RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 ARHGEF10O15013 1369 aa15.89■□□□□ 0.13
LIMCH1-210ENST00000509454 MED1Q15648 1581 aaPredicted RBP15.89■□□□□ 0.13
LIMCH1-210ENST00000509454 ZEB1P37275 1124 aaPredicted RBP15.89■□□□□ 0.13
LIMCH1-210ENST00000509454 NUTM2GQ5VZR2 741 aa15.89■□□□□ 0.13
LIMCH1-210ENST00000509454 TERF2IPQ9NYB0 399 aa15.89■□□□□ 0.13
LIMCH1-210ENST00000509454 KTN1Q86UP2 1357 aaKnown RBP15.88■□□□□ 0.13
LIMCH1-210ENST00000509454 ADAMTS2O95450 1211 aa15.88■□□□□ 0.13
LIMCH1-210ENST00000509454 ZNF692Q9BU19 519 aaPredicted RBP15.88■□□□□ 0.13
LIMCH1-210ENST00000509454 TRPM3Q9HCF6 1732 aaPredicted RBP15.88■□□□□ 0.13
LIMCH1-210ENST00000509454 ABTB2Q8N961 1025 aa15.87■□□□□ 0.13
LIMCH1-210ENST00000509454 NINLQ9Y2I6 1382 aa15.86■□□□□ 0.13
LIMCH1-210ENST00000509454 CABLES1Q8TDN4 633 aa15.86■□□□□ 0.13
LIMCH1-210ENST00000509454 USP6P35125 1406 aa15.86■□□□□ 0.13
LIMCH1-210ENST00000509454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.85■□□□□ 0.13
LIMCH1-210ENST00000509454 LRP6O75581 1613 aa15.85■□□□□ 0.13
LIMCH1-210ENST00000509454 AKAP12Q02952 1782 aa15.85■□□□□ 0.13
LIMCH1-210ENST00000509454 COL22A1Q8NFW1 1626 aaPredicted RBP15.84■□□□□ 0.13
LIMCH1-210ENST00000509454 C8orf37Q96NL8 207 aa15.84■□□□□ 0.13
LIMCH1-210ENST00000509454 ALS2Q96Q42 1657 aa15.83■□□□□ 0.13
LIMCH1-210ENST00000509454 A0A1W2PP64 1363 aa15.83■□□□□ 0.12
LIMCH1-210ENST00000509454 TTC21BQ7Z4L5 1316 aa15.82■□□□□ 0.12
LIMCH1-210ENST00000509454 BRD4O60885 1362 aaPredicted RBP15.82■□□□□ 0.12
LIMCH1-210ENST00000509454 CPSF1Q10570 1443 aaKnown RBP15.82■□□□□ 0.12
LIMCH1-210ENST00000509454 NLRP6P59044 892 aa15.82■□□□□ 0.12
LIMCH1-210ENST00000509454 NGLY1Q96IV0 654 aa15.81■□□□□ 0.12
LIMCH1-210ENST00000509454 CD163L1Q9NR16 1453 aa15.81■□□□□ 0.12
LIMCH1-210ENST00000509454 NLRP13Q86W25 1043 aa15.8■□□□□ 0.12
LIMCH1-210ENST00000509454 MON2Q7Z3U7 1717 aa15.8■□□□□ 0.12
LIMCH1-210ENST00000509454 TTC21AQ8NDW8 1320 aa15.8■□□□□ 0.12
LIMCH1-210ENST00000509454 ANKRD36BQ8N2N9 1353 aa15.8■□□□□ 0.12
LIMCH1-210ENST00000509454 C11orf95C9JLR9 678 aaPredicted RBP15.79■□□□□ 0.12
LIMCH1-210ENST00000509454 ZBTB7CA1YPR0 619 aa15.78■□□□□ 0.12
LIMCH1-210ENST00000509454 SOX12O15370 315 aa15.78■□□□□ 0.12
LIMCH1-210ENST00000509454 EDC4Q6P2E9 1401 aaKnown RBP15.78■□□□□ 0.12
LIMCH1-210ENST00000509454 MYOM1P52179 1685 aa15.78■□□□□ 0.12
LIMCH1-210ENST00000509454 KIF7Q2M1P5 1343 aa15.78■□□□□ 0.12
LIMCH1-210ENST00000509454 NME9Q86XW9 330 aa15.78■□□□□ 0.12
LIMCH1-210ENST00000509454 ABCA3Q99758 1704 aa15.77■□□□□ 0.12
LIMCH1-210ENST00000509454 NRKQ7Z2Y5 1582 aa15.77■□□□□ 0.12
LIMCH1-210ENST00000509454 SSH2Q76I76 1423 aa15.77■□□□□ 0.11
LIMCH1-210ENST00000509454 AFF2P51816 1311 aa15.77■□□□□ 0.11
LIMCH1-210ENST00000509454 PIK3C2AO00443 1686 aa15.76■□□□□ 0.11
LIMCH1-210ENST00000509454 ZC3H6P61129 1189 aaKnown RBP15.76■□□□□ 0.11
LIMCH1-210ENST00000509454 ZRANB1Q9UGI0 708 aa15.76■□□□□ 0.11
LIMCH1-210ENST00000509454 PRDM11Q9NQV5 511 aa15.75■□□□□ 0.11
LIMCH1-210ENST00000509454 MARF1Q9Y4F3 1742 aaKnown RBP15.75■□□□□ 0.11
LIMCH1-210ENST00000509454 ZNF772Q68DY9 489 aaPredicted RBP15.74■□□□□ 0.11
LIMCH1-210ENST00000509454 PANK3Q9H999 370 aa15.74■□□□□ 0.11
LIMCH1-210ENST00000509454 NSD3Q9BZ95 1437 aa15.74■□□□□ 0.11
LIMCH1-210ENST00000509454 PHRF1Q9P1Y6 1649 aaKnown RBP15.74■□□□□ 0.11
LIMCH1-210ENST00000509454 CCDC7Q96M83 1385 aa15.73■□□□□ 0.11
LIMCH1-210ENST00000509454 USP19O94966 1318 aa15.73■□□□□ 0.11
LIMCH1-210ENST00000509454 GCP02774 474 aa15.73■□□□□ 0.11
LIMCH1-210ENST00000509454 CHRNA2Q15822 529 aa15.73■□□□□ 0.11
LIMCH1-210ENST00000509454 COG3Q96JB2 828 aa15.73■□□□□ 0.11
LIMCH1-210ENST00000509454 USP21Q9UK80 565 aa15.73■□□□□ 0.11
LIMCH1-210ENST00000509454 KIAA0232Q92628 1395 aa15.72■□□□□ 0.11
LIMCH1-210ENST00000509454 CRYBG1Q9Y4K1 1723 aa15.72■□□□□ 0.11
LIMCH1-210ENST00000509454 FAM83GA6ND36 823 aa15.72■□□□□ 0.11
LIMCH1-210ENST00000509454 CARD14Q9BXL6 1004 aa15.72■□□□□ 0.11
LIMCH1-210ENST00000509454 KCNH5Q8NCM2 988 aa15.71■□□□□ 0.11
LIMCH1-210ENST00000509454 GGNBP2Q9H3C7 697 aa15.71■□□□□ 0.11
LIMCH1-210ENST00000509454 RGS17Q9UGC6 210 aaPredicted RBP15.71■□□□□ 0.11
LIMCH1-210ENST00000509454 WASHC2AQ641Q2 1341 aa15.7■□□□□ 0.1
LIMCH1-210ENST00000509454 CGNL1Q0VF96 1302 aa15.7■□□□□ 0.1
LIMCH1-210ENST00000509454 CCDC9Q9Y3X0 531 aaKnown RBP15.69■□□□□ 0.1
LIMCH1-210ENST00000509454 USP31Q70CQ4 1352 aa15.69■□□□□ 0.1
LIMCH1-210ENST00000509454 SLIT3O75094 1523 aa15.69■□□□□ 0.1
LIMCH1-210ENST00000509454 POTEAQ6S8J7 498 aa15.68■□□□□ 0.1
LIMCH1-210ENST00000509454 QTRT2Q9H974 415 aaKnown RBP15.68■□□□□ 0.1
LIMCH1-210ENST00000509454 BTG4Q9NY30 223 aa15.68■□□□□ 0.1
LIMCH1-210ENST00000509454 KNSTRNQ9Y448 316 aa15.68■□□□□ 0.1
LIMCH1-210ENST00000509454 KIF20BQ96Q89 1820 aa15.68■□□□□ 0.1
LIMCH1-210ENST00000509454 FYB1O15117 783 aa15.68■□□□□ 0.1
LIMCH1-210ENST00000509454 UNC5CLQ8IV45 518 aa15.68■□□□□ 0.1
LIMCH1-210ENST00000509454 FNBP4Q8N3X1 1017 aaPredicted RBP15.68■□□□□ 0.1
LIMCH1-210ENST00000509454 PLCH1Q4KWH8 1693 aa15.67■□□□□ 0.1
LIMCH1-210ENST00000509454 COL14A1Q05707 1796 aaKnown RBP15.67■□□□□ 0.1
LIMCH1-210ENST00000509454 EVA1CP58658 441 aa15.67■□□□□ 0.1
LIMCH1-210ENST00000509454 STRN4Q9NRL3 753 aa15.67■□□□□ 0.1
LIMCH1-210ENST00000509454 TRPC5Q9UL62 973 aaPredicted RBP15.67■□□□□ 0.1
LIMCH1-210ENST00000509454 CNGB1Q14028 1251 aaPredicted RBP15.66■□□□□ 0.1
LIMCH1-210ENST00000509454 OVOS2A0A0J9YW53 1432 aa15.66■□□□□ 0.1
LIMCH1-210ENST00000509454 OVOS2Q6IE36 1432 aa15.66■□□□□ 0.1
LIMCH1-210ENST00000509454 CPDO75976 1380 aa15.65■□□□□ 0.1
LIMCH1-210ENST00000509454 SLIT2O94813 1529 aa15.65■□□□□ 0.1
LIMCH1-210ENST00000509454 RXRBP28702 533 aa15.64■□□□□ 0.09
LIMCH1-210ENST00000509454 BCL9LQ86UU0 1499 aa15.64■□□□□ 0.09
LIMCH1-210ENST00000509454 USP54Q70EL1 1684 aa15.64■□□□□ 0.09
LIMCH1-210ENST00000509454 TNNT2P45379 298 aaPredicted RBP15.63■□□□□ 0.09
LIMCH1-210ENST00000509454 NWD2Q9ULI1 1742 aa15.63■□□□□ 0.09
LIMCH1-210ENST00000509454 NFAT5O94916 1531 aa15.63■□□□□ 0.09
LIMCH1-210ENST00000509454 ARHGEF25Q86VW2 580 aa15.63■□□□□ 0.09
LIMCH1-210ENST00000509454 CSB-PGBD3P0DP91 1061 aa15.62■□□□□ 0.09
LIMCH1-210ENST00000509454 FBLN1P23142 703 aa15.62■□□□□ 0.09
LIMCH1-210ENST00000509454 ATRNO75882 1429 aa15.61■□□□□ 0.09
LIMCH1-210ENST00000509454 AMPHP49418 695 aa15.61■□□□□ 0.09
LIMCH1-210ENST00000509454 RBM6P78332 1123 aaKnown RBP15.61■□□□□ 0.09
LIMCH1-210ENST00000509454 AATKQ6ZMQ8 1374 aa15.61■□□□□ 0.09
LIMCH1-210ENST00000509454 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms