RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 SYNMO15061 1565 aa9.26□□□□□ -0.93
HDAC9-227ENST00000523867 MADDQ8WXG6 1647 aa9.26□□□□□ -0.93
HDAC9-227ENST00000523867 ARHGEF40Q8TER5 1519 aa9.26□□□□□ -0.93
HDAC9-227ENST00000523867 GPATCH11Q8N954 259 aa9.26□□□□□ -0.93
HDAC9-227ENST00000523867 APAF1O14727 1248 aa9.25□□□□□ -0.93
HDAC9-227ENST00000523867 TRMT2AQ8IZ69 625 aaKnown RBP9.25□□□□□ -0.93
HDAC9-227ENST00000523867 PLCH2O75038 1416 aa9.25□□□□□ -0.93
HDAC9-227ENST00000523867 EIF3AQ14152 1382 aaKnown RBP9.25□□□□□ -0.93
HDAC9-227ENST00000523867 NPC1L1Q9UHC9 1359 aa9.25□□□□□ -0.93
HDAC9-227ENST00000523867 IQGAP1P46940 1657 aa9.25□□□□□ -0.93
HDAC9-227ENST00000523867 SETQ01105 290 aaPredicted RBP9.25□□□□□ -0.93
HDAC9-227ENST00000523867 DMTNQ08495 405 aa9.25□□□□□ -0.93
HDAC9-227ENST00000523867 POGZQ7Z3K3 1410 aa9.25□□□□□ -0.93
HDAC9-227ENST00000523867 SCAPERQ9BY12 1400 aa9.25□□□□□ -0.93
HDAC9-227ENST00000523867 NKTRP30414 1462 aaKnown RBP9.24□□□□□ -0.93
HDAC9-227ENST00000523867 FRMPD1Q5SYB0 1578 aa9.24□□□□□ -0.93
HDAC9-227ENST00000523867 FTSJ3Q8IY81 847 aaKnown RBP9.24□□□□□ -0.93
HDAC9-227ENST00000523867 SPINK5Q9NQ38 1064 aaPredicted RBP9.24□□□□□ -0.93
HDAC9-227ENST00000523867 SPAG9O60271 1321 aaKnown RBP9.24□□□□□ -0.93
HDAC9-227ENST00000523867 BCAR3O75815 825 aa9.23□□□□□ -0.93
HDAC9-227ENST00000523867 CCDC125Q86Z20 511 aa9.23□□□□□ -0.93
HDAC9-227ENST00000523867 TRAPPC8Q9Y2L5 1435 aa9.23□□□□□ -0.93
HDAC9-227ENST00000523867 TRPM2O94759 1503 aa9.23□□□□□ -0.93
HDAC9-227ENST00000523867 MAFGO15525 162 aa9.23□□□□□ -0.93
HDAC9-227ENST00000523867 BRD1O95696 1058 aa9.23□□□□□ -0.93
HDAC9-227ENST00000523867 TNNT2P45379 298 aaPredicted RBP9.23□□□□□ -0.93
HDAC9-227ENST00000523867 MYH16Q9H6N6 1097 aa9.23□□□□□ -0.93
HDAC9-227ENST00000523867 FANCAO15360 1455 aa9.23□□□□□ -0.93
HDAC9-227ENST00000523867 LOC102724159A0A0B4J2E5 919 aa9.22□□□□□ -0.93
HDAC9-227ENST00000523867 KIF20AO95235 890 aa9.22□□□□□ -0.93
HDAC9-227ENST00000523867 PWP2Q15269 919 aaKnown RBP9.22□□□□□ -0.93
HDAC9-227ENST00000523867 TAF3Q5VWG9 929 aa9.22□□□□□ -0.93
HDAC9-227ENST00000523867 KIAA1211Q6ZU35 1233 aa9.22□□□□□ -0.93
HDAC9-227ENST00000523867 DNAJC2Q99543 621 aaKnown RBP9.22□□□□□ -0.93
HDAC9-227ENST00000523867 LMTK3Q96Q04 1460 aa9.22□□□□□ -0.93
HDAC9-227ENST00000523867 VGFO15240 615 aaPredicted RBP9.22□□□□□ -0.93
HDAC9-227ENST00000523867 LMOD2Q6P5Q4 547 aa9.22□□□□□ -0.93
HDAC9-227ENST00000523867 PTPRTO14522 1441 aa9.22□□□□□ -0.93
HDAC9-227ENST00000523867 SPHKAPQ2M3C7 1700 aa9.22□□□□□ -0.93
HDAC9-227ENST00000523867 OFD1O75665 1012 aa9.21□□□□□ -0.93
HDAC9-227ENST00000523867 MCCP23508 829 aa9.21□□□□□ -0.93
HDAC9-227ENST00000523867 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.21□□□□□ -0.93
HDAC9-227ENST00000523867 AFAP1Q8N556 730 aa9.21□□□□□ -0.93
HDAC9-227ENST00000523867 NGEFQ8N5V2 710 aa9.21□□□□□ -0.93
HDAC9-227ENST00000523867 SGSM3Q96HU1 749 aa9.21□□□□□ -0.93
HDAC9-227ENST00000523867 ABCC1P33527 1531 aa9.21□□□□□ -0.94
HDAC9-227ENST00000523867 BECN1Q14457 450 aa9.21□□□□□ -0.94
HDAC9-227ENST00000523867 GTPBP4Q9BZE4 634 aaKnown RBP9.21□□□□□ -0.94
HDAC9-227ENST00000523867 RICTORQ6R327 1708 aa9.21□□□□□ -0.94
HDAC9-227ENST00000523867 SMARCA5O60264 1052 aaPredicted RBP9.2□□□□□ -0.94
HDAC9-227ENST00000523867 TRIM44Q96DX7 344 aaPredicted RBP9.2□□□□□ -0.94
HDAC9-227ENST00000523867 SLC24A3Q9HC58 644 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 CGNL1Q0VF96 1302 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 PDE3AQ14432 1141 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 CFAP70Q5T0N1 1121 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 MYOM1P52179 1685 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 CEP152O94986 1710 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 KANK1Q14678 1352 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 CLTCL1P53675 1640 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 RTEL1-TNFRSF6BF6WH68 1400 aa9.2□□□□□ -0.94
HDAC9-227ENST00000523867 KDM5AP29375 1690 aaKnown RBP9.2□□□□□ -0.94
HDAC9-227ENST00000523867 IGHDP01880 384 aa9.19□□□□□ -0.94
HDAC9-227ENST00000523867 RIPK4P57078 832 aa9.19□□□□□ -0.94
HDAC9-227ENST00000523867 FOXD4L6Q3SYB3 417 aaPredicted RBP9.19□□□□□ -0.94
HDAC9-227ENST00000523867 FOXD4L3Q6VB84 417 aaPredicted RBP9.19□□□□□ -0.94
HDAC9-227ENST00000523867 CARD14Q9BXL6 1004 aa9.19□□□□□ -0.94
HDAC9-227ENST00000523867 DMRT2Q9Y5R5 561 aa9.19□□□□□ -0.94
HDAC9-227ENST00000523867 TMTC2Q8N394 836 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 ZFYVE16Q7Z3T8 1539 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 LETM1O95202 739 aaPredicted RBP9.18□□□□□ -0.94
HDAC9-227ENST00000523867 CLUAP1Q96AJ1 413 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 PANK2Q9BZ23 570 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 ERBB4Q15303 1308 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 MAPK8IP3Q9UPT6 1336 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 NINLQ9Y2I6 1382 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 MKRN3Q13064 507 aaKnown RBP9.18□□□□□ -0.94
HDAC9-227ENST00000523867 PPP4R3BQ5MIZ7 849 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 GRPEL1Q9HAV7 217 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 TMEM51Q9NW97 253 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 COG6Q9Y2V7 657 aa9.18□□□□□ -0.94
HDAC9-227ENST00000523867 ERVK-7P63135 1459 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 RIMS1Q86UR5 1692 aaKnown RBP9.17□□□□□ -0.94
HDAC9-227ENST00000523867 KIF3BO15066 747 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 RGL2O15211 777 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 PANK1Q8TE04 598 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 PATL2C9JE40 543 aaKnown RBP9.17□□□□□ -0.94
HDAC9-227ENST00000523867 DYNC1I1O14576 645 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 MYCNP04198 464 aaPredicted RBP9.17□□□□□ -0.94
HDAC9-227ENST00000523867 VIRMAQ69YN4 1812 aaKnown RBP9.17□□□□□ -0.94
HDAC9-227ENST00000523867 EXOC8Q8IYI6 725 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 ADGRF5Q8IZF2 1346 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 TRAIPQ9BWF2 469 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 ANTXR1Q9H6X2 564 aa9.17□□□□□ -0.94
HDAC9-227ENST00000523867 KIAA1210Q9ULL0 1709 aa9.16□□□□□ -0.94
HDAC9-227ENST00000523867 TET3O43151 1660 aa9.16□□□□□ -0.94
HDAC9-227ENST00000523867 POLR3AO14802 1390 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-227ENST00000523867 VASPP50552 380 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-227ENST00000523867 FAM193AP78312 1265 aa9.16□□□□□ -0.94
HDAC9-227ENST00000523867 ZHX1Q9UKY1 873 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-227ENST00000523867 ZSCAN20P17040 1043 aaPredicted RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms