RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 TOPAZ1Q8N9V7 1692 aa16.97■□□□□ 0.31
GARNL3-220ENST00000496711 BCAR3O75815 825 aa16.97■□□□□ 0.31
GARNL3-220ENST00000496711 ADAMTS13Q76LX8 1427 aa16.96■□□□□ 0.31
GARNL3-220ENST00000496711 KDM2BQ8NHM5 1336 aa16.96■□□□□ 0.31
GARNL3-220ENST00000496711 MS4A1P11836 297 aa16.95■□□□□ 0.3
GARNL3-220ENST00000496711 PLEKHG1Q9ULL1 1385 aa16.95■□□□□ 0.3
GARNL3-220ENST00000496711 LRRC7Q96NW7 1537 aa16.95■□□□□ 0.3
GARNL3-220ENST00000496711 U2SURPO15042 1029 aaKnown RBP16.95■□□□□ 0.3
GARNL3-220ENST00000496711 TXNDC2Q86VQ3 553 aa16.95■□□□□ 0.3
GARNL3-220ENST00000496711 CENPQQ7L2Z9 268 aaPredicted RBP16.94■□□□□ 0.3
GARNL3-220ENST00000496711 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.94■□□□□ 0.3
GARNL3-220ENST00000496711 NRKQ7Z2Y5 1582 aa16.93■□□□□ 0.3
GARNL3-220ENST00000496711 PLEKHF1Q96S99 279 aa16.93■□□□□ 0.3
GARNL3-220ENST00000496711 MAPK8IP3Q9UPT6 1336 aa16.93■□□□□ 0.3
GARNL3-220ENST00000496711 DIAPH1O60610 1272 aaKnown RBP16.93■□□□□ 0.3
GARNL3-220ENST00000496711 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.93■□□□□ 0.3
GARNL3-220ENST00000496711 MYH16Q9H6N6 1097 aa16.93■□□□□ 0.3
GARNL3-220ENST00000496711 SLIT1O75093 1534 aa16.92■□□□□ 0.3
GARNL3-220ENST00000496711 PDE3AQ14432 1141 aa16.92■□□□□ 0.3
GARNL3-220ENST00000496711 CDK12Q9NYV4 1490 aaPredicted RBP16.91■□□□□ 0.3
GARNL3-220ENST00000496711 ROBO2Q9HCK4 1378 aa16.9■□□□□ 0.3
GARNL3-220ENST00000496711 CANXP27824 592 aaKnown RBP16.9■□□□□ 0.3
GARNL3-220ENST00000496711 NUDT16Q96DE0 195 aaKnown RBP16.9■□□□□ 0.3
GARNL3-220ENST00000496711 ARHGAP23Q9P227 1491 aa16.9■□□□□ 0.3
GARNL3-220ENST00000496711 PNNQ9H307 717 aaKnown RBP16.9■□□□□ 0.3
GARNL3-220ENST00000496711 ANP32AP39687 249 aaKnown RBP16.89■□□□□ 0.29
GARNL3-220ENST00000496711 TMPOP42166 694 aaKnown RBP16.89■□□□□ 0.29
GARNL3-220ENST00000496711 RARSP54136 660 aaKnown RBP16.89■□□□□ 0.29
GARNL3-220ENST00000496711 DIP2AQ14689 1571 aa16.89■□□□□ 0.29
GARNL3-220ENST00000496711 ERICH6Q7L0X2 663 aa16.88■□□□□ 0.29
GARNL3-220ENST00000496711 CCDC61Q9Y6R9 512 aa16.88■□□□□ 0.29
GARNL3-220ENST00000496711 AATKQ6ZMQ8 1374 aa16.87■□□□□ 0.29
GARNL3-220ENST00000496711 PDE4AP27815 886 aa16.87■□□□□ 0.29
GARNL3-220ENST00000496711 POLKQ9UBT6 870 aa16.87■□□□□ 0.29
GARNL3-220ENST00000496711 NALCNQ8IZF0 1738 aa16.86■□□□□ 0.29
GARNL3-220ENST00000496711 VIRMAQ69YN4 1812 aaKnown RBP16.86■□□□□ 0.29
GARNL3-220ENST00000496711 RIMS1Q86UR5 1692 aaKnown RBP16.86■□□□□ 0.29
GARNL3-220ENST00000496711 CT47B1P0C2W7 299 aaPredicted RBP16.86■□□□□ 0.29
GARNL3-220ENST00000496711 LTKP29376 864 aa16.86■□□□□ 0.29
GARNL3-220ENST00000496711 NME9Q86XW9 330 aa16.86■□□□□ 0.29
GARNL3-220ENST00000496711 BACH2Q9BYV9 841 aa16.86■□□□□ 0.29
GARNL3-220ENST00000496711 TRIM35Q9UPQ4 493 aa16.86■□□□□ 0.29
GARNL3-220ENST00000496711 IL16Q14005 1332 aa16.86■□□□□ 0.29
GARNL3-220ENST00000496711 PRR36Q9H6K5 1346 aa16.86■□□□□ 0.29
GARNL3-220ENST00000496711 CEBPAP49715 358 aaPredicted RBP16.85■□□□□ 0.29
GARNL3-220ENST00000496711 FCHSD2O94868 740 aa16.84■□□□□ 0.29
GARNL3-220ENST00000496711 FRAT1Q92837 279 aaPredicted RBP16.84■□□□□ 0.29
GARNL3-220ENST00000496711 PTPRUQ92729 1446 aa16.84■□□□□ 0.29
GARNL3-220ENST00000496711 DLG5Q8TDM6 1919 aa16.84■□□□□ 0.29
GARNL3-220ENST00000496711 PANK1Q8TE04 598 aa16.84■□□□□ 0.29
GARNL3-220ENST00000496711 EID1Q9Y6B2 187 aa16.84■□□□□ 0.29
GARNL3-220ENST00000496711 NCKAP5LQ9HCH0 1330 aa16.84■□□□□ 0.29
GARNL3-220ENST00000496711 XRN1Q8IZH2 1706 aaKnown RBP16.83■□□□□ 0.29
GARNL3-220ENST00000496711 PPM1GO15355 546 aaPredicted RBP16.83■□□□□ 0.28
GARNL3-220ENST00000496711 SKAP1Q86WV1 359 aa16.83■□□□□ 0.28
GARNL3-220ENST00000496711 COG3Q96JB2 828 aa16.83■□□□□ 0.28
GARNL3-220ENST00000496711 ZNF692Q9BU19 519 aaPredicted RBP16.83■□□□□ 0.28
GARNL3-220ENST00000496711 RSPH6AQ9H0K4 717 aa16.83■□□□□ 0.28
GARNL3-220ENST00000496711 PTCH1Q13635 1447 aa16.83■□□□□ 0.28
GARNL3-220ENST00000496711 RIPK4P57078 832 aa16.82■□□□□ 0.28
GARNL3-220ENST00000496711 CLUAP1Q96AJ1 413 aa16.82■□□□□ 0.28
GARNL3-220ENST00000496711 COG6Q9Y2V7 657 aa16.82■□□□□ 0.28
GARNL3-220ENST00000496711 AAMPQ13685 434 aa16.82■□□□□ 0.28
GARNL3-220ENST00000496711 TSR2Q969E8 191 aaKnown RBP16.82■□□□□ 0.28
GARNL3-220ENST00000496711 EMILIN1Q9Y6C2 1016 aa16.82■□□□□ 0.28
GARNL3-220ENST00000496711 NEFMP07197 916 aa16.81■□□□□ 0.28
GARNL3-220ENST00000496711 FBLN1P23142 703 aa16.81■□□□□ 0.28
GARNL3-220ENST00000496711 IPO9Q96P70 1041 aaKnown RBP16.81■□□□□ 0.28
GARNL3-220ENST00000496711 PRKAR2BP31323 418 aa16.8■□□□□ 0.28
GARNL3-220ENST00000496711 BCL2L13Q9BXK5 485 aa16.8■□□□□ 0.28
GARNL3-220ENST00000496711 NOP58Q9Y2X3 529 aaKnown RBP16.8■□□□□ 0.28
GARNL3-220ENST00000496711 RGPD8O14715 1765 aaPredicted RBP16.8■□□□□ 0.28
GARNL3-220ENST00000496711 ZRANB1Q9UGI0 708 aa16.8■□□□□ 0.28
GARNL3-220ENST00000496711 FMN2Q9NZ56 1722 aa16.79■□□□□ 0.28
GARNL3-220ENST00000496711 CEP170BQ9Y4F5 1589 aaPredicted RBP16.79■□□□□ 0.28
GARNL3-220ENST00000496711 EXOSC9Q06265 439 aaKnown RBP16.79■□□□□ 0.28
GARNL3-220ENST00000496711 OVOS2A0A0J9YW53 1432 aa16.79■□□□□ 0.28
GARNL3-220ENST00000496711 USP6P35125 1406 aa16.79■□□□□ 0.28
GARNL3-220ENST00000496711 OVOS2Q6IE36 1432 aa16.79■□□□□ 0.28
GARNL3-220ENST00000496711 IL13P35225 146 aa16.78■□□□□ 0.28
GARNL3-220ENST00000496711 SLC26A8Q96RN1 970 aa16.78■□□□□ 0.28
GARNL3-220ENST00000496711 RLBP1P12271 317 aa16.77■□□□□ 0.27
GARNL3-220ENST00000496711 TBX22Q9Y458 520 aa16.77■□□□□ 0.27
GARNL3-220ENST00000496711 ACEP12821 1306 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 PLEKHG3A1L390 1219 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 ZKSCAN2Q63HK3 967 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 PEAK1Q9H792 1746 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 TNNQ9UQP3 1299 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 TTC21BQ7Z4L5 1316 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 HMOX1P09601 288 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 NFE2L2Q16236 605 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 THEMISQ8N1K5 641 aaPredicted RBP16.76■□□□□ 0.27
GARNL3-220ENST00000496711 SMC4Q9NTJ3 1288 aa16.76■□□□□ 0.27
GARNL3-220ENST00000496711 ZNF142P52746 1687 aaPredicted RBP16.75■□□□□ 0.27
GARNL3-220ENST00000496711 IGHDP01880 384 aa16.75■□□□□ 0.27
GARNL3-220ENST00000496711 NPM2Q86SE8 214 aaKnown RBP16.75■□□□□ 0.27
GARNL3-220ENST00000496711 AMOTL2Q9Y2J4 779 aa16.75■□□□□ 0.27
GARNL3-220ENST00000496711 RGPD1P0DJD0 1748 aa16.75■□□□□ 0.27
GARNL3-220ENST00000496711 RRS1Q15050 365 aaKnown RBP16.74■□□□□ 0.27
GARNL3-220ENST00000496711 PLPPR3Q6T4P5 718 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms