RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 ZKSCAN2Q63HK3 967 aa22.97■■□□□ 1.27
CCHCR1-228ENST00000509552 NLRP1Q9C000 1473 aa22.97■■□□□ 1.27
CCHCR1-228ENST00000509552 ARHGEF40Q8TER5 1519 aa22.96■■□□□ 1.27
CCHCR1-228ENST00000509552 DIAPH1O60610 1272 aaKnown RBP22.96■■□□□ 1.27
CCHCR1-228ENST00000509552 RWDD1Q9H446 243 aaPredicted RBP22.96■■□□□ 1.27
CCHCR1-228ENST00000509552 CABP1Q9NZU7 370 aa22.96■■□□□ 1.27
CCHCR1-228ENST00000509552 TNNQ9UQP3 1299 aa22.96■■□□□ 1.27
CCHCR1-228ENST00000509552 PCDHB15Q9Y5E8 787 aa22.96■■□□□ 1.27
CCHCR1-228ENST00000509552 FTSJ3Q8IY81 847 aaKnown RBP22.95■■□□□ 1.26
CCHCR1-228ENST00000509552 IL16Q14005 1332 aa22.95■■□□□ 1.26
CCHCR1-228ENST00000509552 MVPQ14764 893 aaKnown RBP22.94■■□□□ 1.26
CCHCR1-228ENST00000509552 TSR2Q969E8 191 aaKnown RBP22.94■■□□□ 1.26
CCHCR1-228ENST00000509552 VIRMAQ69YN4 1812 aaKnown RBP22.94■■□□□ 1.26
CCHCR1-228ENST00000509552 SLC4A3P48751 1232 aa22.94■■□□□ 1.26
CCHCR1-228ENST00000509552 TRIM35Q9UPQ4 493 aa22.94■■□□□ 1.26
CCHCR1-228ENST00000509552 REREQ9P2R6 1566 aa22.94■■□□□ 1.26
CCHCR1-228ENST00000509552 AGLP35573 1532 aa22.93■■□□□ 1.26
CCHCR1-228ENST00000509552 DZIP1LQ8IYY4 767 aaKnown RBP22.93■■□□□ 1.26
CCHCR1-228ENST00000509552 EXOSC9Q06265 439 aaKnown RBP22.93■■□□□ 1.26
CCHCR1-228ENST00000509552 PNPLA6Q8IY17 1366 aa22.92■■□□□ 1.26
CCHCR1-228ENST00000509552 SMC4Q9NTJ3 1288 aa22.92■■□□□ 1.26
CCHCR1-228ENST00000509552 DLC1Q96QB1 1528 aa22.92■■□□□ 1.26
CCHCR1-228ENST00000509552 RIPK4P57078 832 aa22.91■■□□□ 1.26
CCHCR1-228ENST00000509552 ZMYM3Q14202 1370 aa22.91■■□□□ 1.26
CCHCR1-228ENST00000509552 KIF20BQ96Q89 1820 aa22.91■■□□□ 1.26
CCHCR1-228ENST00000509552 DIP2BQ9P265 1576 aa22.9■■□□□ 1.26
CCHCR1-228ENST00000509552 A2ML1A8K2U0 1454 aa22.9■■□□□ 1.26
CCHCR1-228ENST00000509552 RIMS2Q9UQ26 1411 aa22.89■■□□□ 1.25
CCHCR1-228ENST00000509552 FCHSD2O94868 740 aa22.88■■□□□ 1.25
CCHCR1-228ENST00000509552 PDZRN3Q9UPQ7 1066 aa22.88■■□□□ 1.25
CCHCR1-228ENST00000509552 ATP7BP35670 1465 aa22.88■■□□□ 1.25
CCHCR1-228ENST00000509552 SPATA31D1Q6ZQQ2 1576 aa22.87■■□□□ 1.25
CCHCR1-228ENST00000509552 WAPLQ7Z5K2 1190 aa22.87■■□□□ 1.25
CCHCR1-228ENST00000509552 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.86■■□□□ 1.25
CCHCR1-228ENST00000509552 SSH1Q8WYL5 1049 aa22.86■■□□□ 1.25
CCHCR1-228ENST00000509552 TSPOAP1O95153 1857 aa22.86■■□□□ 1.25
CCHCR1-228ENST00000509552 DDX19BQ9UMR2 479 aa22.85■■□□□ 1.25
CCHCR1-228ENST00000509552 USP19O94966 1318 aa22.84■■□□□ 1.25
CCHCR1-228ENST00000509552 TRIM27P14373 513 aa22.84■■□□□ 1.25
CCHCR1-228ENST00000509552 NFKBIBQ15653 356 aa22.84■■□□□ 1.25
CCHCR1-228ENST00000509552 ATF7IPQ6VMQ6 1270 aa22.84■■□□□ 1.25
CCHCR1-228ENST00000509552 UPF2Q9HAU5 1272 aaKnown RBP22.83■■□□□ 1.25
CCHCR1-228ENST00000509552 CDC42BPGQ6DT37 1551 aa22.83■■□□□ 1.25
CCHCR1-228ENST00000509552 POLKQ9UBT6 870 aa22.82■■□□□ 1.24
CCHCR1-228ENST00000509552 IPO8O15397 1037 aaKnown RBP22.82■■□□□ 1.24
CCHCR1-228ENST00000509552 SEC24BO95487 1268 aa22.82■■□□□ 1.24
CCHCR1-228ENST00000509552 ITPRIPQ8IWB1 547 aa22.82■■□□□ 1.24
CCHCR1-228ENST00000509552 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.82■■□□□ 1.24
CCHCR1-228ENST00000509552 KIF16BQ96L93 1317 aa22.82■■□□□ 1.24
CCHCR1-228ENST00000509552 MLECQ14165 292 aa22.81■■□□□ 1.24
CCHCR1-228ENST00000509552 NOB1Q9ULX3 412 aaKnown RBP22.81■■□□□ 1.24
CCHCR1-228ENST00000509552 PRKAR2BP31323 418 aa22.8■■□□□ 1.24
CCHCR1-228ENST00000509552 BECN1Q14457 450 aa22.8■■□□□ 1.24
CCHCR1-228ENST00000509552 SETD1AO15047 1707 aaKnown RBP22.8■■□□□ 1.24
CCHCR1-228ENST00000509552 RSPH6AQ9H0K4 717 aa22.8■■□□□ 1.24
CCHCR1-228ENST00000509552 LRRC7Q96NW7 1537 aa22.8■■□□□ 1.24
CCHCR1-228ENST00000509552 RIMBP3CA6NJZ7 1639 aa22.8■■□□□ 1.24
CCHCR1-228ENST00000509552 RIMBP3BA6NNM3 1639 aa22.8■■□□□ 1.24
CCHCR1-228ENST00000509552 RIMBP3Q9UFD9 1639 aa22.8■■□□□ 1.24
CCHCR1-228ENST00000509552 FAM135BQ49AJ0 1406 aa22.79■■□□□ 1.24
CCHCR1-228ENST00000509552 WASLO00401 505 aaPredicted RBP22.79■■□□□ 1.24
CCHCR1-228ENST00000509552 HDAC1Q13547 482 aaPredicted RBP22.79■■□□□ 1.24
CCHCR1-228ENST00000509552 ALDH1L2Q3SY69 923 aa22.79■■□□□ 1.24
CCHCR1-228ENST00000509552 EDC4Q6P2E9 1401 aaKnown RBP22.78■■□□□ 1.24
CCHCR1-228ENST00000509552 ESF1Q9H501 851 aaKnown RBP22.77■■□□□ 1.24
CCHCR1-228ENST00000509552 PPIP5K1Q6PFW1 1433 aa22.77■■□□□ 1.24
CCHCR1-228ENST00000509552 CALD1Q05682 793 aaKnown RBP22.76■■□□□ 1.23
CCHCR1-228ENST00000509552 ZNF428Q96B54 188 aa22.76■■□□□ 1.23
CCHCR1-228ENST00000509552 CPSF1Q10570 1443 aaKnown RBP22.76■■□□□ 1.23
CCHCR1-228ENST00000509552 FBLN1P23142 703 aa22.75■■□□□ 1.23
CCHCR1-228ENST00000509552 HDGFP51858 240 aaKnown RBP22.75■■□□□ 1.23
CCHCR1-228ENST00000509552 NFE2L2Q16236 605 aa22.75■■□□□ 1.23
CCHCR1-228ENST00000509552 TMEM57Q8N5G2 664 aa22.75■■□□□ 1.23
CCHCR1-228ENST00000509552 MAP2P11137 1827 aaKnown RBP22.74■■□□□ 1.23
CCHCR1-228ENST00000509552 HMOX1P09601 288 aa22.73■■□□□ 1.23
CCHCR1-228ENST00000509552 METP08581 1390 aa22.73■■□□□ 1.23
CCHCR1-228ENST00000509552 TXNDC2Q86VQ3 553 aa22.72■■□□□ 1.23
CCHCR1-228ENST00000509552 TBC1D32Q96NH3 1257 aa22.72■■□□□ 1.23
CCHCR1-228ENST00000509552 EMILIN1Q9Y6C2 1016 aa22.72■■□□□ 1.23
CCHCR1-228ENST00000509552 NRXN3Q9Y4C0 1643 aa22.72■■□□□ 1.23
CCHCR1-228ENST00000509552 NME9Q86XW9 330 aa22.71■■□□□ 1.23
CCHCR1-228ENST00000509552 NUDT16Q96DE0 195 aaKnown RBP22.71■■□□□ 1.23
CCHCR1-228ENST00000509552 SIRT1Q96EB6 747 aa22.71■■□□□ 1.23
CCHCR1-228ENST00000509552 ZBTB40Q9NUA8 1239 aa22.71■■□□□ 1.23
CCHCR1-228ENST00000509552 AATKQ6ZMQ8 1374 aa22.71■■□□□ 1.23
CCHCR1-228ENST00000509552 IL13P35225 146 aa22.7■■□□□ 1.22
CCHCR1-228ENST00000509552 BRPF1P55201 1214 aaPredicted RBP22.7■■□□□ 1.22
CCHCR1-228ENST00000509552 GSE1Q14687 1217 aa22.7■■□□□ 1.22
CCHCR1-228ENST00000509552 COG3Q96JB2 828 aa22.7■■□□□ 1.22
CCHCR1-228ENST00000509552 PHACTR3Q96KR7 559 aa22.7■■□□□ 1.22
CCHCR1-228ENST00000509552 CDK12Q9NYV4 1490 aaPredicted RBP22.7■■□□□ 1.22
CCHCR1-228ENST00000509552 CCDC61Q9Y6R9 512 aa22.7■■□□□ 1.22
CCHCR1-228ENST00000509552 SMC5Q8IY18 1101 aa22.69■■□□□ 1.22
CCHCR1-228ENST00000509552 GNAI1P63096 354 aa22.69■■□□□ 1.22
CCHCR1-228ENST00000509552 CHMP4BQ9H444 224 aaKnown RBP22.68■■□□□ 1.22
CCHCR1-228ENST00000509552 IFT57Q9NWB7 429 aa22.68■■□□□ 1.22
CCHCR1-228ENST00000509552 LMOD3Q0VAK6 560 aa22.67■■□□□ 1.22
CCHCR1-228ENST00000509552 TECPR2O15040 1411 aa22.66■■□□□ 1.22
CCHCR1-228ENST00000509552 KNDC1Q76NI1 1749 aa22.66■■□□□ 1.22
CCHCR1-228ENST00000509552 FRAT2O75474 233 aaPredicted RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms