RNA–Protein interactions for RNA: ENST00000508063.1

PTPN13-207, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 3

Gene PTPN13, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-207ENST00000508063 ATP7BP35670 1465 aa15.96■□□□□ 0.14
PTPN13-207ENST00000508063 ALS2Q96Q42 1657 aa15.95■□□□□ 0.14
PTPN13-207ENST00000508063 NBPF1Q3BBV0 1214 aa15.95■□□□□ 0.14
PTPN13-207ENST00000508063 CCDC61Q9Y6R9 512 aa15.95■□□□□ 0.14
PTPN13-207ENST00000508063 PLCH1Q4KWH8 1693 aa15.95■□□□□ 0.14
PTPN13-207ENST00000508063 VPS72Q15906 364 aa15.94■□□□□ 0.14
PTPN13-207ENST00000508063 RALGAPBQ86X10 1494 aa15.94■□□□□ 0.14
PTPN13-207ENST00000508063 CENPJQ9HC77 1338 aaPredicted RBP15.94■□□□□ 0.14
PTPN13-207ENST00000508063 L3MBTL2Q969R5 705 aa15.93■□□□□ 0.14
PTPN13-207ENST00000508063 CCDC9Q9Y3X0 531 aaKnown RBP15.93■□□□□ 0.14
PTPN13-207ENST00000508063 FAM83GA6ND36 823 aa15.92■□□□□ 0.14
PTPN13-207ENST00000508063 CCDC125Q86Z20 511 aa15.92■□□□□ 0.14
PTPN13-207ENST00000508063 GLI3P10071 1580 aa15.92■□□□□ 0.14
PTPN13-207ENST00000508063 PLEKHG3A1L390 1219 aa15.91■□□□□ 0.14
PTPN13-207ENST00000508063 SRPK2P78362 688 aaKnown RBP15.91■□□□□ 0.14
PTPN13-207ENST00000508063 NEUROD1Q13562 356 aa15.91■□□□□ 0.14
PTPN13-207ENST00000508063 COL14A1Q05707 1796 aaKnown RBP15.9■□□□□ 0.14
PTPN13-207ENST00000508063 POLR3AO14802 1390 aaPredicted RBP15.9■□□□□ 0.14
PTPN13-207ENST00000508063 TOPAZ1Q8N9V7 1692 aa15.9■□□□□ 0.14
PTPN13-207ENST00000508063 SIN3AQ96ST3 1273 aa15.9■□□□□ 0.14
PTPN13-207ENST00000508063 ACEP12821 1306 aa15.9■□□□□ 0.14
PTPN13-207ENST00000508063 NBPF8Q3BBV2 869 aa15.89■□□□□ 0.13
PTPN13-207ENST00000508063 BTG4Q9NY30 223 aa15.89■□□□□ 0.13
PTPN13-207ENST00000508063 QRICH2Q9H0J4 1663 aa15.88■□□□□ 0.13
PTPN13-207ENST00000508063 TRPM1Q7Z4N2 1603 aa15.87■□□□□ 0.13
PTPN13-207ENST00000508063 ONECUT3O60422 494 aaPredicted RBP15.87■□□□□ 0.13
PTPN13-207ENST00000508063 SEPT12Q8IYM1 358 aa15.87■□□□□ 0.13
PTPN13-207ENST00000508063 PRDM11Q9NQV5 511 aa15.87■□□□□ 0.13
PTPN13-207ENST00000508063 CRYBG1Q9Y4K1 1723 aa15.87■□□□□ 0.13
PTPN13-207ENST00000508063 NRAPQ86VF7 1730 aa15.86■□□□□ 0.13
PTPN13-207ENST00000508063 BRD4O60885 1362 aaPredicted RBP15.86■□□□□ 0.13
PTPN13-207ENST00000508063 ROCK2O75116 1388 aaKnown RBP15.86■□□□□ 0.13
PTPN13-207ENST00000508063 PPIP5K1Q6PFW1 1433 aa15.85■□□□□ 0.13
PTPN13-207ENST00000508063 A0A0G2JS52 829 aa15.85■□□□□ 0.13
PTPN13-207ENST00000508063 MYT1Q01538 1121 aa15.85■□□□□ 0.13
PTPN13-207ENST00000508063 ABTB2Q8N961 1025 aa15.85■□□□□ 0.13
PTPN13-207ENST00000508063 CABP2Q9NPB3 220 aa15.85■□□□□ 0.13
PTPN13-207ENST00000508063 EVC2Q86UK5 1308 aa15.85■□□□□ 0.13
PTPN13-207ENST00000508063 BRWD3Q6RI45 1802 aa15.84■□□□□ 0.13
PTPN13-207ENST00000508063 PHRF1Q9P1Y6 1649 aaKnown RBP15.84■□□□□ 0.13
PTPN13-207ENST00000508063 EP400Q96L91 3159 aa15.83■□□□□ 0.12
PTPN13-207ENST00000508063 SF3B2Q13435 895 aaKnown RBP15.83■□□□□ 0.12
PTPN13-207ENST00000508063 KRT27Q7Z3Y8 459 aa15.83■□□□□ 0.12
PTPN13-207ENST00000508063 KIAA0232Q92628 1395 aa15.83■□□□□ 0.12
PTPN13-207ENST00000508063 BLMP54132 1417 aaPredicted RBP15.83■□□□□ 0.12
PTPN13-207ENST00000508063 NUTM2GQ5VZR2 741 aa15.82■□□□□ 0.12
PTPN13-207ENST00000508063 NLRP13Q86W25 1043 aa15.82■□□□□ 0.12
PTPN13-207ENST00000508063 ZC3H6P61129 1189 aaKnown RBP15.81■□□□□ 0.12
PTPN13-207ENST00000508063 FAM98CQ17RN3 349 aaKnown RBP15.81■□□□□ 0.12
PTPN13-207ENST00000508063 SPATA31A5Q5VU36 1347 aa15.81■□□□□ 0.12
PTPN13-207ENST00000508063 SPATA31A7Q8IWB4 1347 aa15.81■□□□□ 0.12
PTPN13-207ENST00000508063 CABP1Q9NZU7 370 aa15.8■□□□□ 0.12
PTPN13-207ENST00000508063 ZRANB1Q9UGI0 708 aa15.8■□□□□ 0.12
PTPN13-207ENST00000508063 EVA1CP58658 441 aa15.79■□□□□ 0.12
PTPN13-207ENST00000508063 CHRNA2Q15822 529 aa15.79■□□□□ 0.12
PTPN13-207ENST00000508063 USP6P35125 1406 aa15.78■□□□□ 0.12
PTPN13-207ENST00000508063 CPDO75976 1380 aa15.78■□□□□ 0.12
PTPN13-207ENST00000508063 TONSLQ96HA7 1378 aa15.78■□□□□ 0.12
PTPN13-207ENST00000508063 USP19O94966 1318 aa15.78■□□□□ 0.12
PTPN13-207ENST00000508063 TRIM26Q12899 539 aaPredicted RBP15.78■□□□□ 0.12
PTPN13-207ENST00000508063 ZNF692Q9BU19 519 aaPredicted RBP15.78■□□□□ 0.12
PTPN13-207ENST00000508063 STRN4Q9NRL3 753 aa15.78■□□□□ 0.12
PTPN13-207ENST00000508063 NRKQ7Z2Y5 1582 aa15.78■□□□□ 0.12
PTPN13-207ENST00000508063 SPATA31A1Q5TZJ5 1347 aa15.76■□□□□ 0.11
PTPN13-207ENST00000508063 GCP02774 474 aa15.76■□□□□ 0.11
PTPN13-207ENST00000508063 CARD11Q9BXL7 1154 aa15.76■□□□□ 0.11
PTPN13-207ENST00000508063 NLRP6P59044 892 aa15.75■□□□□ 0.11
PTPN13-207ENST00000508063 SBNO2Q9Y2G9 1366 aa15.75■□□□□ 0.11
PTPN13-207ENST00000508063 THSD7AQ9UPZ6 1657 aa15.74■□□□□ 0.11
PTPN13-207ENST00000508063 SSH2Q76I76 1423 aa15.73■□□□□ 0.11
PTPN13-207ENST00000508063 BAG6P46379 1132 aa15.72■□□□□ 0.11
PTPN13-207ENST00000508063 BARGINQ6ZT62 677 aa15.72■□□□□ 0.11
PTPN13-207ENST00000508063 DEFB132Q7Z7B7 95 aa15.72■□□□□ 0.11
PTPN13-207ENST00000508063 LMO7Q8WWI1 1683 aa15.72■□□□□ 0.11
PTPN13-207ENST00000508063 CAMTA1Q9Y6Y1 1673 aa15.72■□□□□ 0.11
PTPN13-207ENST00000508063 TTC21AQ8NDW8 1320 aa15.71■□□□□ 0.11
PTPN13-207ENST00000508063 USP35Q9P2H5 1018 aa15.71■□□□□ 0.11
PTPN13-207ENST00000508063 THRAP3Q9Y2W1 955 aaKnown RBP15.71■□□□□ 0.11
PTPN13-207ENST00000508063 SLIT3O75094 1523 aa15.71■□□□□ 0.11
PTPN13-207ENST00000508063 AKAP12Q02952 1782 aa15.71■□□□□ 0.11
PTPN13-207ENST00000508063 TCP11L2Q8N4U5 519 aa15.7■□□□□ 0.1
PTPN13-207ENST00000508063 KCNH5Q8NCM2 988 aa15.7■□□□□ 0.1
PTPN13-207ENST00000508063 RGPD1P0DJD0 1748 aa15.7■□□□□ 0.1
PTPN13-207ENST00000508063 PIK3C2AO00443 1686 aa15.7■□□□□ 0.1
PTPN13-207ENST00000508063 TTC21BQ7Z4L5 1316 aa15.69■□□□□ 0.1
PTPN13-207ENST00000508063 ZBTB7CA1YPR0 619 aa15.69■□□□□ 0.1
PTPN13-207ENST00000508063 SLC24A1O60721 1099 aa15.69■□□□□ 0.1
PTPN13-207ENST00000508063 SLC4A2P04920 1241 aa15.69■□□□□ 0.1
PTPN13-207ENST00000508063 LARP1Q6PKG0 1096 aaKnown RBP15.69■□□□□ 0.1
PTPN13-207ENST00000508063 RNF39Q9H2S5 420 aa15.69■□□□□ 0.1
PTPN13-207ENST00000508063 AATKQ6ZMQ8 1374 aa15.69■□□□□ 0.1
PTPN13-207ENST00000508063 KTN1Q86UP2 1357 aaKnown RBP15.69■□□□□ 0.1
PTPN13-207ENST00000508063 CPSF1Q10570 1443 aaKnown RBP15.68■□□□□ 0.1
PTPN13-207ENST00000508063 COL5A2P05997 1499 aaPredicted RBP15.68■□□□□ 0.1
PTPN13-207ENST00000508063 PDE3BQ13370 1112 aa15.68■□□□□ 0.1
PTPN13-207ENST00000508063 FAM196AQ6ZSG2 479 aa15.68■□□□□ 0.1
PTPN13-207ENST00000508063 FAM182BQ5T319 152 aa15.67■□□□□ 0.1
PTPN13-207ENST00000508063 CRB1P82279 1406 aa15.67■□□□□ 0.1
PTPN13-207ENST00000508063 HDGFL2Q7Z4V5 671 aaPredicted RBP15.66■□□□□ 0.1
PTPN13-207ENST00000508063 PUS7Q96PZ0 661 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms