RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 PRAM1Q96QH2 718 aa14.18□□□□□ -0.14
NUP54-203ENST00000504173 EIF3AQ14152 1382 aaKnown RBP14.18□□□□□ -0.14
NUP54-203ENST00000504173 PLEKHH1Q9ULM0 1364 aa14.18□□□□□ -0.14
NUP54-203ENST00000504173 ARHGEF28Q8N1W1 1705 aaKnown RBP14.18□□□□□ -0.14
NUP54-203ENST00000504173 UTRNP46939 3433 aa14.17□□□□□ -0.14
NUP54-203ENST00000504173 KCNQ2O43526 872 aa14.16□□□□□ -0.14
NUP54-203ENST00000504173 SAFB2Q14151 953 aaKnown RBP eCLIP14.16□□□□□ -0.14
NUP54-203ENST00000504173 CENPJQ9HC77 1338 aaPredicted RBP14.15□□□□□ -0.15
NUP54-203ENST00000504173 USP47Q96K76 1375 aa14.14□□□□□ -0.15
NUP54-203ENST00000504173 PLCH1Q4KWH8 1693 aa14.14□□□□□ -0.15
NUP54-203ENST00000504173 RREB1Q92766 1687 aa14.14□□□□□ -0.15
NUP54-203ENST00000504173 CCDC9Q9Y3X0 531 aaKnown RBP14.13□□□□□ -0.15
NUP54-203ENST00000504173 SPATA31A3Q5VYP0 1347 aa14.13□□□□□ -0.15
NUP54-203ENST00000504173 MINK1Q8N4C8 1332 aaPredicted RBP14.12□□□□□ -0.15
NUP54-203ENST00000504173 QRICH2Q9H0J4 1663 aa14.11□□□□□ -0.15
NUP54-203ENST00000504173 FOXO3O43524 673 aa14.11□□□□□ -0.15
NUP54-203ENST00000504173 ESCO1Q5FWF5 840 aa14.11□□□□□ -0.15
NUP54-203ENST00000504173 CDC42BPGQ6DT37 1551 aa14.11□□□□□ -0.15
NUP54-203ENST00000504173 NUP188Q5SRE5 1749 aa14.1□□□□□ -0.15
NUP54-203ENST00000504173 A0A0G2JS52 829 aa14.1□□□□□ -0.15
NUP54-203ENST00000504173 MYT1Q01538 1121 aa14.1□□□□□ -0.15
NUP54-203ENST00000504173 XPCQ01831 940 aaPredicted RBP14.1□□□□□ -0.15
NUP54-203ENST00000504173 FAM98CQ17RN3 349 aaKnown RBP14.1□□□□□ -0.15
NUP54-203ENST00000504173 NBPF14Q5TI25 921 aa14.1□□□□□ -0.15
NUP54-203ENST00000504173 HIRIP3Q9BW71 556 aaPredicted RBP14.1□□□□□ -0.15
NUP54-203ENST00000504173 ST20-MTHFSA0A0A6YYL1 179 aa14.09□□□□□ -0.15
NUP54-203ENST00000504173 EIF4G2P78344 907 aaKnown RBP eCLIP14.09□□□□□ -0.15
NUP54-203ENST00000504173 FAM182BQ5T319 152 aa14.09□□□□□ -0.15
NUP54-203ENST00000504173 THSD7AQ9UPZ6 1657 aa14.08□□□□□ -0.16
NUP54-203ENST00000504173 CHD4Q14839 1912 aa14.08□□□□□ -0.16
NUP54-203ENST00000504173 GIGYF1O75420 1035 aaPredicted RBP14.08□□□□□ -0.16
NUP54-203ENST00000504173 SBNO2Q9Y2G9 1366 aa14.07□□□□□ -0.16
NUP54-203ENST00000504173 NRAPQ86VF7 1730 aa14.07□□□□□ -0.16
NUP54-203ENST00000504173 WASLO00401 505 aaPredicted RBP14.06□□□□□ -0.16
NUP54-203ENST00000504173 HSPA5P11021 654 aaKnown RBP14.06□□□□□ -0.16
NUP54-203ENST00000504173 FAM196AQ6ZSG2 479 aa14.06□□□□□ -0.16
NUP54-203ENST00000504173 TRIM37O94972 964 aa14.05□□□□□ -0.16
NUP54-203ENST00000504173 APBA3O96018 575 aa14.05□□□□□ -0.16
NUP54-203ENST00000504173 FMN2Q9NZ56 1722 aa14.04□□□□□ -0.16
NUP54-203ENST00000504173 NUTM2FA1L443 756 aa14.04□□□□□ -0.16
NUP54-203ENST00000504173 TESK2Q96S53 571 aa14.04□□□□□ -0.16
NUP54-203ENST00000504173 EVC2Q86UK5 1308 aa14.04□□□□□ -0.16
NUP54-203ENST00000504173 TNS3Q68CZ2 1445 aa14.04□□□□□ -0.16
NUP54-203ENST00000504173 TULP4Q9NRJ4 1543 aa14.04□□□□□ -0.16
NUP54-203ENST00000504173 NRKQ7Z2Y5 1582 aa14.04□□□□□ -0.16
NUP54-203ENST00000504173 FAM83GA6ND36 823 aa14.03□□□□□ -0.16
NUP54-203ENST00000504173 SLC24A1O60721 1099 aa14.03□□□□□ -0.16
NUP54-203ENST00000504173 CDK19Q9BWU1 502 aa14.03□□□□□ -0.16
NUP54-203ENST00000504173 ABCA3Q99758 1704 aa14.02□□□□□ -0.16
NUP54-203ENST00000504173 SPATA31A5Q5VU36 1347 aa14.02□□□□□ -0.17
NUP54-203ENST00000504173 SPATA31A7Q8IWB4 1347 aa14.02□□□□□ -0.17
NUP54-203ENST00000504173 HAP1P54257 671 aaPredicted RBP14.02□□□□□ -0.17
NUP54-203ENST00000504173 SRPK2P78362 688 aaKnown RBP14.02□□□□□ -0.17
NUP54-203ENST00000504173 ANKARQ7Z5J8 1434 aa14.01□□□□□ -0.17
NUP54-203ENST00000504173 TMF1P82094 1093 aa14.01□□□□□ -0.17
NUP54-203ENST00000504173 CABP2Q9NPB3 220 aa14.01□□□□□ -0.17
NUP54-203ENST00000504173 KIF1AQ12756 1690 aa14.01□□□□□ -0.17
NUP54-203ENST00000504173 CABLES1Q8TDN4 633 aa14□□□□□ -0.17
NUP54-203ENST00000504173 CASZ1Q86V15 1759 aa14□□□□□ -0.17
NUP54-203ENST00000504173 PRR36Q9H6K5 1346 aa13.99□□□□□ -0.17
NUP54-203ENST00000504173 NUDT16Q96DE0 195 aaKnown RBP13.99□□□□□ -0.17
NUP54-203ENST00000504173 ATP7BP35670 1465 aa13.99□□□□□ -0.17
NUP54-203ENST00000504173 MYOM1P52179 1685 aa13.98□□□□□ -0.17
NUP54-203ENST00000504173 PTGER2P43116 358 aa13.98□□□□□ -0.17
NUP54-203ENST00000504173 KRT28Q7Z3Y7 464 aa13.98□□□□□ -0.17
NUP54-203ENST00000504173 SYT17Q9BSW7 474 aa13.98□□□□□ -0.17
NUP54-203ENST00000504173 BTG4Q9NY30 223 aa13.98□□□□□ -0.17
NUP54-203ENST00000504173 SBNO1A3KN83 1393 aa13.97□□□□□ -0.17
NUP54-203ENST00000504173 ARHGEF10O15013 1369 aa13.97□□□□□ -0.17
NUP54-203ENST00000504173 RGPD8O14715 1765 aaPredicted RBP13.97□□□□□ -0.17
NUP54-203ENST00000504173 CDCA8Q53HL2 280 aa13.97□□□□□ -0.17
NUP54-203ENST00000504173 ITSN1Q15811 1721 aa13.96□□□□□ -0.17
NUP54-203ENST00000504173 CCDC61Q9Y6R9 512 aa13.96□□□□□ -0.17
NUP54-203ENST00000504173 COL14A1Q05707 1796 aaKnown RBP13.96□□□□□ -0.18
NUP54-203ENST00000504173 PSME1Q06323 249 aa13.95□□□□□ -0.18
NUP54-203ENST00000504173 PUS7Q96PZ0 661 aaKnown RBP13.95□□□□□ -0.18
NUP54-203ENST00000504173 FHDC1Q9C0D6 1143 aaPredicted RBP13.95□□□□□ -0.18
NUP54-203ENST00000504173 PHF8Q9UPP1 1060 aa13.95□□□□□ -0.18
NUP54-203ENST00000504173 TOPAZ1Q8N9V7 1692 aa13.95□□□□□ -0.18
NUP54-203ENST00000504173 PPIP5K1Q6PFW1 1433 aa13.94□□□□□ -0.18
NUP54-203ENST00000504173 POLR3GLQ9BT43 218 aa13.94□□□□□ -0.18
NUP54-203ENST00000504173 PMFBP1Q8TBY8 1022 aa13.93□□□□□ -0.18
NUP54-203ENST00000504173 MAP3K5Q99683 1374 aa13.93□□□□□ -0.18
NUP54-203ENST00000504173 RGPD3A6NKT7 1758 aaPredicted RBP13.92□□□□□ -0.18
NUP54-203ENST00000504173 RGPD4Q7Z3J3 1758 aa13.92□□□□□ -0.18
NUP54-203ENST00000504173 NGDNQ8NEJ9 315 aaKnown RBP13.92□□□□□ -0.18
NUP54-203ENST00000504173 TMC1Q8TDI8 760 aa13.92□□□□□ -0.18
NUP54-203ENST00000504173 CABP1Q9NZU7 370 aa13.92□□□□□ -0.18
NUP54-203ENST00000504173 SHANK3Q9BYB0 1731 aa13.92□□□□□ -0.18
NUP54-203ENST00000504173 SPATA31A1Q5TZJ5 1347 aa13.91□□□□□ -0.18
NUP54-203ENST00000504173 PLEKHG3A1L390 1219 aa13.91□□□□□ -0.18
NUP54-203ENST00000504173 C11orf95C9JLR9 678 aaPredicted RBP13.91□□□□□ -0.18
NUP54-203ENST00000504173 SLC34A2O95436 690 aa13.91□□□□□ -0.18
NUP54-203ENST00000504173 HSPA6P17066 643 aa13.91□□□□□ -0.18
NUP54-203ENST00000504173 ANO8Q9HCE9 1232 aaPredicted RBP13.9□□□□□ -0.18
NUP54-203ENST00000504173 ACEP12821 1306 aa13.9□□□□□ -0.19
NUP54-203ENST00000504173 KIF7Q2M1P5 1343 aa13.9□□□□□ -0.19
NUP54-203ENST00000504173 ZBTB7AO95365 584 aa13.89□□□□□ -0.19
NUP54-203ENST00000504173 SGIP1Q9BQI5 828 aa13.89□□□□□ -0.19
NUP54-203ENST00000504173 PDGFDQ9GZP0 370 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms