RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 RSBN1LQ6PCB5 846 aaPredicted RBP11□□□□□ -0.65
VPS50-219ENST00000495039 MPNDQ8N594 471 aa11□□□□□ -0.65
VPS50-219ENST00000495039 NXF1Q9UBU9 619 aaKnown RBP11□□□□□ -0.65
VPS50-219ENST00000495039 CTHP32929 405 aa10.98□□□□□ -0.65
VPS50-219ENST00000495039 NNTQ13423 1086 aa10.97□□□□□ -0.65
VPS50-219ENST00000495039 LYPD8Q6UX82 237 aa10.97□□□□□ -0.65
VPS50-219ENST00000495039 NPAS3Q8IXF0 933 aa10.97□□□□□ -0.65
VPS50-219ENST00000495039 PARP9Q8IXQ6 854 aa10.97□□□□□ -0.65
VPS50-219ENST00000495039 ZBTB3Q9H5J0 574 aa10.96□□□□□ -0.65
VPS50-219ENST00000495039 SPTLC1O15269 473 aa10.95□□□□□ -0.66
VPS50-219ENST00000495039 FAM174AQ8TBP5 190 aa10.95□□□□□ -0.66
VPS50-219ENST00000495039 CFAP99D6REC4 459 aa10.94□□□□□ -0.66
VPS50-219ENST00000495039 ZFP42Q96MM3 310 aa10.94□□□□□ -0.66
VPS50-219ENST00000495039 PCDHB15Q9Y5E8 787 aa10.94□□□□□ -0.66
VPS50-219ENST00000495039 TRIM66O15016 1216 aa10.93□□□□□ -0.66
VPS50-219ENST00000495039 ADH1CP00326 375 aa10.93□□□□□ -0.66
VPS50-219ENST00000495039 HRCP23327 699 aa10.93□□□□□ -0.66
VPS50-219ENST00000495039 PRPF38BQ5VTL8 546 aaKnown RBP10.93□□□□□ -0.66
VPS50-219ENST00000495039 IRF7Q92985 503 aa10.93□□□□□ -0.66
VPS50-219ENST00000495039 F12P00748 615 aaPredicted RBP10.91□□□□□ -0.66
VPS50-219ENST00000495039 TIMP2P16035 220 aa10.91□□□□□ -0.66
VPS50-219ENST00000495039 WDR4P57081 412 aaKnown RBP10.91□□□□□ -0.66
VPS50-219ENST00000495039 SCARF1Q14162 830 aa10.91□□□□□ -0.66
VPS50-219ENST00000495039 MRPL14Q6P1L8 145 aaKnown RBP10.91□□□□□ -0.66
VPS50-219ENST00000495039 RIC3Q7Z5B4 369 aa10.91□□□□□ -0.66
VPS50-219ENST00000495039 AK7Q96M32 723 aa10.91□□□□□ -0.66
VPS50-219ENST00000495039 MAP10Q9P2G4 905 aa10.91□□□□□ -0.66
VPS50-219ENST00000495039 H3BM21 787 aa10.89□□□□□ -0.67
VPS50-219ENST00000495039 GMPRP36959 345 aa10.89□□□□□ -0.67
VPS50-219ENST00000495039 CDK15Q96Q40 435 aa10.89□□□□□ -0.67
VPS50-219ENST00000495039 FAM181BA6NEQ2 426 aa10.88□□□□□ -0.67
VPS50-219ENST00000495039 CABLES1Q8TDN4 633 aa10.88□□□□□ -0.67
VPS50-219ENST00000495039 FOXJ1Q92949 421 aa10.88□□□□□ -0.67
VPS50-219ENST00000495039 VEGFBP49765 207 aa10.87□□□□□ -0.67
VPS50-219ENST00000495039 ARID5BQ14865 1188 aa10.87□□□□□ -0.67
VPS50-219ENST00000495039 AGERQ15109 404 aa10.87□□□□□ -0.67
VPS50-219ENST00000495039 CSPP1Q1MSJ5 1256 aa10.87□□□□□ -0.67
VPS50-219ENST00000495039 PURBQ96QR8 312 aaKnown RBP10.87□□□□□ -0.67
VPS50-219ENST00000495039 BPHLQ86WA6 291 aaPredicted RBP10.86□□□□□ -0.67
VPS50-219ENST00000495039 KLF16Q9BXK1 252 aaPredicted RBP10.86□□□□□ -0.67
VPS50-219ENST00000495039 NR5A1Q13285 461 aa10.85□□□□□ -0.67
VPS50-219ENST00000495039 TSC1Q92574 1164 aa10.84□□□□□ -0.67
VPS50-219ENST00000495039 NUTM2BA6NNL0 878 aaPredicted RBP10.83□□□□□ -0.68
VPS50-219ENST00000495039 NUTM2EB1AL46 878 aaPredicted RBP10.83□□□□□ -0.68
VPS50-219ENST00000495039 PER1O15534 1290 aaPredicted RBP10.83□□□□□ -0.68
VPS50-219ENST00000495039 ZIC2O95409 532 aaPredicted RBP10.83□□□□□ -0.68
VPS50-219ENST00000495039 TUSC1Q2TAM9 212 aa10.83□□□□□ -0.68
VPS50-219ENST00000495039 NUTM2DQ5VT03 806 aaPredicted RBP10.83□□□□□ -0.68
VPS50-219ENST00000495039 NUTM2AQ8IVF1 878 aaPredicted RBP10.83□□□□□ -0.68
VPS50-219ENST00000495039 ZSCAN1Q8NBB4 408 aa10.83□□□□□ -0.68
VPS50-219ENST00000495039 ARMC2Q8NEN0 867 aa10.83□□□□□ -0.68
VPS50-219ENST00000495039 C4orf48Q5BLP8 95 aa10.82□□□□□ -0.68
VPS50-219ENST00000495039 MYSM1Q5VVJ2 828 aa10.82□□□□□ -0.68
VPS50-219ENST00000495039 LIMD1Q9UGP4 676 aa10.82□□□□□ -0.68
VPS50-219ENST00000495039 ERBB4Q15303 1308 aa10.82□□□□□ -0.68
VPS50-219ENST00000495039 QPCTQ16769 361 aa10.81□□□□□ -0.68
VPS50-219ENST00000495039 ITPKCQ96DU7 683 aa10.81□□□□□ -0.68
VPS50-219ENST00000495039 ZFAND3Q9H8U3 227 aa10.81□□□□□ -0.68
VPS50-219ENST00000495039 NR3C2P08235 984 aa10.8□□□□□ -0.68
VPS50-219ENST00000495039 PDE4DQ08499 809 aa10.8□□□□□ -0.68
VPS50-219ENST00000495039 NBPF14Q5TI25 921 aa10.8□□□□□ -0.68
VPS50-219ENST00000495039 HELBQ8NG08 1087 aaPredicted RBP10.8□□□□□ -0.68
VPS50-219ENST00000495039 LILRB3O75022 631 aa10.79□□□□□ -0.68
VPS50-219ENST00000495039 GRM5P41594 1212 aa10.79□□□□□ -0.68
VPS50-219ENST00000495039 SOBPA7XYQ1 873 aa10.78□□□□□ -0.68
VPS50-219ENST00000495039 UPP2O95045 317 aa10.78□□□□□ -0.68
VPS50-219ENST00000495039 MAN1A2O60476 641 aa10.77□□□□□ -0.69
VPS50-219ENST00000495039 LORP23490 312 aaPredicted RBP10.77□□□□□ -0.69
VPS50-219ENST00000495039 C6orf118Q5T5N4 469 aa10.77□□□□□ -0.69
VPS50-219ENST00000495039 C1QTNF2Q9BXJ5 285 aa10.77□□□□□ -0.69
VPS50-219ENST00000495039 VSIG8P0DPA2 414 aa10.76□□□□□ -0.69
VPS50-219ENST00000495039 SH3RF1Q7Z6J0 888 aa10.76□□□□□ -0.69
VPS50-219ENST00000495039 BMP2P12643 396 aa10.75□□□□□ -0.69
VPS50-219ENST00000495039 FSHRP23945 695 aa10.75□□□□□ -0.69
VPS50-219ENST00000495039 LINC00528Q8N1L1 170 aa10.75□□□□□ -0.69
VPS50-219ENST00000495039 MEIOBQ8N635 442 aa10.75□□□□□ -0.69
VPS50-219ENST00000495039 MAP4K5Q9Y4K4 846 aa10.75□□□□□ -0.69
VPS50-219ENST00000495039 CLK2P49760 499 aaKnown RBP10.74□□□□□ -0.69
VPS50-219ENST00000495039 TRMT44Q8IYL2 757 aaKnown RBP10.74□□□□□ -0.69
VPS50-219ENST00000495039 VASH1Q7L8A9 365 aaPredicted RBP10.73□□□□□ -0.69
VPS50-219ENST00000495039 SH3BP5LQ7L8J4 393 aa10.73□□□□□ -0.69
VPS50-219ENST00000495039 GPKOWQ92917 476 aaPredicted RBP eCLIP10.73□□□□□ -0.69
VPS50-219ENST00000495039 MAGEB6P1A0A0J9YX57 407 aa10.72□□□□□ -0.69
VPS50-219ENST00000495039 RTL5Q5HYW3 569 aaPredicted RBP10.72□□□□□ -0.69
VPS50-219ENST00000495039 RSPH6AQ9H0K4 717 aa10.72□□□□□ -0.69
VPS50-219ENST00000495039 SLC24A3Q9HC58 644 aa10.71□□□□□ -0.69
VPS50-219ENST00000495039 EMILIN1Q9Y6C2 1016 aa10.71□□□□□ -0.69
VPS50-219ENST00000495039 CCDC116Q8IYX3 515 aa10.7□□□□□ -0.7
VPS50-219ENST00000495039 TSEN34Q9BSV6 310 aaKnown RBP10.69□□□□□ -0.7
VPS50-219ENST00000495039 CARD14Q9BXL6 1004 aa10.69□□□□□ -0.7
VPS50-219ENST00000495039 SOS2Q07890 1332 aaPredicted RBP10.68□□□□□ -0.7
VPS50-219ENST00000495039 PPFIA3O75145 1194 aa10.67□□□□□ -0.7
VPS50-219ENST00000495039 POLR3EQ9NVU0 708 aa10.67□□□□□ -0.7
VPS50-219ENST00000495039 DNMT3LQ9UJW3 386 aa10.67□□□□□ -0.7
VPS50-219ENST00000495039 ERFEQ4G0M1 354 aa10.66□□□□□ -0.7
VPS50-219ENST00000495039 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.64□□□□□ -0.71
VPS50-219ENST00000495039 PGPEP1Q9NXJ5 209 aa10.64□□□□□ -0.71
VPS50-219ENST00000495039 TTLL8A6PVC2 850 aa10.63□□□□□ -0.71
VPS50-219ENST00000495039 CTDSPL2Q05D32 466 aa10.63□□□□□ -0.71
VPS50-219ENST00000495039 PDXDC2PQ6P474 469 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms