RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 YEATS2Q9ULM3 1422 aa12.15□□□□□ -0.47
VCAN-210ENST00000513960 U2SURPO15042 1029 aaKnown RBP12.14□□□□□ -0.47
VCAN-210ENST00000513960 NINLQ9Y2I6 1382 aa12.14□□□□□ -0.47
VCAN-210ENST00000513960 CHMP5Q9NZZ3 219 aa12.14□□□□□ -0.47
VCAN-210ENST00000513960 NEXMIFQ5QGS0 1516 aa12.13□□□□□ -0.47
VCAN-210ENST00000513960 PMFBP1Q8TBY8 1022 aa12.13□□□□□ -0.47
VCAN-210ENST00000513960 PRAM1Q96QH2 718 aa12.13□□□□□ -0.47
VCAN-210ENST00000513960 ESPNB1AK53 854 aa12.13□□□□□ -0.47
VCAN-210ENST00000513960 MRE11P49959 708 aa12.13□□□□□ -0.47
VCAN-210ENST00000513960 GGNBP2Q9H3C7 697 aa12.13□□□□□ -0.47
VCAN-210ENST00000513960 GRPEL1Q9HAV7 217 aa12.13□□□□□ -0.47
VCAN-210ENST00000513960 RBM10P98175 930 aaKnown RBP12.12□□□□□ -0.47
VCAN-210ENST00000513960 C22orf23Q9BZE7 217 aa12.12□□□□□ -0.47
VCAN-210ENST00000513960 TNNQ9UQP3 1299 aa12.12□□□□□ -0.47
VCAN-210ENST00000513960 FAM69CQ0P6D2 419 aa12.12□□□□□ -0.47
VCAN-210ENST00000513960 FBXO31Q5XUX0 539 aaPredicted RBP12.12□□□□□ -0.47
VCAN-210ENST00000513960 RWDD1Q9H446 243 aaPredicted RBP12.12□□□□□ -0.47
VCAN-210ENST00000513960 ZFYVE9O95405 1425 aa12.12□□□□□ -0.47
VCAN-210ENST00000513960 RRP9O43818 475 aaKnown RBP12.12□□□□□ -0.47
VCAN-210ENST00000513960 HDGFL2Q7Z4V5 671 aaPredicted RBP12.12□□□□□ -0.47
VCAN-210ENST00000513960 ZC3H13Q5T200 1668 aaKnown RBP12.12□□□□□ -0.47
VCAN-210ENST00000513960 ATAD2Q6PL18 1390 aa12.12□□□□□ -0.47
VCAN-210ENST00000513960 SIGLEC1Q9BZZ2 1709 aa12.12□□□□□ -0.47
VCAN-210ENST00000513960 RARSP54136 660 aaKnown RBP12.11□□□□□ -0.47
VCAN-210ENST00000513960 TULP4Q9NRJ4 1543 aa12.11□□□□□ -0.47
VCAN-210ENST00000513960 CLCN1P35523 988 aa12.11□□□□□ -0.47
VCAN-210ENST00000513960 CCDC27Q2M243 656 aa12.11□□□□□ -0.47
VCAN-210ENST00000513960 PIK3C2BO00750 1634 aa12.11□□□□□ -0.47
VCAN-210ENST00000513960 A0A1W2PP64 1363 aa12.11□□□□□ -0.47
VCAN-210ENST00000513960 MSNP26038 577 aaKnown RBP12.11□□□□□ -0.47
VCAN-210ENST00000513960 USP19O94966 1318 aa12.1□□□□□ -0.47
VCAN-210ENST00000513960 DDX11L8A8MPP1 907 aa12.09□□□□□ -0.47
VCAN-210ENST00000513960 ARHGEF28Q8N1W1 1705 aaKnown RBP12.09□□□□□ -0.47
VCAN-210ENST00000513960 USP32Q8NFA0 1604 aa12.09□□□□□ -0.47
VCAN-210ENST00000513960 ITPRIPQ8IWB1 547 aa12.09□□□□□ -0.47
VCAN-210ENST00000513960 PHF23Q9BUL5 403 aaPredicted RBP12.09□□□□□ -0.47
VCAN-210ENST00000513960 FAM13BQ9NYF5 915 aa12.09□□□□□ -0.47
VCAN-210ENST00000513960 ABCC11Q96J66 1382 aa12.08□□□□□ -0.47
VCAN-210ENST00000513960 AAMPQ13685 434 aa12.08□□□□□ -0.48
VCAN-210ENST00000513960 TBC1D32Q96NH3 1257 aa12.08□□□□□ -0.48
VCAN-210ENST00000513960 CDK19Q9BWU1 502 aa12.08□□□□□ -0.48
VCAN-210ENST00000513960 YTHDC2Q9H6S0 1430 aaKnown RBP12.08□□□□□ -0.48
VCAN-210ENST00000513960 RICTORQ6R327 1708 aa12.08□□□□□ -0.48
VCAN-210ENST00000513960 GBP4Q96PP9 640 aa12.08□□□□□ -0.48
VCAN-210ENST00000513960 SHPRHQ149N8 1683 aa12.07□□□□□ -0.48
VCAN-210ENST00000513960 GOLGA6L22H0YM25 854 aa12.07□□□□□ -0.48
VCAN-210ENST00000513960 FYB1O15117 783 aa12.07□□□□□ -0.48
VCAN-210ENST00000513960 MLECQ14165 292 aa12.07□□□□□ -0.48
VCAN-210ENST00000513960 TPRNQ4KMQ1 711 aa12.07□□□□□ -0.48
VCAN-210ENST00000513960 NCBP3Q53F19 620 aaKnown RBP12.07□□□□□ -0.48
VCAN-210ENST00000513960 PCDHB15Q9Y5E8 787 aa12.07□□□□□ -0.48
VCAN-210ENST00000513960 KIAA1211Q6ZU35 1233 aa12.07□□□□□ -0.48
VCAN-210ENST00000513960 CABP1Q9NZU7 370 aa12.06□□□□□ -0.48
VCAN-210ENST00000513960 IQSEC2Q5JU85 1478 aa12.06□□□□□ -0.48
VCAN-210ENST00000513960 DIAPH1O60610 1272 aaKnown RBP12.06□□□□□ -0.48
VCAN-210ENST00000513960 ESF1Q9H501 851 aaKnown RBP12.06□□□□□ -0.48
VCAN-210ENST00000513960 TMPOP42166 694 aaKnown RBP12.05□□□□□ -0.48
VCAN-210ENST00000513960 ZKSCAN2Q63HK3 967 aa12.05□□□□□ -0.48
VCAN-210ENST00000513960 PPP6R1Q9UPN7 881 aa12.05□□□□□ -0.48
VCAN-210ENST00000513960 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.04□□□□□ -0.48
VCAN-210ENST00000513960 TSR2Q969E8 191 aaKnown RBP12.04□□□□□ -0.48
VCAN-210ENST00000513960 SMC4Q9NTJ3 1288 aa12.04□□□□□ -0.48
VCAN-210ENST00000513960 CT47B1P0C2W7 299 aaPredicted RBP12.04□□□□□ -0.48
VCAN-210ENST00000513960 R3HCC1Q9Y3T6 440 aaKnown RBP12.04□□□□□ -0.48
VCAN-210ENST00000513960 PREX1Q8TCU6 1659 aa12.04□□□□□ -0.48
VCAN-210ENST00000513960 RLBP1P12271 317 aa12.04□□□□□ -0.48
VCAN-210ENST00000513960 ANTXR1Q9H6X2 564 aa12.04□□□□□ -0.48
VCAN-210ENST00000513960 DDX49Q9Y6V7 483 aaKnown RBP12.04□□□□□ -0.48
VCAN-210ENST00000513960 PTPRMP28827 1452 aa12.04□□□□□ -0.48
VCAN-210ENST00000513960 TMEM131LA2VDJ0 1609 aa12.03□□□□□ -0.48
VCAN-210ENST00000513960 RIPK4P57078 832 aa12.03□□□□□ -0.48
VCAN-210ENST00000513960 EXOSC9Q06265 439 aaKnown RBP12.03□□□□□ -0.48
VCAN-210ENST00000513960 DZIP1LQ8IYY4 767 aaKnown RBP12.03□□□□□ -0.48
VCAN-210ENST00000513960 LNPKQ9C0E8 428 aa12.03□□□□□ -0.48
VCAN-210ENST00000513960 WAPLQ7Z5K2 1190 aa12.03□□□□□ -0.48
VCAN-210ENST00000513960 A0A0U1RQG5 324 aaPredicted RBP12.02□□□□□ -0.49
VCAN-210ENST00000513960 MYO5BQ9ULV0 1848 aa12.02□□□□□ -0.49
VCAN-210ENST00000513960 NASPP49321 788 aaPredicted RBP12.02□□□□□ -0.49
VCAN-210ENST00000513960 MVPQ14764 893 aaKnown RBP12.01□□□□□ -0.49
VCAN-210ENST00000513960 DNTTIP2Q5QJE6 756 aaKnown RBP12.01□□□□□ -0.49
VCAN-210ENST00000513960 PLEKHF1Q96S99 279 aa12.01□□□□□ -0.49
VCAN-210ENST00000513960 ERBB4Q15303 1308 aa12.01□□□□□ -0.49
VCAN-210ENST00000513960 FOXD4L5Q5VV16 416 aaPredicted RBP12.01□□□□□ -0.49
VCAN-210ENST00000513960 FOXD4L4Q8WXT5 416 aaPredicted RBP12.01□□□□□ -0.49
VCAN-210ENST00000513960 PTMAP06454 111 aaKnown RBP12.01□□□□□ -0.49
VCAN-210ENST00000513960 TNPO1Q92973 898 aaKnown RBP12.01□□□□□ -0.49
VCAN-210ENST00000513960 ALKQ9UM73 1620 aa12□□□□□ -0.49
VCAN-210ENST00000513960 TRIM35Q9UPQ4 493 aa12□□□□□ -0.49
VCAN-210ENST00000513960 FSD2A1L4K1 749 aa12□□□□□ -0.49
VCAN-210ENST00000513960 TPM2P07951 284 aa11.99□□□□□ -0.49
VCAN-210ENST00000513960 IL16Q14005 1332 aa11.99□□□□□ -0.49
VCAN-210ENST00000513960 RIMS2Q9UQ26 1411 aa11.99□□□□□ -0.49
VCAN-210ENST00000513960 FCHSD2O94868 740 aa11.99□□□□□ -0.49
VCAN-210ENST00000513960 MED14O60244 1454 aa11.99□□□□□ -0.49
VCAN-210ENST00000513960 HDGFP51858 240 aaKnown RBP11.99□□□□□ -0.49
VCAN-210ENST00000513960 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.99□□□□□ -0.49
VCAN-210ENST00000513960 IPO8O15397 1037 aaKnown RBP11.98□□□□□ -0.49
VCAN-210ENST00000513960 SSH1Q8WYL5 1049 aa11.98□□□□□ -0.49
VCAN-210ENST00000513960 GAS2L3Q86XJ1 694 aa11.98□□□□□ -0.49
VCAN-210ENST00000513960 DDX19BQ9UMR2 479 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms