RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 MAP10Q9P2G4 905 aa5.94□□□□□ -1.46
LIMCH1-212ENST00000511424 PER1O15534 1290 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-212ENST00000511424 SH3BP2P78314 561 aa5.93□□□□□ -1.46
LIMCH1-212ENST00000511424 SKOR1P84550 965 aa5.93□□□□□ -1.46
LIMCH1-212ENST00000511424 PROCA1Q8NCQ7 364 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-212ENST00000511424 PCMTD1Q96MG8 357 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-212ENST00000511424 TOR4AQ9NXH8 423 aa5.93□□□□□ -1.46
LIMCH1-212ENST00000511424 WASF2Q9Y6W5 498 aa5.93□□□□□ -1.46
LIMCH1-212ENST00000511424 PLEKHG3A1L390 1219 aa5.92□□□□□ -1.46
LIMCH1-212ENST00000511424 AP1G2O75843 785 aa5.92□□□□□ -1.46
LIMCH1-212ENST00000511424 MYT1Q01538 1121 aa5.92□□□□□ -1.46
LIMCH1-212ENST00000511424 ZNF511Q8NB15 262 aa5.92□□□□□ -1.46
LIMCH1-212ENST00000511424 J3QL48 77 aa5.91□□□□□ -1.46
LIMCH1-212ENST00000511424 AXIN1O15169 862 aa5.91□□□□□ -1.46
LIMCH1-212ENST00000511424 CTDSPL2Q05D32 466 aa5.91□□□□□ -1.46
LIMCH1-212ENST00000511424 ARID5BQ14865 1188 aa5.91□□□□□ -1.46
LIMCH1-212ENST00000511424 ZNF787Q6DD87 383 aa5.91□□□□□ -1.46
LIMCH1-212ENST00000511424 ARMC2Q8NEN0 867 aa5.91□□□□□ -1.46
LIMCH1-212ENST00000511424 ST8SIA5O15466 376 aa5.9□□□□□ -1.46
LIMCH1-212ENST00000511424 BRPF1P55201 1214 aaPredicted RBP5.9□□□□□ -1.46
LIMCH1-212ENST00000511424 VARSP26640 1264 aaKnown RBP5.89□□□□□ -1.47
LIMCH1-212ENST00000511424 NBPF14Q5TI25 921 aa5.89□□□□□ -1.47
LIMCH1-212ENST00000511424 FAM174AQ8TBP5 190 aa5.89□□□□□ -1.47
LIMCH1-212ENST00000511424 MAGEB6P1A0A0J9YX57 407 aa5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 LCE2BO14633 110 aa5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 F12P00748 615 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 SMPD1P17405 629 aa5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 CTC1Q2NKJ3 1217 aa5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 BPHLQ86WA6 291 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 LRRN4Q8WUT4 740 aa5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 FOXJ1Q92949 421 aa5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 AAASQ9NRG9 546 aa5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 TLL2Q9Y6L7 1015 aa5.88□□□□□ -1.47
LIMCH1-212ENST00000511424 PRKCSHP14314 528 aaPredicted RBP5.87□□□□□ -1.47
LIMCH1-212ENST00000511424 HPS1Q92902 700 aa5.87□□□□□ -1.47
LIMCH1-212ENST00000511424 CARD14Q9BXL6 1004 aa5.87□□□□□ -1.47
LIMCH1-212ENST00000511424 RFC5P40937 340 aa5.86□□□□□ -1.47
LIMCH1-212ENST00000511424 NR6A1Q15406 480 aa5.86□□□□□ -1.47
LIMCH1-212ENST00000511424 PNMA1Q8ND90 353 aa5.86□□□□□ -1.47
LIMCH1-212ENST00000511424 AVPP01185 164 aa5.85□□□□□ -1.47
LIMCH1-212ENST00000511424 USP17L8P0C7I0 530 aa5.85□□□□□ -1.47
LIMCH1-212ENST00000511424 PPP2R2DQ66LE6 453 aa5.85□□□□□ -1.47
LIMCH1-212ENST00000511424 GOPCQ9HD26 462 aa5.85□□□□□ -1.47
LIMCH1-212ENST00000511424 SIAH2O43255 324 aa5.84□□□□□ -1.47
LIMCH1-212ENST00000511424 FBXO31Q5XUX0 539 aaPredicted RBP5.84□□□□□ -1.47
LIMCH1-212ENST00000511424 ZBTB33Q86T24 672 aa5.84□□□□□ -1.47
LIMCH1-212ENST00000511424 C11orf95C9JLR9 678 aaPredicted RBP5.83□□□□□ -1.48
LIMCH1-212ENST00000511424 CAPN5O15484 640 aaPredicted RBP5.83□□□□□ -1.48
LIMCH1-212ENST00000511424 NNTQ13423 1086 aa5.83□□□□□ -1.48
LIMCH1-212ENST00000511424 TMEM259Q4ZIN3 620 aa5.83□□□□□ -1.48
LIMCH1-212ENST00000511424 CRIPAKQ8N1N5 446 aa5.83□□□□□ -1.48
LIMCH1-212ENST00000511424 ARHGAP9Q9BRR9 750 aa5.83□□□□□ -1.48
LIMCH1-212ENST00000511424 DACH1Q9UI36 760 aa5.83□□□□□ -1.48
LIMCH1-212ENST00000511424 FKBPLQ9UIM3 349 aa5.83□□□□□ -1.48
LIMCH1-212ENST00000511424 ADH1CP00326 375 aa5.82□□□□□ -1.48
LIMCH1-212ENST00000511424 VASH1Q7L8A9 365 aaPredicted RBP5.82□□□□□ -1.48
LIMCH1-212ENST00000511424 GPKOWQ92917 476 aaPredicted RBP eCLIP5.82□□□□□ -1.48
LIMCH1-212ENST00000511424 GMPR2Q9P2T1 348 aaKnown RBP5.82□□□□□ -1.48
LIMCH1-212ENST00000511424 POTECB2RU33 542 aa5.81□□□□□ -1.48
LIMCH1-212ENST00000511424 SMCPP49901 116 aaPredicted RBP5.81□□□□□ -1.48
LIMCH1-212ENST00000511424 WDR4P57081 412 aaKnown RBP5.81□□□□□ -1.48
LIMCH1-212ENST00000511424 PTK2Q05397 1052 aa5.81□□□□□ -1.48
LIMCH1-212ENST00000511424 C4orf48Q5BLP8 95 aa5.81□□□□□ -1.48
LIMCH1-212ENST00000511424 PDXDC2PQ6P474 469 aa5.81□□□□□ -1.48
LIMCH1-212ENST00000511424 SLC10A4Q96EP9 437 aa5.81□□□□□ -1.48
LIMCH1-212ENST00000511424 ATP13A2Q9NQ11 1180 aa5.81□□□□□ -1.48
LIMCH1-212ENST00000511424 BMP1P13497 986 aa5.8□□□□□ -1.48
LIMCH1-212ENST00000511424 FSHRP23945 695 aa5.8□□□□□ -1.48
LIMCH1-212ENST00000511424 EPS8L1Q8TE68 723 aa5.8□□□□□ -1.48
LIMCH1-212ENST00000511424 SENP2Q9HC62 589 aa5.8□□□□□ -1.48
LIMCH1-212ENST00000511424 HMX1Q9NP08 348 aaPredicted RBP5.8□□□□□ -1.48
LIMCH1-212ENST00000511424 NR5A1Q13285 461 aa5.79□□□□□ -1.48
LIMCH1-212ENST00000511424 SH3BP5LQ7L8J4 393 aa5.79□□□□□ -1.48
LIMCH1-212ENST00000511424 SH3RF1Q7Z6J0 888 aa5.79□□□□□ -1.48
LIMCH1-212ENST00000511424 MPNDQ8N594 471 aa5.79□□□□□ -1.48
LIMCH1-212ENST00000511424 ZC3H4Q9UPT8 1303 aaKnown RBP5.78□□□□□ -1.48
LIMCH1-212ENST00000511424 UPP2O95045 317 aa5.78□□□□□ -1.48
LIMCH1-212ENST00000511424 ZIC2O95409 532 aaPredicted RBP5.78□□□□□ -1.48
LIMCH1-212ENST00000511424 RAB15P59190 212 aa5.78□□□□□ -1.48
LIMCH1-212ENST00000511424 SCARF1Q14162 830 aa5.78□□□□□ -1.48
LIMCH1-212ENST00000511424 ERFEQ4G0M1 354 aa5.78□□□□□ -1.48
LIMCH1-212ENST00000511424 CDK15Q96Q40 435 aa5.78□□□□□ -1.48
LIMCH1-212ENST00000511424 APBB1O00213 710 aa5.77□□□□□ -1.49
LIMCH1-212ENST00000511424 DZIP3Q86Y13 1208 aaKnown RBP5.77□□□□□ -1.49
LIMCH1-212ENST00000511424 KIFC2Q96AC6 838 aa5.77□□□□□ -1.49
LIMCH1-212ENST00000511424 NR3C2P08235 984 aa5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 GRM5P41594 1212 aa5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 CCDC116Q8IYX3 515 aa5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 ADAM32Q8TC27 787 aa5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 ZNF775Q96BV0 537 aaPredicted RBP5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 ITPKCQ96DU7 683 aa5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 C1QTNF2Q9BXJ5 285 aa5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 ZFAND3Q9H8U3 227 aa5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 CDV3Q9UKY7 258 aaKnown RBP5.76□□□□□ -1.49
LIMCH1-212ENST00000511424 TIMP2P16035 220 aa5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 NBPF20Q3BBV1 942 aa5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 C6orf118Q5T5N4 469 aa5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 TRMT44Q8IYL2 757 aaKnown RBP5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 PURBQ96QR8 312 aaKnown RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms