RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	PHF8	Q9UPP1	1060 aa		10.84	□□□□□ -0.67
LIMCH1-222	ENST00000515847	SHPRH	Q149N8	1683 aa		10.84	□□□□□ -0.67
LIMCH1-222	ENST00000515847	NPHP3	Q7Z494	1330 aa		10.84	□□□□□ -0.67
LIMCH1-222	ENST00000515847	JCAD	Q9P266	1359 aa		10.83	□□□□□ -0.68
LIMCH1-222	ENST00000515847	NINL	Q9Y2I6	1382 aa		10.83	□□□□□ -0.68
LIMCH1-222	ENST00000515847	FOXO3	O43524	673 aa		10.83	□□□□□ -0.68
LIMCH1-222	ENST00000515847	SRPK2	P78362	688 aa	Known RBP	10.83	□□□□□ -0.68
LIMCH1-222	ENST00000515847	TMF1	P82094	1093 aa		10.83	□□□□□ -0.68
LIMCH1-222	ENST00000515847	XPC	Q01831	940 aa	Predicted RBP	10.83	□□□□□ -0.68
LIMCH1-222	ENST00000515847	NUDT16	Q96DE0	195 aa	Known RBP	10.83	□□□□□ -0.68
LIMCH1-222	ENST00000515847	SOS2	Q07890	1332 aa	Predicted RBP	10.83	□□□□□ -0.68
LIMCH1-222	ENST00000515847	MED1	Q15648	1581 aa	Predicted RBP	10.82	□□□□□ -0.68
LIMCH1-222	ENST00000515847	PMFBP1	Q8TBY8	1022 aa		10.82	□□□□□ -0.68
LIMCH1-222	ENST00000515847	SP7	Q8TDD2	431 aa	Predicted RBP	10.82	□□□□□ -0.68
LIMCH1-222	ENST00000515847	CABP2	Q9NPB3	220 aa		10.82	□□□□□ -0.68
LIMCH1-222	ENST00000515847	ST20-MTHFS	A0A0A6YYL1	179 aa		10.81	□□□□□ -0.68
LIMCH1-222	ENST00000515847	HAX1	O00165	279 aa		10.81	□□□□□ -0.68
LIMCH1-222	ENST00000515847	PUS7	Q96PZ0	661 aa	Known RBP	10.81	□□□□□ -0.68
LIMCH1-222	ENST00000515847	PPIP5K1	Q6PFW1	1433 aa		10.81	□□□□□ -0.68
LIMCH1-222	ENST00000515847	PNPLA6	Q8IY17	1366 aa		10.8	□□□□□ -0.68
LIMCH1-222	ENST00000515847	LRRC59	Q96AG4	307 aa	Known RBP	10.8	□□□□□ -0.68
LIMCH1-222	ENST00000515847	TESK2	Q96S53	571 aa		10.8	□□□□□ -0.68
LIMCH1-222	ENST00000515847	TRPM3	Q9HCF6	1732 aa	Predicted RBP	10.8	□□□□□ -0.68
LIMCH1-222	ENST00000515847	TNS3	Q68CZ2	1445 aa		10.79	□□□□□ -0.68
LIMCH1-222	ENST00000515847	KRT28	Q7Z3Y7	464 aa		10.79	□□□□□ -0.68
LIMCH1-222	ENST00000515847	CCDC61	Q9Y6R9	512 aa		10.79	□□□□□ -0.68
LIMCH1-222	ENST00000515847	LRP6	O75581	1613 aa		10.79	□□□□□ -0.68
LIMCH1-222	ENST00000515847	BRD4	O60885	1362 aa	Predicted RBP	10.78	□□□□□ -0.68
LIMCH1-222	ENST00000515847	COL22A1	Q8NFW1	1626 aa	Predicted RBP	10.78	□□□□□ -0.68
LIMCH1-222	ENST00000515847	PSME1	Q06323	249 aa		10.78	□□□□□ -0.68
LIMCH1-222	ENST00000515847	NGDN	Q8NEJ9	315 aa	Known RBP	10.78	□□□□□ -0.68
LIMCH1-222	ENST00000515847	SBNO1	A3KN83	1393 aa		10.77	□□□□□ -0.68
LIMCH1-222	ENST00000515847	POLR3A	O14802	1390 aa	Predicted RBP	10.77	□□□□□ -0.68
LIMCH1-222	ENST00000515847	DISP3	Q9P2K9	1392 aa		10.77	□□□□□ -0.68
LIMCH1-222	ENST00000515847	ALS2	Q96Q42	1657 aa		10.77	□□□□□ -0.69
LIMCH1-222	ENST00000515847	PLEKHG3	A1L390	1219 aa		10.77	□□□□□ -0.69
LIMCH1-222	ENST00000515847	ACE	P12821	1306 aa		10.77	□□□□□ -0.69
LIMCH1-222	ENST00000515847	SPATA31A6	Q5VVP1	1343 aa		10.77	□□□□□ -0.69
LIMCH1-222	ENST00000515847	SPATA31A3	Q5VYP0	1347 aa		10.77	□□□□□ -0.69
LIMCH1-222	ENST00000515847	PRKAR2A	P13861	404 aa	Known RBP	10.76	□□□□□ -0.69
LIMCH1-222	ENST00000515847	CABP1	Q9NZU7	370 aa		10.76	□□□□□ -0.69
LIMCH1-222	ENST00000515847	AKAP12	Q02952	1782 aa		10.75	□□□□□ -0.69
LIMCH1-222	ENST00000515847	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.75	□□□□□ -0.69
LIMCH1-222	ENST00000515847	NUTM2E	B1AL46	878 aa	Predicted RBP	10.75	□□□□□ -0.69
LIMCH1-222	ENST00000515847	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.75	□□□□□ -0.69
LIMCH1-222	ENST00000515847	ABCA3	Q99758	1704 aa		10.75	□□□□□ -0.69
LIMCH1-222	ENST00000515847	HSPA5	P11021	654 aa	Known RBP	10.74	□□□□□ -0.69
LIMCH1-222	ENST00000515847	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.74	□□□□□ -0.69
LIMCH1-222	ENST00000515847	TERF2IP	Q9NYB0	399 aa		10.74	□□□□□ -0.69
LIMCH1-222	ENST00000515847	ARHGEF10	O15013	1369 aa		10.74	□□□□□ -0.69
LIMCH1-222	ENST00000515847	USP6	P35125	1406 aa		10.74	□□□□□ -0.69
LIMCH1-222	ENST00000515847	NRK	Q7Z2Y5	1582 aa		10.73	□□□□□ -0.69
LIMCH1-222	ENST00000515847	MON2	Q7Z3U7	1717 aa		10.73	□□□□□ -0.69
LIMCH1-222	ENST00000515847	PAK3	O75914	559 aa	Predicted RBP	10.73	□□□□□ -0.69
LIMCH1-222	ENST00000515847	LMOD2	Q6P5Q4	547 aa		10.73	□□□□□ -0.69
LIMCH1-222	ENST00000515847	CD163L1	Q9NR16	1453 aa		10.73	□□□□□ -0.69
LIMCH1-222	ENST00000515847	PLEKHG5	O94827	1062 aa		10.72	□□□□□ -0.69
LIMCH1-222	ENST00000515847	MEX3C	Q5U5Q3	659 aa	Known RBP	10.72	□□□□□ -0.69
LIMCH1-222	ENST00000515847	TMC1	Q8TDI8	760 aa		10.72	□□□□□ -0.69
LIMCH1-222	ENST00000515847	CPSF1	Q10570	1443 aa	Known RBP	10.72	□□□□□ -0.69
LIMCH1-222	ENST00000515847	MYOM1	P52179	1685 aa		10.72	□□□□□ -0.69
LIMCH1-222	ENST00000515847	CRYBG1	Q9Y4K1	1723 aa		10.72	□□□□□ -0.69
LIMCH1-222	ENST00000515847	SSH2	Q76I76	1423 aa		10.71	□□□□□ -0.69
LIMCH1-222	ENST00000515847	SLC12A5	Q9H2X9	1139 aa		10.71	□□□□□ -0.69
LIMCH1-222	ENST00000515847	MARF1	Q9Y4F3	1742 aa	Known RBP	10.71	□□□□□ -0.69
LIMCH1-222	ENST00000515847	PIK3C2A	O00443	1686 aa		10.7	□□□□□ -0.7
LIMCH1-222	ENST00000515847	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.7	□□□□□ -0.7
LIMCH1-222	ENST00000515847		A0A1W2PP64	1363 aa		10.7	□□□□□ -0.7
LIMCH1-222	ENST00000515847	KTN1	Q86UP2	1357 aa	Known RBP	10.7	□□□□□ -0.7
LIMCH1-222	ENST00000515847	ANKRD36B	Q8N2N9	1353 aa		10.7	□□□□□ -0.7
LIMCH1-222	ENST00000515847	ADAMTS2	O95450	1211 aa		10.7	□□□□□ -0.7
LIMCH1-222	ENST00000515847	CABLES1	Q8TDN4	633 aa		10.7	□□□□□ -0.7
LIMCH1-222	ENST00000515847	TTC21A	Q8NDW8	1320 aa		10.69	□□□□□ -0.7
LIMCH1-222	ENST00000515847	NUTM2G	Q5VZR2	741 aa		10.69	□□□□□ -0.7
LIMCH1-222	ENST00000515847	EVX2	Q03828	476 aa		10.68	□□□□□ -0.7
LIMCH1-222	ENST00000515847	C8orf37	Q96NL8	207 aa		10.68	□□□□□ -0.7
LIMCH1-222	ENST00000515847	POLR3GL	Q9BT43	218 aa		10.68	□□□□□ -0.7
LIMCH1-222	ENST00000515847	RGS17	Q9UGC6	210 aa	Predicted RBP	10.68	□□□□□ -0.7
LIMCH1-222	ENST00000515847	EDC4	Q6P2E9	1401 aa	Known RBP	10.67	□□□□□ -0.7
LIMCH1-222	ENST00000515847	TTC21B	Q7Z4L5	1316 aa		10.67	□□□□□ -0.7
LIMCH1-222	ENST00000515847	PRR29	P0C7W0	189 aa		10.67	□□□□□ -0.7
LIMCH1-222	ENST00000515847	HAP1	P54257	671 aa	Predicted RBP	10.67	□□□□□ -0.7
LIMCH1-222	ENST00000515847	ABTB2	Q8N961	1025 aa		10.67	□□□□□ -0.7
LIMCH1-222	ENST00000515847	USP19	O94966	1318 aa		10.66	□□□□□ -0.7
LIMCH1-222	ENST00000515847	AFF2	P51816	1311 aa		10.66	□□□□□ -0.7
LIMCH1-222	ENST00000515847	PLCH1	Q4KWH8	1693 aa		10.66	□□□□□ -0.7
LIMCH1-222	ENST00000515847	SLIT3	O75094	1523 aa		10.65	□□□□□ -0.7
LIMCH1-222	ENST00000515847	C11orf95	C9JLR9	678 aa	Predicted RBP	10.65	□□□□□ -0.7
LIMCH1-222	ENST00000515847	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.65	□□□□□ -0.7
LIMCH1-222	ENST00000515847	NGLY1	Q96IV0	654 aa		10.65	□□□□□ -0.7
LIMCH1-222	ENST00000515847	USP54	Q70EL1	1684 aa		10.65	□□□□□ -0.7
LIMCH1-222	ENST00000515847	NLRP6	P59044	892 aa		10.64	□□□□□ -0.71
LIMCH1-222	ENST00000515847	CHADL	Q6NUI6	762 aa		10.64	□□□□□ -0.71
LIMCH1-222	ENST00000515847	POTEA	Q6S8J7	498 aa		10.64	□□□□□ -0.71
LIMCH1-222	ENST00000515847	NLRP13	Q86W25	1043 aa		10.64	□□□□□ -0.71
LIMCH1-222	ENST00000515847	NME9	Q86XW9	330 aa		10.64	□□□□□ -0.71
LIMCH1-222	ENST00000515847	COL14A1	Q05707	1796 aa	Known RBP	10.64	□□□□□ -0.71
LIMCH1-222	ENST00000515847	NSD2	O96028	1365 aa		10.64	□□□□□ -0.71
LIMCH1-222	ENST00000515847	CCDC7	Q96M83	1385 aa		10.64	□□□□□ -0.71
LIMCH1-222	ENST00000515847	SLIT2	O94813	1529 aa		10.63	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms