RNA–Protein interactions for RNA: ENST00000512258.1

MSH3-202, Transcript of mutS homolog 3, humanhuman

TSL 3

Gene MSH3, Length 677 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-202ENST00000512258 PTPRNQ16849 979 aa9.52□□□□□ -0.89
MSH3-202ENST00000512258 ZNF511Q8NB15 262 aa9.52□□□□□ -0.89
MSH3-202ENST00000512258 ADH1CP00326 375 aa9.51□□□□□ -0.89
MSH3-202ENST00000512258 FDX1P10109 184 aa9.51□□□□□ -0.89
MSH3-202ENST00000512258 WDR4P57081 412 aaKnown RBP9.51□□□□□ -0.89
MSH3-202ENST00000512258 VARSP26640 1264 aaKnown RBP9.5□□□□□ -0.89
MSH3-202ENST00000512258 KCNH2Q12809 1159 aa9.5□□□□□ -0.89
MSH3-202ENST00000512258 SCARF1Q14162 830 aa9.5□□□□□ -0.89
MSH3-202ENST00000512258 GPCPD1Q9NPB8 672 aa9.5□□□□□ -0.89
MSH3-202ENST00000512258 CCDC102AQ96A19 550 aa9.49□□□□□ -0.89
MSH3-202ENST00000512258 MINK1Q8N4C8 1332 aaPredicted RBP9.49□□□□□ -0.89
MSH3-202ENST00000512258 PLEKHG3A1L390 1219 aa9.48□□□□□ -0.89
MSH3-202ENST00000512258 C6orf229H3BNL8 230 aa9.48□□□□□ -0.89
MSH3-202ENST00000512258 PPFIA3O75145 1194 aa9.48□□□□□ -0.89
MSH3-202ENST00000512258 NUTM1Q86Y26 1132 aa9.47□□□□□ -0.89
MSH3-202ENST00000512258 KRT76Q01546 638 aa9.46□□□□□ -0.9
MSH3-202ENST00000512258 ZFAND3Q9H8U3 227 aa9.46□□□□□ -0.9
MSH3-202ENST00000512258 CLCN1P35523 988 aa9.45□□□□□ -0.9
MSH3-202ENST00000512258 CDK15Q96Q40 435 aa9.45□□□□□ -0.9
MSH3-202ENST00000512258 NDUFV2P19404 249 aa9.44□□□□□ -0.9
MSH3-202ENST00000512258 SPIRE2Q8WWL2 714 aa9.44□□□□□ -0.9
MSH3-202ENST00000512258 ITPKCQ96DU7 683 aa9.44□□□□□ -0.9
MSH3-202ENST00000512258 NR3C2P08235 984 aa9.43□□□□□ -0.9
MSH3-202ENST00000512258 PRR7Q8TB68 274 aa9.43□□□□□ -0.9
MSH3-202ENST00000512258 ZIC2O95409 532 aaPredicted RBP9.42□□□□□ -0.9
MSH3-202ENST00000512258 RASSF7Q02833 373 aa9.42□□□□□ -0.9
MSH3-202ENST00000512258 DESI1Q6ICB0 168 aa9.42□□□□□ -0.9
MSH3-202ENST00000512258 GPR161Q8N6U8 529 aaKnown RBP9.42□□□□□ -0.9
MSH3-202ENST00000512258 MOXD2PA6NHM9 499 aa9.41□□□□□ -0.9
MSH3-202ENST00000512258 MAN1A2O60476 641 aa9.41□□□□□ -0.9
MSH3-202ENST00000512258 C6orf118Q5T5N4 469 aa9.41□□□□□ -0.9
MSH3-202ENST00000512258 TMEM151AQ8N4L1 468 aa9.41□□□□□ -0.9
MSH3-202ENST00000512258 FOXJ1Q92949 421 aa9.41□□□□□ -0.9
MSH3-202ENST00000512258 CECR2Q9BXF3 1484 aa9.4□□□□□ -0.9
MSH3-202ENST00000512258 FAM174AQ8TBP5 190 aa9.4□□□□□ -0.9
MSH3-202ENST00000512258 GDF11O95390 407 aa9.39□□□□□ -0.91
MSH3-202ENST00000512258 GRM5P41594 1212 aa9.39□□□□□ -0.91
MSH3-202ENST00000512258 C4orf48Q5BLP8 95 aa9.39□□□□□ -0.91
MSH3-202ENST00000512258 DNMT3LQ9UJW3 386 aa9.39□□□□□ -0.91
MSH3-202ENST00000512258 ADAMTS8Q9UP79 889 aa9.39□□□□□ -0.91
MSH3-202ENST00000512258 SOS2Q07890 1332 aaPredicted RBP9.38□□□□□ -0.91
MSH3-202ENST00000512258 MTMR2Q13614 643 aa9.37□□□□□ -0.91
MSH3-202ENST00000512258 LYPD8Q6UX82 237 aa9.37□□□□□ -0.91
MSH3-202ENST00000512258 LINC00528Q8N1L1 170 aa9.37□□□□□ -0.91
MSH3-202ENST00000512258 MEIOBQ8N635 442 aa9.37□□□□□ -0.91
MSH3-202ENST00000512258 F12P00748 615 aaPredicted RBP9.36□□□□□ -0.91
MSH3-202ENST00000512258 SSTR3P32745 418 aaPredicted RBP9.36□□□□□ -0.91
MSH3-202ENST00000512258 NR5A1Q13285 461 aa9.35□□□□□ -0.91
MSH3-202ENST00000512258 CNTNAP3BQ96NU0 1288 aa9.35□□□□□ -0.91
MSH3-202ENST00000512258 CNTNAP3Q9BZ76 1288 aa9.35□□□□□ -0.91
MSH3-202ENST00000512258 SPDYE5A6NIY4 337 aa9.34□□□□□ -0.91
MSH3-202ENST00000512258 BMP2P12643 396 aa9.34□□□□□ -0.91
MSH3-202ENST00000512258 ARID5BQ14865 1188 aa9.34□□□□□ -0.91
MSH3-202ENST00000512258 ZNF385CQ66K41 422 aaPredicted RBP9.34□□□□□ -0.91
MSH3-202ENST00000512258 MAP10Q9P2G4 905 aa9.34□□□□□ -0.91
MSH3-202ENST00000512258 CFAP99D6REC4 459 aa9.33□□□□□ -0.92
MSH3-202ENST00000512258 EIF4G1Q04637 1599 aaKnown RBP9.33□□□□□ -0.92
MSH3-202ENST00000512258 CTHP32929 405 aa9.32□□□□□ -0.92
MSH3-202ENST00000512258 RNFT1Q5M7Z0 435 aa9.31□□□□□ -0.92
MSH3-202ENST00000512258 MROH2BQ7Z745 1585 aa9.31□□□□□ -0.92
MSH3-202ENST00000512258 WHAMMQ8TF30 809 aa9.3□□□□□ -0.92
MSH3-202ENST00000512258 NANOS1Q8WY41 292 aaKnown RBP9.3□□□□□ -0.92
MSH3-202ENST00000512258 COL25A1Q9BXS0 654 aaPredicted RBP9.3□□□□□ -0.92
MSH3-202ENST00000512258 PCDHB15Q9Y5E8 787 aa9.3□□□□□ -0.92
MSH3-202ENST00000512258 RNF225M0QZC1 329 aaPredicted RBP9.29□□□□□ -0.92
MSH3-202ENST00000512258 ARHGEF15O94989 841 aa9.29□□□□□ -0.92
MSH3-202ENST00000512258 PTSQ03393 145 aa9.29□□□□□ -0.92
MSH3-202ENST00000512258 C1QTNF2Q9BXJ5 285 aa9.29□□□□□ -0.92
MSH3-202ENST00000512258 SMARCA4P51532 1647 aa9.29□□□□□ -0.92
MSH3-202ENST00000512258 SPTLC1O15269 473 aa9.28□□□□□ -0.92
MSH3-202ENST00000512258 PLCB2Q00722 1185 aa9.28□□□□□ -0.92
MSH3-202ENST00000512258 KRI1Q8N9T8 703 aaKnown RBP9.28□□□□□ -0.92
MSH3-202ENST00000512258 BAZ1AQ9NRL2 1556 aaPredicted RBP9.28□□□□□ -0.92
MSH3-202ENST00000512258 UPP2O95045 317 aa9.27□□□□□ -0.93
MSH3-202ENST00000512258 GJA5P36382 358 aa9.27□□□□□ -0.93
MSH3-202ENST00000512258 RSBN1LQ6PCB5 846 aaPredicted RBP9.27□□□□□ -0.93
MSH3-202ENST00000512258 KDM2AQ9Y2K7 1162 aa9.27□□□□□ -0.93
MSH3-202ENST00000512258 SLURP2P0DP57 97 aa9.26□□□□□ -0.93
MSH3-202ENST00000512258 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.26□□□□□ -0.93
MSH3-202ENST00000512258 SH3RF1Q7Z6J0 888 aa9.26□□□□□ -0.93
MSH3-202ENST00000512258 DNMT3AQ9Y6K1 912 aaPredicted RBP9.26□□□□□ -0.93
MSH3-202ENST00000512258 CC2D2AQ9P2K1 1620 aa9.25□□□□□ -0.93
MSH3-202ENST00000512258 PER1O15534 1290 aaPredicted RBP9.25□□□□□ -0.93
MSH3-202ENST00000512258 HRCP23327 699 aa9.25□□□□□ -0.93
MSH3-202ENST00000512258 FSHRP23945 695 aa9.25□□□□□ -0.93
MSH3-202ENST00000512258 BPHLQ86WA6 291 aaPredicted RBP9.25□□□□□ -0.93
MSH3-202ENST00000512258 TSEN34Q9BSV6 310 aaKnown RBP9.25□□□□□ -0.93
MSH3-202ENST00000512258 RSF1Q96T23 1441 aaPredicted RBP9.24□□□□□ -0.93
MSH3-202ENST00000512258 TTLL8A6PVC2 850 aa9.24□□□□□ -0.93
MSH3-202ENST00000512258 GPAT2Q6NUI2 795 aa9.24□□□□□ -0.93
MSH3-202ENST00000512258 TBC1D2Q9BYX2 928 aa9.24□□□□□ -0.93
MSH3-202ENST00000512258 MAP4K5Q9Y4K4 846 aa9.24□□□□□ -0.93
MSH3-202ENST00000512258 IRS1P35568 1242 aa9.23□□□□□ -0.93
MSH3-202ENST00000512258 AMHR2Q16671 573 aa9.23□□□□□ -0.93
MSH3-202ENST00000512258 SVOPQ8N4V2 548 aa9.23□□□□□ -0.93
MSH3-202ENST00000512258 CCDC155Q8N6L0 562 aa9.23□□□□□ -0.93
MSH3-202ENST00000512258 BEGAINQ9BUH8 593 aa9.23□□□□□ -0.93
MSH3-202ENST00000512258 SLC35F4A4IF30 521 aa9.22□□□□□ -0.93
MSH3-202ENST00000512258 AGERQ15109 404 aa9.22□□□□□ -0.93
MSH3-202ENST00000512258 GIGYF2Q6Y7W6 1299 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms