MEX3C	Q5U5Q3	659 aa	Known RBP	28.49	■■■□□ 2.15
CD44-222	ENST00000526025	ADAMTS2	O95450	1211 aa		28.48	■■■□□ 2.15
CD44-222	ENST00000526025	ZRANB1	Q9UGI0	708 aa		28.48	■■■□□ 2.15
CD44-222	ENST00000526025	ABCC6	O95255	1503 aa		28.48	■■■□□ 2.15
CD44-222	ENST00000526025	PLCH1	Q4KWH8	1693 aa		28.48	■■■□□ 2.15
CD44-222	ENST00000526025	NPC1L1	Q9UHC9	1359 aa		28.47	■■■□□ 2.15
CD44-222	ENST00000526025	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	28.46	■■■□□ 2.15
CD44-222	ENST00000526025	ZNF316	A6NFI3	1004 aa	Predicted RBP	28.46	■■■□□ 2.15
CD44-222	ENST00000526025	LTN1	O94822	1766 aa		28.45	■■■□□ 2.15
CD44-222	ENST00000526025	GGNBP2	Q9H3C7	697 aa		28.45	■■■□□ 2.14
CD44-222	ENST00000526025	SLIT2	O94813	1529 aa		28.44	■■■□□ 2.14
CD44-222	ENST00000526025	AMER1	Q5JTC6	1135 aa	Predicted RBP	28.44	■■■□□ 2.14
CD44-222	ENST00000526025	KIAA0232	Q92628	1395 aa		28.44	■■■□□ 2.14
CD44-222	ENST00000526025	LMO7	Q8WWI1	1683 aa		28.44	■■■□□ 2.14
CD44-222	ENST00000526025	PLEKHG5	O94827	1062 aa		28.43	■■■□□ 2.14
CD44-222	ENST00000526025	COL18A1	P39060	1754 aa		28.42	■■■□□ 2.14
CD44-222	ENST00000526025	FNBP4	Q8N3X1	1017 aa	Predicted RBP	28.42	■■■□□ 2.14
CD44-222	ENST00000526025	C8orf37	Q96NL8	207 aa		28.42	■■■□□ 2.14
CD44-222	ENST00000526025	PRDM11	Q9NQV5	511 aa		28.41	■■■□□ 2.14
CD44-222	ENST00000526025	NRAP	Q86VF7	1730 aa		28.4	■■■□□ 2.14
CD44-222	ENST00000526025	FAM83G	A6ND36	823 aa		28.4	■■■□□ 2.14
CD44-222	ENST00000526025	ARHGEF25	Q86VW2	580 aa		28.4	■■■□□ 2.14
CD44-222	ENST00000526025	NGLY1	Q96IV0	654 aa		28.4	■■■□□ 2.14
CD44-222	ENST00000526025	AATK	Q6ZMQ8	1374 aa		28.39	■■■□□ 2.14
CD44-222	ENST00000526025	ZC3H6	P61129	1189 aa	Known RBP	28.39	■■■□□ 2.14
CD44-222	ENST00000526025	AFF2	P51816	1311 aa		28.37	■■■□□ 2.13
CD44-222	ENST00000526025	MAP2	P11137	1827 aa	Known RBP	28.36	■■■□□ 2.13
CD44-222	ENST00000526025	BCL9L	Q86UU0	1499 aa		28.36	■■■□□ 2.13
CD44-222	ENST00000526025	ZNF772	Q68DY9	489 aa	Predicted RBP	28.35	■■■□□ 2.13
CD44-222	ENST00000526025	PHF23	Q9BUL5	403 aa	Predicted RBP	28.35	■■■□□ 2.13
CD44-222	ENST00000526025	KIF24	Q5T7B8	1368 aa		28.35	■■■□□ 2.13
CD44-222	ENST00000526025	RTL1	A6NKG5	1358 aa		28.33	■■■□□ 2.13
CD44-222	ENST00000526025	CAMTA1	Q9Y6Y1	1673 aa		28.32	■■■□□ 2.12
CD44-222	ENST00000526025	RGPD5	Q99666	1765 aa		28.32	■■■□□ 2.12
CD44-222	ENST00000526025	SOX12	O15370	315 aa		28.32	■■■□□ 2.12
CD44-222	ENST00000526025	DDX10	Q13206	875 aa	Known RBP	28.32	■■■□□ 2.12
CD44-222	ENST00000526025	UNC5CL	Q8IV45	518 aa		28.31	■■■□□ 2.12
CD44-222	ENST00000526025	USP21	Q9UK80	565 aa		28.31	■■■□□ 2.12
CD44-222	ENST00000526025	CHRNA2	Q15822	529 aa		28.3	■■■□□ 2.12
CD44-222	ENST00000526025	MORC1	Q86VD1	984 aa		28.3	■■■□□ 2.12
CD44-222	ENST00000526025	RGS17	Q9UGC6	210 aa	Predicted RBP	28.3	■■■□□ 2.12
CD44-222	ENST00000526025	BLM	P54132	1417 aa	Predicted RBP	28.29	■■■□□ 2.12
CD44-222	ENST00000526025	MAP3K19	Q56UN5	1328 aa		28.29	■■■□□ 2.12

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