RNA–Protein interactions for RNA: ENST00000512332.5

CPNE4-210, Transcript of copine 4, humanhuman

TSL 1 (best) BASIC

Gene CPNE4, Length 2,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-210ENST00000512332 TMPOP42166 694 aaKnown RBP11.88□□□□□ -0.51
CPNE4-210ENST00000512332 STAG3Q9UJ98 1225 aa11.88□□□□□ -0.51
CPNE4-210ENST00000512332 RTL5Q5HYW3 569 aaPredicted RBP11.87□□□□□ -0.51
CPNE4-210ENST00000512332 FRAT1Q92837 279 aaPredicted RBP11.87□□□□□ -0.51
CPNE4-210ENST00000512332 ATP7BP35670 1465 aa11.87□□□□□ -0.51
CPNE4-210ENST00000512332 DEKP35659 375 aaKnown RBP11.87□□□□□ -0.51
CPNE4-210ENST00000512332 RGS3P49796 1198 aa11.86□□□□□ -0.51
CPNE4-210ENST00000512332 TRIM35Q9UPQ4 493 aa11.86□□□□□ -0.51
CPNE4-210ENST00000512332 CDC42BPGQ6DT37 1551 aa11.86□□□□□ -0.51
CPNE4-210ENST00000512332 DIAPH1O60610 1272 aaKnown RBP11.86□□□□□ -0.51
CPNE4-210ENST00000512332 CABP1Q9NZU7 370 aa11.86□□□□□ -0.51
CPNE4-210ENST00000512332 RIMS2Q9UQ26 1411 aa11.85□□□□□ -0.51
CPNE4-210ENST00000512332 SETD1AO15047 1707 aaKnown RBP11.85□□□□□ -0.51
CPNE4-210ENST00000512332 FCHSD2O94868 740 aa11.85□□□□□ -0.51
CPNE4-210ENST00000512332 RLBP1P12271 317 aa11.85□□□□□ -0.51
CPNE4-210ENST00000512332 ZKSCAN2Q63HK3 967 aa11.85□□□□□ -0.51
CPNE4-210ENST00000512332 SIRT1Q96EB6 747 aa11.85□□□□□ -0.51
CPNE4-210ENST00000512332 RIMBP3CA6NJZ7 1639 aa11.85□□□□□ -0.51
CPNE4-210ENST00000512332 RIMBP3BA6NNM3 1639 aa11.85□□□□□ -0.51
CPNE4-210ENST00000512332 RIMBP3Q9UFD9 1639 aa11.85□□□□□ -0.51
CPNE4-210ENST00000512332 U2SURPO15042 1029 aaKnown RBP11.84□□□□□ -0.51
CPNE4-210ENST00000512332 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.84□□□□□ -0.51
CPNE4-210ENST00000512332 KIF20BQ96Q89 1820 aa11.84□□□□□ -0.51
CPNE4-210ENST00000512332 MVPQ14764 893 aaKnown RBP11.84□□□□□ -0.51
CPNE4-210ENST00000512332 RWDD1Q9H446 243 aaPredicted RBP11.84□□□□□ -0.51
CPNE4-210ENST00000512332 PCDHB15Q9Y5E8 787 aa11.84□□□□□ -0.51
CPNE4-210ENST00000512332 VIRMAQ69YN4 1812 aaKnown RBP11.83□□□□□ -0.52
CPNE4-210ENST00000512332 CPSF1Q10570 1443 aaKnown RBP11.82□□□□□ -0.52
CPNE4-210ENST00000512332 DZIP1LQ8IYY4 767 aaKnown RBP11.82□□□□□ -0.52
CPNE4-210ENST00000512332 RIPK4P57078 832 aa11.82□□□□□ -0.52
CPNE4-210ENST00000512332 EXOSC9Q06265 439 aaKnown RBP11.82□□□□□ -0.52
CPNE4-210ENST00000512332 ZNF428Q96B54 188 aa11.82□□□□□ -0.52
CPNE4-210ENST00000512332 HDGFP51858 240 aaKnown RBP11.81□□□□□ -0.52
CPNE4-210ENST00000512332 BCL2L13Q9BXK5 485 aa11.81□□□□□ -0.52
CPNE4-210ENST00000512332 POLKQ9UBT6 870 aa11.81□□□□□ -0.52
CPNE4-210ENST00000512332 DAXXQ9UER7 740 aaPredicted RBP11.81□□□□□ -0.52
CPNE4-210ENST00000512332 TECPR2O15040 1411 aa11.81□□□□□ -0.52
CPNE4-210ENST00000512332 FAM135BQ49AJ0 1406 aa11.81□□□□□ -0.52
CPNE4-210ENST00000512332 EDC4Q6P2E9 1401 aaKnown RBP11.81□□□□□ -0.52
CPNE4-210ENST00000512332 TSR2Q969E8 191 aaKnown RBP11.8□□□□□ -0.52
CPNE4-210ENST00000512332 TSPOAP1O95153 1857 aa11.8□□□□□ -0.52
CPNE4-210ENST00000512332 WASLO00401 505 aaPredicted RBP11.8□□□□□ -0.52
CPNE4-210ENST00000512332 BRPF1P55201 1214 aaPredicted RBP11.8□□□□□ -0.52
CPNE4-210ENST00000512332 WAPLQ7Z5K2 1190 aa11.8□□□□□ -0.52
CPNE4-210ENST00000512332 FTSJ3Q8IY81 847 aaKnown RBP11.8□□□□□ -0.52
CPNE4-210ENST00000512332 TNNQ9UQP3 1299 aa11.8□□□□□ -0.52
CPNE4-210ENST00000512332 NRXN3Q9Y4C0 1643 aa11.8□□□□□ -0.52
CPNE4-210ENST00000512332 PPIP5K1Q6PFW1 1433 aa11.8□□□□□ -0.52
CPNE4-210ENST00000512332 AATKQ6ZMQ8 1374 aa11.8□□□□□ -0.52
CPNE4-210ENST00000512332 NEFMP07197 916 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 ALDH1L2Q3SY69 923 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 ATF7IPQ6VMQ6 1270 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 SSH1Q8WYL5 1049 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 RSPH6AQ9H0K4 717 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 SMC4Q9NTJ3 1288 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 DDX19BQ9UMR2 479 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 USP19O94966 1318 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 IPO8O15397 1037 aaKnown RBP11.79□□□□□ -0.52
CPNE4-210ENST00000512332 HDAC1Q13547 482 aaPredicted RBP11.79□□□□□ -0.52
CPNE4-210ENST00000512332 BCL11AQ9H165 835 aa11.79□□□□□ -0.52
CPNE4-210ENST00000512332 LAS1LQ9Y4W2 734 aaKnown RBP11.79□□□□□ -0.52
CPNE4-210ENST00000512332 KIF16BQ96L93 1317 aa11.78□□□□□ -0.52
CPNE4-210ENST00000512332 TRIM27P14373 513 aa11.78□□□□□ -0.52
CPNE4-210ENST00000512332 PDZRN3Q9UPQ7 1066 aa11.78□□□□□ -0.52
CPNE4-210ENST00000512332 KNDC1Q76NI1 1749 aa11.78□□□□□ -0.52
CPNE4-210ENST00000512332 CALD1Q05682 793 aaKnown RBP11.78□□□□□ -0.52
CPNE4-210ENST00000512332 METP08581 1390 aa11.77□□□□□ -0.52
CPNE4-210ENST00000512332 LRRC7Q96NW7 1537 aa11.77□□□□□ -0.53
CPNE4-210ENST00000512332 CDK12Q9NYV4 1490 aaPredicted RBP11.77□□□□□ -0.53
CPNE4-210ENST00000512332 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.76□□□□□ -0.53
CPNE4-210ENST00000512332 CCDC61Q9Y6R9 512 aa11.76□□□□□ -0.53
CPNE4-210ENST00000512332 PRKAR2BP31323 418 aa11.76□□□□□ -0.53
CPNE4-210ENST00000512332 NFE2L2Q16236 605 aa11.76□□□□□ -0.53
CPNE4-210ENST00000512332 ZNF692Q9BU19 519 aaPredicted RBP11.76□□□□□ -0.53
CPNE4-210ENST00000512332 MAP2P11137 1827 aaKnown RBP11.75□□□□□ -0.53
CPNE4-210ENST00000512332 IL13P35225 146 aa11.75□□□□□ -0.53
CPNE4-210ENST00000512332 ESF1Q9H501 851 aaKnown RBP11.75□□□□□ -0.53
CPNE4-210ENST00000512332 NOB1Q9ULX3 412 aaKnown RBP11.75□□□□□ -0.53
CPNE4-210ENST00000512332 CPS1P31327 1500 aa11.75□□□□□ -0.53
CPNE4-210ENST00000512332 NUDT16Q96DE0 195 aaKnown RBP11.75□□□□□ -0.53
CPNE4-210ENST00000512332 SMC5Q8IY18 1101 aa11.74□□□□□ -0.53
CPNE4-210ENST00000512332 ARHGAP45Q92619 1136 aa11.74□□□□□ -0.53
CPNE4-210ENST00000512332 ZBTB40Q9NUA8 1239 aa11.74□□□□□ -0.53
CPNE4-210ENST00000512332 SEC24BO95487 1268 aa11.74□□□□□ -0.53
CPNE4-210ENST00000512332 MLECQ14165 292 aa11.74□□□□□ -0.53
CPNE4-210ENST00000512332 MON2Q7Z3U7 1717 aa11.73□□□□□ -0.53
CPNE4-210ENST00000512332 SLC4A3P48751 1232 aa11.73□□□□□ -0.53
CPNE4-210ENST00000512332 NFKBIBQ15653 356 aa11.73□□□□□ -0.53
CPNE4-210ENST00000512332 CHMP4BQ9H444 224 aaKnown RBP11.73□□□□□ -0.53
CPNE4-210ENST00000512332 UPF2Q9HAU5 1272 aaKnown RBP11.73□□□□□ -0.53
CPNE4-210ENST00000512332 IFT57Q9NWB7 429 aa11.73□□□□□ -0.53
CPNE4-210ENST00000512332 TNRQ92752 1358 aa11.73□□□□□ -0.53
CPNE4-210ENST00000512332 TMEM2Q9UHN6 1383 aa11.73□□□□□ -0.53
CPNE4-210ENST00000512332 ZNF853P0CG23 659 aa11.72□□□□□ -0.53
CPNE4-210ENST00000512332 GNAI1P63096 354 aa11.72□□□□□ -0.53
CPNE4-210ENST00000512332 LMOD3Q0VAK6 560 aa11.72□□□□□ -0.53
CPNE4-210ENST00000512332 BECN1Q14457 450 aa11.72□□□□□ -0.53
CPNE4-210ENST00000512332 TXNDC2Q86VQ3 553 aa11.72□□□□□ -0.53
CPNE4-210ENST00000512332 ITPRIPQ8IWB1 547 aa11.72□□□□□ -0.53
CPNE4-210ENST00000512332 COG3Q96JB2 828 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms