RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 WDR63Q8IWG1 891 aa20.76■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 COG6Q9Y2V7 657 aa20.76■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 CLUAP1Q96AJ1 413 aa20.76■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 RBM33Q96EV2 1170 aaKnown RBP20.76■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 CCDC27Q2M243 656 aa20.75■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 ANKLE2Q86XL3 938 aa20.75■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 NRXN3Q9Y4C0 1643 aa20.75■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 SLIT1O75093 1534 aa20.74■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 NSD2O96028 1365 aa20.74■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 SLC4A3P48751 1232 aa20.74■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 ARHGAP23Q9P227 1491 aa20.73■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 METP08581 1390 aa20.73■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 CFAP53Q96M91 514 aa20.73■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 AEBP2Q6ZN18 517 aaPredicted RBP20.72■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 CABP2Q9NPB3 220 aa20.72■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 ALKQ9UM73 1620 aa20.72■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 ADGRB2O60241 1585 aa20.72■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 CANXP27824 592 aaKnown RBP20.72■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 NCBP3Q53F19 620 aaKnown RBP20.72■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.71■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 FRAT1Q92837 279 aaPredicted RBP20.71■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 TNNQ9UQP3 1299 aa20.7■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 RLBP1P12271 317 aa20.69■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 ADAMTS13Q76LX8 1427 aa20.69■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 HDGFP51858 240 aaKnown RBP20.68■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 USP19O94966 1318 aa20.67■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 STRCQ7RTU9 1775 aa20.67■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 A0A1W2PP64 1363 aa20.67■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 ABCC11Q96J66 1382 aa20.67■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 PLEKHG1Q9ULL1 1385 aa20.66■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 SETD1AO15047 1707 aaKnown RBP20.66■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 U2AF1L5P0DN76 240 aaPredicted RBP20.66■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 U2AF1Q01081 240 aaKnown RBP eCLIP20.66■□□□□ 0.91e-10■■□□□ 14.2
MSH5-SAPCD1-208ENST00000498473 PCDHB15Q9Y5E8 787 aa20.66■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 MAPK8IP3Q9UPT6 1336 aa20.66■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 AAMPQ13685 434 aa20.65■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 WAPLQ7Z5K2 1190 aa20.65■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 BCL2L13Q9BXK5 485 aa20.65■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 COL3A1P02461 1466 aaPredicted RBP20.65■□□□□ 0.9
MSH5-SAPCD1-208ENST00000498473 NFKBIBQ15653 356 aa20.64■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 NPHP4O75161 1426 aaPredicted RBP20.64■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 ANKRD26Q9UPS8 1709 aa20.63■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 PMFBP1Q8TBY8 1022 aa20.63■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 MYH16Q9H6N6 1097 aa20.63■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 DAXXQ9UER7 740 aaPredicted RBP20.63■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 PLEKHF1Q96S99 279 aa20.62■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 PTPRUQ92729 1446 aa20.62■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 SEC24BO95487 1268 aa20.62■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 CD163L1Q9NR16 1453 aa20.62■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 SRPK2P78362 688 aaKnown RBP20.6■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 GGNBP2Q9H3C7 697 aa20.6■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 YTHDC2Q9H6S0 1430 aaKnown RBP20.6■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 AMOTL2Q9Y2J4 779 aa20.59■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 KCNA6P17658 529 aa20.59■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 PRAM1Q96QH2 718 aa20.59■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 MED14O60244 1454 aa20.58■□□□□ 0.89
MSH5-SAPCD1-208ENST00000498473 FYB1O15117 783 aa20.58■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 TRIM35Q9UPQ4 493 aa20.58■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 ATAD2Q6PL18 1390 aa20.57■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 MINK1Q8N4C8 1332 aaPredicted RBP20.57■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 TMPOP42166 694 aaKnown RBP20.57■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 TSR2Q969E8 191 aaKnown RBP20.57■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 PDZRN3Q9UPQ7 1066 aa20.57■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 MVPQ14764 893 aaKnown RBP20.56■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 CT47B1P0C2W7 299 aaPredicted RBP20.55■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 ROBO2Q9HCK4 1378 aa20.55■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 ZNF335Q9H4Z2 1342 aaPredicted RBP20.55■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 NUTM2FA1L443 756 aa20.55■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 U2SURPO15042 1029 aaKnown RBP20.55■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 ZKSCAN2Q63HK3 967 aa20.55■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 POGKQ9P215 609 aa20.54■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 EXOSC9Q06265 439 aaKnown RBP20.54■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 TERF2IPQ9NYB0 399 aa20.54■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 TBX22Q9Y458 520 aa20.54■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 RWDD1Q9H446 243 aaPredicted RBP20.53■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 STRCP1A6NGW2 1772 aa20.52■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 DZIP1LQ8IYY4 767 aaKnown RBP20.52■□□□□ 0.88
MSH5-SAPCD1-208ENST00000498473 PNPLA6Q8IY17 1366 aa20.52■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 KIF20BQ96Q89 1820 aa20.51■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 EIF5BO60841 1220 aaKnown RBP20.51■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 GSE1Q14687 1217 aa20.5■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 IL16Q14005 1332 aa20.5■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 SSH1Q8WYL5 1049 aa20.5■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 CDK19Q9BWU1 502 aa20.49■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 FRAT2O75474 233 aaPredicted RBP20.49■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 TRIM27P14373 513 aa20.49■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 SMC4Q9NTJ3 1288 aa20.49■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 CHD2O14647 1828 aaKnown RBP20.49■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 FTSJ3Q8IY81 847 aaKnown RBP20.48■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 DIAPH1O60610 1272 aaKnown RBP20.47■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 CDC42BPGQ6DT37 1551 aa20.47■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 RIPK4P57078 832 aa20.46■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 HDGFL2Q7Z4V5 671 aaPredicted RBP20.46■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 CABP1Q9NZU7 370 aa20.46■□□□□ 0.87
MSH5-SAPCD1-208ENST00000498473 TBC1D32Q96NH3 1257 aa20.45■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 ATF7IPQ6VMQ6 1270 aa20.45■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 C14orf37Q86TY3 774 aa20.44■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 IL27Q8NEV9 243 aa20.44■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 HDAC1Q13547 482 aaPredicted RBP20.43■□□□□ 0.86
MSH5-SAPCD1-208ENST00000498473 NOB1Q9ULX3 412 aaKnown RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms