RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 G3BP1Q13283 466 aaKnown RBP eCLIP15.94■□□□□ 0.142e-7■■■■□ 21.1
TCOF1-213ENST00000514442 ZNF692Q9BU19 519 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-213ENST00000514442 ZNF428Q96B54 188 aa15.93■□□□□ 0.14
TCOF1-213ENST00000514442 NOB1Q9ULX3 412 aaKnown RBP15.93■□□□□ 0.14
TCOF1-213ENST00000514442 HTATSF1O43719 755 aaKnown RBP15.93■□□□□ 0.14
TCOF1-213ENST00000514442 ANKLE2Q86XL3 938 aa15.93■□□□□ 0.14
TCOF1-213ENST00000514442 ANO2Q9NQ90 1003 aa15.93■□□□□ 0.14
TCOF1-213ENST00000514442 STRN4Q9NRL3 753 aa15.92■□□□□ 0.14
TCOF1-213ENST00000514442 CAVIN1Q6NZI2 390 aaKnown RBP15.92■□□□□ 0.14
TCOF1-213ENST00000514442 ATAD2Q6PL18 1390 aa15.92■□□□□ 0.14
TCOF1-213ENST00000514442 NUDT16Q96DE0 195 aaKnown RBP15.92■□□□□ 0.14
TCOF1-213ENST00000514442 UBTFL1P0CB47 393 aaPredicted RBP15.92■□□□□ 0.14
TCOF1-213ENST00000514442 MEX3CQ5U5Q3 659 aaKnown RBP15.92■□□□□ 0.14
TCOF1-213ENST00000514442 IDI1Q13907 227 aa15.91■□□□□ 0.14
TCOF1-213ENST00000514442 RAPGEF6Q8TEU7 1601 aa15.91■□□□□ 0.14
TCOF1-213ENST00000514442 CEBPAP49715 358 aaPredicted RBP15.91■□□□□ 0.14
TCOF1-213ENST00000514442 ZHX1Q9UKY1 873 aaPredicted RBP15.91■□□□□ 0.14
TCOF1-213ENST00000514442 REC8O95072 547 aa15.91■□□□□ 0.14
TCOF1-213ENST00000514442 CIZ1Q9ULV3 898 aaPredicted RBP15.9■□□□□ 0.14
TCOF1-213ENST00000514442 PDZRN3Q9UPQ7 1066 aa15.9■□□□□ 0.14
TCOF1-213ENST00000514442 PLEKHO1Q53GL0 409 aaPredicted RBP15.9■□□□□ 0.14
TCOF1-213ENST00000514442 ATP10BO94823 1461 aa15.9■□□□□ 0.14
TCOF1-213ENST00000514442 POGZQ7Z3K3 1410 aa15.89■□□□□ 0.13
TCOF1-213ENST00000514442 NUP153P49790 1475 aaKnown RBP15.89■□□□□ 0.13
TCOF1-213ENST00000514442 CLSTN1O94985 981 aa15.89■□□□□ 0.13
TCOF1-213ENST00000514442 CCDC30Q5VVM6 783 aa15.89■□□□□ 0.13
TCOF1-213ENST00000514442 SASS6Q6UVJ0 657 aa15.89■□□□□ 0.13
TCOF1-213ENST00000514442 PANK2Q9BZ23 570 aa15.89■□□□□ 0.13
TCOF1-213ENST00000514442 RPRD2Q5VT52 1461 aaKnown RBP15.89■□□□□ 0.13
TCOF1-213ENST00000514442 PDE3AQ14432 1141 aa15.89■□□□□ 0.13
TCOF1-213ENST00000514442 SLC4A2P04920 1241 aa15.88■□□□□ 0.13
TCOF1-213ENST00000514442 RBM33Q96EV2 1170 aaKnown RBP15.88■□□□□ 0.13
TCOF1-213ENST00000514442 RUFY2Q8WXA3 655 aa15.88■□□□□ 0.13
TCOF1-213ENST00000514442 FAM135AQ9P2D6 1515 aa15.88■□□□□ 0.13
TCOF1-213ENST00000514442 NOS1P29475 1434 aa15.87■□□□□ 0.13
TCOF1-213ENST00000514442 UGGT2Q9NYU1 1516 aa15.87■□□□□ 0.13
TCOF1-213ENST00000514442 NEUROD6Q96NK8 337 aa15.87■□□□□ 0.13
TCOF1-213ENST00000514442 TBC1D2Q9BYX2 928 aa15.87■□□□□ 0.13
TCOF1-213ENST00000514442 CCDC61Q9Y6R9 512 aa15.87■□□□□ 0.13
TCOF1-213ENST00000514442 H3BQV1 296 aa15.87■□□□□ 0.13
TCOF1-213ENST00000514442 IFFO2Q5TF58 517 aa15.87■□□□□ 0.13
TCOF1-213ENST00000514442 ZNF530Q6P9A1 599 aaPredicted RBP15.86■□□□□ 0.13
TCOF1-213ENST00000514442 C20orf194Q5TEA3 1177 aa15.86■□□□□ 0.13
TCOF1-213ENST00000514442 DYNC1I1O14576 645 aa15.86■□□□□ 0.13
TCOF1-213ENST00000514442 APPP05067 770 aa15.86■□□□□ 0.13
TCOF1-213ENST00000514442 INTS3Q68E01 1043 aaKnown RBP15.86■□□□□ 0.13
TCOF1-213ENST00000514442 THUMPD2Q9BTF0 503 aaKnown RBP15.86■□□□□ 0.13
TCOF1-213ENST00000514442 FAM184AQ8NB25 1140 aa15.85■□□□□ 0.13
TCOF1-213ENST00000514442 NINLQ9Y2I6 1382 aa15.85■□□□□ 0.13
TCOF1-213ENST00000514442 RNF214Q8ND24 703 aa15.85■□□□□ 0.13
TCOF1-213ENST00000514442 ZKSCAN1P17029 563 aaPredicted RBP15.85■□□□□ 0.13
TCOF1-213ENST00000514442 C8orf34Q49A92 452 aa15.85■□□□□ 0.13
TCOF1-213ENST00000514442 HDGFL1Q5TGJ6 251 aa15.85■□□□□ 0.13
TCOF1-213ENST00000514442 WDR63Q8IWG1 891 aa15.85■□□□□ 0.13
TCOF1-213ENST00000514442 DENND4BO75064 1496 aaPredicted RBP15.85■□□□□ 0.13
TCOF1-213ENST00000514442 FAM177BA6PVY3 158 aa15.85■□□□□ 0.13
TCOF1-213ENST00000514442 NME9Q86XW9 330 aa15.85■□□□□ 0.13
TCOF1-213ENST00000514442 SURF6O75683 361 aaKnown RBP15.84■□□□□ 0.13
TCOF1-213ENST00000514442 RBM42Q9BTD8 480 aaKnown RBP15.84■□□□□ 0.13
TCOF1-213ENST00000514442 TATP17735 454 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-213ENST00000514442 SF3A1Q15459 793 aaKnown RBP15.84■□□□□ 0.13
TCOF1-213ENST00000514442 WWC1Q8IX03 1113 aa15.84■□□□□ 0.13
TCOF1-213ENST00000514442 RASSF8Q8NHQ8 419 aa15.84■□□□□ 0.13
TCOF1-213ENST00000514442 CTTNBP2Q8WZ74 1663 aa15.84■□□□□ 0.13
TCOF1-213ENST00000514442 HSP90AB4PQ58FF6 505 aa15.83■□□□□ 0.13
TCOF1-213ENST00000514442 TEX35Q5T0J7 233 aa15.83■□□□□ 0.13
TCOF1-213ENST00000514442 CBX1P83916 185 aa15.83■□□□□ 0.12
TCOF1-213ENST00000514442 DHX29Q7Z478 1369 aaKnown RBP15.83■□□□□ 0.12
TCOF1-213ENST00000514442 DISP3Q9P2K9 1392 aa15.83■□□□□ 0.12
TCOF1-213ENST00000514442 ZC3H6P61129 1189 aaKnown RBP15.83■□□□□ 0.12
TCOF1-213ENST00000514442 DDX54Q8TDD1 881 aaKnown RBP15.82■□□□□ 0.12
TCOF1-213ENST00000514442 TSPY26PQ9H489 355 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 KIF3AQ9Y496 699 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 TPM3P06753 285 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 GNAI3P08754 354 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 TMPOP42166 694 aaKnown RBP15.82■□□□□ 0.12
TCOF1-213ENST00000514442 TOM1L2Q6ZVM7 507 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 VPS37DQ86XT2 251 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 BBXQ8WY36 941 aaPredicted RBP15.82■□□□□ 0.12
TCOF1-213ENST00000514442 RNF123Q5XPI4 1314 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 CDC45O75419 566 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 MIS18AQ9NYP9 233 aa15.82■□□□□ 0.12
TCOF1-213ENST00000514442 MBD3O95983 291 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 ERC2O15083 957 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 AEBP2Q6ZN18 517 aaPredicted RBP15.81■□□□□ 0.12
TCOF1-213ENST00000514442 SMAP1Q8IYB5 467 aaPredicted RBP15.81■□□□□ 0.12
TCOF1-213ENST00000514442 SYCP2Q9BX26 1530 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 ADAMTS12P58397 1594 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 PRPF40AO75400 957 aaKnown RBP15.81■□□□□ 0.12
TCOF1-213ENST00000514442 FCHSD2O94868 740 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 DCTN1Q14203 1278 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 ZNF592Q92610 1267 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 ATF7IPQ6VMQ6 1270 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 EMILIN1Q9Y6C2 1016 aa15.81■□□□□ 0.12
TCOF1-213ENST00000514442 SLFN5Q08AF3 891 aa15.8■□□□□ 0.12
TCOF1-213ENST00000514442 LRRFIP1Q32MZ4 808 aaKnown RBP15.8■□□□□ 0.12
TCOF1-213ENST00000514442 CREBRFQ8IUR6 639 aa15.8■□□□□ 0.12
TCOF1-213ENST00000514442 GOLGA6L1Q8N7Z2 621 aa15.8■□□□□ 0.12
TCOF1-213ENST00000514442 ASXL2Q76L83 1435 aa15.8■□□□□ 0.12
TCOF1-213ENST00000514442 KIF21AQ7Z4S6 1674 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms