RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 TTC21BQ7Z4L5 1316 aa10.89□□□□□ -0.67
TOPBP1-202ENST00000503338 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.89□□□□□ -0.67
TOPBP1-202ENST00000503338 GGNBP2Q9H3C7 697 aa10.89□□□□□ -0.67
TOPBP1-202ENST00000503338 WDR43Q15061 677 aaKnown RBP eCLIP10.88□□□□□ -0.67
TOPBP1-202ENST00000503338 SSH2Q76I76 1423 aa10.88□□□□□ -0.67
TOPBP1-202ENST00000503338 PMFBP1Q8TBY8 1022 aa10.88□□□□□ -0.67
TOPBP1-202ENST00000503338 ANKRD26Q9UPS8 1709 aa10.88□□□□□ -0.67
TOPBP1-202ENST00000503338 AATKQ6ZMQ8 1374 aa10.88□□□□□ -0.67
TOPBP1-202ENST00000503338 KIF20BQ96Q89 1820 aa10.87□□□□□ -0.67
TOPBP1-202ENST00000503338 ESCO1Q5FWF5 840 aa10.87□□□□□ -0.67
TOPBP1-202ENST00000503338 C1orf167Q5SNV9 1468 aa10.87□□□□□ -0.67
TOPBP1-202ENST00000503338 MTHFSP49914 203 aa10.86□□□□□ -0.67
TOPBP1-202ENST00000503338 RBM33Q96EV2 1170 aaKnown RBP10.86□□□□□ -0.67
TOPBP1-202ENST00000503338 USP31Q70CQ4 1352 aa10.86□□□□□ -0.67
TOPBP1-202ENST00000503338 NRKQ7Z2Y5 1582 aa10.86□□□□□ -0.67
TOPBP1-202ENST00000503338 ZNF335Q9H4Z2 1342 aaPredicted RBP10.85□□□□□ -0.67
TOPBP1-202ENST00000503338 LRRC7Q96NW7 1537 aa10.85□□□□□ -0.67
TOPBP1-202ENST00000503338 HNRNPUQ00839 825 aaKnown RBP eCLIP10.85□□□□□ -0.67
TOPBP1-202ENST00000503338 PSME1Q06323 249 aa10.85□□□□□ -0.67
TOPBP1-202ENST00000503338 NME9Q86XW9 330 aa10.85□□□□□ -0.67
TOPBP1-202ENST00000503338 NUDCQ9Y266 331 aa10.85□□□□□ -0.67
TOPBP1-202ENST00000503338 KIF1AQ12756 1690 aa10.85□□□□□ -0.67
TOPBP1-202ENST00000503338 STRCP1A6NGW2 1772 aa10.85□□□□□ -0.67
TOPBP1-202ENST00000503338 MST1RQ04912 1400 aa10.84□□□□□ -0.67
TOPBP1-202ENST00000503338 TNNT2P45379 298 aaPredicted RBP10.84□□□□□ -0.67
TOPBP1-202ENST00000503338 OVOS2A0A0J9YW53 1432 aa10.84□□□□□ -0.67
TOPBP1-202ENST00000503338 OVOS2Q6IE36 1432 aa10.84□□□□□ -0.67
TOPBP1-202ENST00000503338 ZBED9Q6R2W3 1325 aa10.84□□□□□ -0.67
TOPBP1-202ENST00000503338 NGEFQ8N5V2 710 aa10.83□□□□□ -0.68
TOPBP1-202ENST00000503338 RGPD8O14715 1765 aaPredicted RBP10.82□□□□□ -0.68
TOPBP1-202ENST00000503338 PNPLA6Q8IY17 1366 aa10.82□□□□□ -0.68
TOPBP1-202ENST00000503338 PIAS4Q8N2W9 510 aaPredicted RBP10.82□□□□□ -0.68
TOPBP1-202ENST00000503338 PNNQ9H307 717 aaKnown RBP10.82□□□□□ -0.68
TOPBP1-202ENST00000503338 BLMP54132 1417 aaPredicted RBP10.82□□□□□ -0.68
TOPBP1-202ENST00000503338 SMG6Q86US8 1419 aaKnown RBP10.82□□□□□ -0.68
TOPBP1-202ENST00000503338 NPHP3Q7Z494 1330 aa10.82□□□□□ -0.68
TOPBP1-202ENST00000503338 KIF24Q5T7B8 1368 aa10.81□□□□□ -0.68
TOPBP1-202ENST00000503338 ABTB2Q8N961 1025 aa10.81□□□□□ -0.68
TOPBP1-202ENST00000503338 ORAI2Q96SN7 254 aa10.81□□□□□ -0.68
TOPBP1-202ENST00000503338 POLKQ9UBT6 870 aa10.81□□□□□ -0.68
TOPBP1-202ENST00000503338 FOXO3O43524 673 aa10.8□□□□□ -0.68
TOPBP1-202ENST00000503338 PAK3O75914 559 aaPredicted RBP10.8□□□□□ -0.68
TOPBP1-202ENST00000503338 NLRP6P59044 892 aa10.8□□□□□ -0.68
TOPBP1-202ENST00000503338 KCNH5Q8NCM2 988 aa10.8□□□□□ -0.68
TOPBP1-202ENST00000503338 ADAMTS8Q9UP79 889 aa10.8□□□□□ -0.68
TOPBP1-202ENST00000503338 CDK12Q9NYV4 1490 aaPredicted RBP10.8□□□□□ -0.68
TOPBP1-202ENST00000503338 USP54Q70EL1 1684 aa10.79□□□□□ -0.68
TOPBP1-202ENST00000503338 SBNO1A3KN83 1393 aa10.79□□□□□ -0.68
TOPBP1-202ENST00000503338 DIAPH1O60610 1272 aaKnown RBP10.79□□□□□ -0.68
TOPBP1-202ENST00000503338 KRT28Q7Z3Y7 464 aa10.79□□□□□ -0.68
TOPBP1-202ENST00000503338 SLAIN2Q9P270 581 aa10.79□□□□□ -0.68
TOPBP1-202ENST00000503338 PDE3BQ13370 1112 aa10.78□□□□□ -0.68
TOPBP1-202ENST00000503338 NCBP3Q53F19 620 aaKnown RBP10.78□□□□□ -0.68
TOPBP1-202ENST00000503338 XIRP1Q702N8 1843 aaKnown RBP10.77□□□□□ -0.68
TOPBP1-202ENST00000503338 ZRANB1Q9UGI0 708 aa10.77□□□□□ -0.69
TOPBP1-202ENST00000503338 PIK3C2AO00443 1686 aa10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 COL3A1P02461 1466 aaPredicted RBP10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 PPM1GO15355 546 aaPredicted RBP10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 NEFMP07197 916 aa10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 U2AF1L5P0DN76 240 aaPredicted RBP10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 U2AF1Q01081 240 aaKnown RBP eCLIP10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 BRINP3Q76B58 766 aa10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 RUNDC1Q96C34 613 aa10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 RTL1A6NKG5 1358 aa10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 ARHGEF10O15013 1369 aa10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 FLT4P35916 1363 aa10.76□□□□□ -0.69
TOPBP1-202ENST00000503338 MAP2P11137 1827 aaKnown RBP10.75□□□□□ -0.69
TOPBP1-202ENST00000503338 FCHSD2O94868 740 aa10.75□□□□□ -0.69
TOPBP1-202ENST00000503338 AMPHP49418 695 aa10.75□□□□□ -0.69
TOPBP1-202ENST00000503338 RRS1Q15050 365 aaKnown RBP10.75□□□□□ -0.69
TOPBP1-202ENST00000503338 EMILIN1Q9Y6C2 1016 aa10.75□□□□□ -0.69
TOPBP1-202ENST00000503338 LTBP4Q8N2S1 1624 aa10.74□□□□□ -0.69
TOPBP1-202ENST00000503338 U2SURPO15042 1029 aaKnown RBP10.74□□□□□ -0.69
TOPBP1-202ENST00000503338 USP19O94966 1318 aa10.74□□□□□ -0.69
TOPBP1-202ENST00000503338 MAP3K19Q56UN5 1328 aa10.74□□□□□ -0.69
TOPBP1-202ENST00000503338 SHPRHQ149N8 1683 aa10.73□□□□□ -0.69
TOPBP1-202ENST00000503338 TRPM3Q9HCF6 1732 aaPredicted RBP10.73□□□□□ -0.69
TOPBP1-202ENST00000503338 IL13P35225 146 aa10.73□□□□□ -0.69
TOPBP1-202ENST00000503338 TNS3Q68CZ2 1445 aa10.73□□□□□ -0.69
TOPBP1-202ENST00000503338 GCP02774 474 aa10.72□□□□□ -0.69
TOPBP1-202ENST00000503338 LMOD2Q6P5Q4 547 aa10.72□□□□□ -0.69
TOPBP1-202ENST00000503338 SOS2Q07890 1332 aaPredicted RBP10.72□□□□□ -0.69
TOPBP1-202ENST00000503338 SPATA31A3Q5VYP0 1347 aa10.72□□□□□ -0.69
TOPBP1-202ENST00000503338 MAPK8IP3Q9UPT6 1336 aa10.72□□□□□ -0.69
TOPBP1-202ENST00000503338 PXDNQ92626 1479 aa10.72□□□□□ -0.69
TOPBP1-202ENST00000503338 SLIT3O75094 1523 aa10.72□□□□□ -0.69
TOPBP1-202ENST00000503338 FBLN1P23142 703 aa10.71□□□□□ -0.69
TOPBP1-202ENST00000503338 XPCQ01831 940 aaPredicted RBP10.71□□□□□ -0.69
TOPBP1-202ENST00000503338 CCDC27Q2M243 656 aa10.71□□□□□ -0.69
TOPBP1-202ENST00000503338 NUTM2GQ5VZR2 741 aa10.71□□□□□ -0.69
TOPBP1-202ENST00000503338 ALS2Q96Q42 1657 aa10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 IQSEC2Q5JU85 1478 aa10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 APAF1O14727 1248 aa10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 SOX12O15370 315 aa10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 TOM1O60784 492 aa10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 HOXC9P31274 260 aa10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 EIF4A2Q14240 407 aaKnown RBP10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 CCDC146Q8IYE0 955 aa10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 IP6K1Q92551 441 aa10.7□□□□□ -0.7
TOPBP1-202ENST00000503338 NFAT5O94916 1531 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms