RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	UHRF1BP1	Q6BDS2	1440 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	ERICH4	A6NGS2	130 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	IPO8	O15397	1037 aa	Known RBP	13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	CFAP70	Q5T0N1	1121 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	DRC7	Q8IY82	874 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	ZNF592	Q92610	1267 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	TSPY26P	Q9H489	355 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.99	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	ST18	O60284	1047 aa		12.99	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	PRAG1	Q86YV5	1406 aa		12.99	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	LMBRD1	Q9NUN5	540 aa		12.99	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	ZNF500	O60304	480 aa	Predicted RBP	12.98	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	MAGI2	Q86UL8	1455 aa		12.98	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	NPHP1	O15259	732 aa		12.98	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	CDC45	O75419	566 aa		12.98	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	RBM25	P49756	843 aa	Known RBP	12.98	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	GPT2	Q8TD30	523 aa		12.98	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	C9orf84	Q5VXU9	1444 aa		12.98	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	COL17A1	Q9UMD9	1497 aa	Predicted RBP	12.97	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	NEK4	P51957	841 aa		12.97	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	CARD14	Q9BXL6	1004 aa		12.97	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	NINL	Q9Y2I6	1382 aa		12.97	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.97	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	NOLC1	Q14978	699 aa	Known RBP eCLIP	12.96	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	LRSAM1	Q6UWE0	723 aa		12.96	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	ZNF445	P59923	1031 aa		12.96	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	CASC1	Q6TDU7	716 aa		12.96	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	C16orf71	Q8IYS4	520 aa	Predicted RBP	12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	RABEP1	Q15276	862 aa		12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	CCDC27	Q2M243	656 aa		12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	THUMPD2	Q9BTF0	503 aa	Known RBP	12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	DNAJC5	Q9H3Z4	198 aa		12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	KCNJ4	P48050	445 aa		12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	TERF1	P54274	439 aa		12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	HMGN5	P82970	282 aa	Known RBP	12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	ZNF710	Q8N1W2	664 aa		12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	SYAP1	Q96A49	352 aa	Predicted RBP	12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	RTEL1-TNFRSF6B	F6WH68	1400 aa		12.95	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	PDIA4	P13667	645 aa	Known RBP	12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	HCLS1	P14317	486 aa	Predicted RBP	12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	NUCB1	Q02818	461 aa		12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	SMARCA5	O60264	1052 aa	Predicted RBP	12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	CERS3	Q8IU89	383 aa		12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	WDR63	Q8IWG1	891 aa		12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	MYRIP	Q8NFW9	859 aa		12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	LARP6	Q9BRS8	491 aa	Known RBP	12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	BCL2L12	Q9HB09	334 aa		12.94	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	ADCY5	O95622	1261 aa		12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	HDAC1	Q13547	482 aa	Predicted RBP	12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	BMP2KL	Q5H9B9	411 aa		12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	GPRASP1	Q5JY77	1395 aa		12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	ARHGEF11	O15085	1522 aa		12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	IQGAP2	Q13576	1575 aa		12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	HS1BP3	Q53T59	392 aa		12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	AEBP1	Q8IUX7	1158 aa		12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	KIF2C	Q99661	725 aa		12.93	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	INSR	P06213	1382 aa		12.92	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	SAMD9	Q5K651	1589 aa		12.92	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	DDIT3	P35638	169 aa		12.92	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	FIBP	O43427	364 aa		12.92	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	UPF3B	Q9BZI7	483 aa	Known RBP	12.92	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	GGNBP2	Q9H3C7	697 aa		12.92	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	IFT57	Q9NWB7	429 aa		12.92	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	NGEF	Q8N5V2	710 aa		12.91	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	12.91	□□□□□ -0.34
TRAPPC12-223	ENST00000497597		V9GYY5	206 aa	Predicted RBP	12.91	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	TMEM132E	Q6IEE7	984 aa		12.91	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	OTUD7A	Q8TE49	926 aa	Predicted RBP	12.91	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	ZBTB9	Q96C00	473 aa		12.91	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	MBD3	O95983	291 aa		12.9	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	TSHZ3	Q63HK5	1081 aa		12.9	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	TRIM6-TRIM34	B2RNG4	842 aa		12.9	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	C16orf45	Q96MC5	204 aa	Predicted RBP	12.9	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	ZBTB40	Q9NUA8	1239 aa		12.9	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	ATAD2	Q6PL18	1390 aa		12.9	□□□□□ -0.34
TRAPPC12-223	ENST00000497597	RIOK3	O14730	519 aa	Known RBP	12.9	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	GADD45B	O75293	160 aa	Predicted RBP	12.9	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	MCM5	P33992	734 aa		12.9	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	RILPL2	Q969X0	211 aa		12.9	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	GTPBP4	Q9BZE4	634 aa	Known RBP	12.89	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	ANO2	Q9NQ90	1003 aa		12.89	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	TMEM51	Q9NW97	253 aa		12.89	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	PDLIM2	Q96JY6	352 aa		12.89	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	LETM1	O95202	739 aa	Predicted RBP	12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	INTS3	Q68E01	1043 aa	Known RBP	12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	OSCAR	Q8IYS5	282 aa		12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	DIAPH3	Q9NSV4	1193 aa		12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	STK26	Q9P289	416 aa		12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	DNMT1	P26358	1616 aa	Known RBP	12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	TRO	Q12816	1431 aa	Predicted RBP	12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	VIRMA	Q69YN4	1812 aa	Known RBP	12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	PHF14	O94880	888 aa		12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	HMOX1	P09601	288 aa		12.88	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	GPATCH8	Q9UKJ3	1502 aa	Known RBP	12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	A2M	P01023	1474 aa		12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	ASXL1	Q8IXJ9	1541 aa		12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	TMPO	P42166	694 aa	Known RBP	12.87	□□□□□ -0.35
TRAPPC12-223	ENST00000497597	NAA30	Q147X3	362 aa	Predicted RBP	12.87	□□□□□ -0.35

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