RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 ABTB2Q8N961 1025 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 CARD14Q9BXL6 1004 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 WASHC2AQ641Q2 1341 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 TTC21BQ7Z4L5 1316 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 USP6P35125 1406 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 TNS3Q68CZ2 1445 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 CD163L1Q9NR16 1453 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 LRP6O75581 1613 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 TOPAZ1Q8N9V7 1692 aa6.39□□□□□ -1.39
CHMP4A-202ENST00000524955 NLRP6P59044 892 aa6.38□□□□□ -1.39
CHMP4A-202ENST00000524955 ZC3H6P61129 1189 aaKnown RBP6.38□□□□□ -1.39
CHMP4A-202ENST00000524955 C8orf37Q96NL8 207 aa6.38□□□□□ -1.39
CHMP4A-202ENST00000524955 GGNBP2Q9H3C7 697 aa6.38□□□□□ -1.39
CHMP4A-202ENST00000524955 PANK3Q9H999 370 aa6.38□□□□□ -1.39
CHMP4A-202ENST00000524955 TERF2IPQ9NYB0 399 aa6.38□□□□□ -1.39
CHMP4A-202ENST00000524955 CPSF1Q10570 1443 aaKnown RBP6.38□□□□□ -1.39
CHMP4A-202ENST00000524955 KIF1AQ12756 1690 aa6.38□□□□□ -1.39
CHMP4A-202ENST00000524955 SBNO1A3KN83 1393 aa6.37□□□□□ -1.39
CHMP4A-202ENST00000524955 CCDC7Q96M83 1385 aa6.37□□□□□ -1.39
CHMP4A-202ENST00000524955 CHRNA2Q15822 529 aa6.37□□□□□ -1.39
CHMP4A-202ENST00000524955 CDCA8Q53HL2 280 aa6.37□□□□□ -1.39
CHMP4A-202ENST00000524955 ZNF692Q9BU19 519 aaPredicted RBP6.37□□□□□ -1.39
CHMP4A-202ENST00000524955 SSH2Q76I76 1423 aa6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 NSD3Q9BZ95 1437 aa6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 ANKRD36BQ8N2N9 1353 aa6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 TNNT2P45379 298 aaPredicted RBP6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 NGLY1Q96IV0 654 aa6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 PUS7Q96PZ0 661 aaKnown RBP6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 PHF23Q9BUL5 403 aaPredicted RBP6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 ITSN1Q15811 1721 aa6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 TRPM3Q9HCF6 1732 aaPredicted RBP6.36□□□□□ -1.39
CHMP4A-202ENST00000524955 MED1Q15648 1581 aaPredicted RBP6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 ARHGEF10O15013 1369 aa6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 SPATA31A6Q5VVP1 1343 aa6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 FAM83GA6ND36 823 aa6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 FYB1O15117 783 aa6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 SLC24A1O60721 1099 aa6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 GCP02774 474 aa6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 DDX10Q13206 875 aaKnown RBP6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 NLRP13Q86W25 1043 aa6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 RGS17Q9UGC6 210 aaPredicted RBP6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 MYOM1P52179 1685 aa6.35□□□□□ -1.39
CHMP4A-202ENST00000524955 EDC4Q6P2E9 1401 aaKnown RBP6.34□□□□□ -1.39
CHMP4A-202ENST00000524955 KIAA0232Q92628 1395 aa6.34□□□□□ -1.39
CHMP4A-202ENST00000524955 AFF2P51816 1311 aa6.34□□□□□ -1.39
CHMP4A-202ENST00000524955 CC2D1BQ5T0F9 858 aaKnown RBP6.34□□□□□ -1.39
CHMP4A-202ENST00000524955 NINLQ9Y2I6 1382 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 SHPRHQ149N8 1683 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 ALS2Q96Q42 1657 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 USP19O94966 1318 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 TTC21AQ8NDW8 1320 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 RRS1Q15050 365 aaKnown RBP6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 POTEAQ6S8J7 498 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 COG3Q96JB2 828 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 PRDM11Q9NQV5 511 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 STRN4Q9NRL3 753 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 PIK3C2AO00443 1686 aa6.33□□□□□ -1.4
CHMP4A-202ENST00000524955 NRKQ7Z2Y5 1582 aa6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 AKAP12Q02952 1782 aa6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 PPM1GO15355 546 aaPredicted RBP6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 LTV1Q96GA3 475 aaPredicted RBP6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 BTG4Q9NY30 223 aa6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 USP21Q9UK80 565 aa6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 AXIN2Q9Y2T1 843 aa6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 CCDC9Q9Y3X0 531 aaKnown RBP6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 KNSTRNQ9Y448 316 aa6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 COL22A1Q8NFW1 1626 aaPredicted RBP6.32□□□□□ -1.4
CHMP4A-202ENST00000524955 CGNL1Q0VF96 1302 aa6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 MON2Q7Z3U7 1717 aa6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 ZNF316A6NFI3 1004 aaPredicted RBP6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 PER1O15534 1290 aaPredicted RBP6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 ILDR2Q71H61 639 aa6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 QTRT2Q9H974 415 aaKnown RBP6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 USP35Q9P2H5 1018 aa6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 EMILIN1Q9Y6C2 1016 aa6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 OVOS2A0A0J9YW53 1432 aa6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 OVOS2Q6IE36 1432 aa6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 USP31Q70CQ4 1352 aa6.31□□□□□ -1.4
CHMP4A-202ENST00000524955 MAP3K19Q56UN5 1328 aa6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 PHRF1Q9P1Y6 1649 aaKnown RBP6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 EVA1CP58658 441 aa6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 AMER1Q5JTC6 1135 aaPredicted RBP6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 LARP1Q6PKG0 1096 aaKnown RBP6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 MORC1Q86VD1 984 aa6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 ARHGEF25Q86VW2 580 aa6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 KCNH5Q8NCM2 988 aa6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 ABCA3Q99758 1704 aa6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 BRD4O60885 1362 aaPredicted RBP6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 SLIT3O75094 1523 aa6.3□□□□□ -1.4
CHMP4A-202ENST00000524955 BCL9LQ86UU0 1499 aa6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 A0A0G2JS52 829 aa6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 CSB-PGBD3P0DP91 1061 aa6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 AMPHP49418 695 aa6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 MYT1Q01538 1121 aa6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 UNC5CLQ8IV45 518 aa6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 FNBP4Q8N3X1 1017 aaPredicted RBP6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 MARF1Q9Y4F3 1742 aaKnown RBP6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 CRYBG1Q9Y4K1 1723 aa6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 NFAT5O94916 1531 aa6.29□□□□□ -1.4
CHMP4A-202ENST00000524955 HSP90AB2PQ58FF8 381 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms